mRNA_E-fasciculatus_F_contig12171.1688.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12171.1688.1
Unique NamemRNA_E-fasciculatus_F_contig12171.1688.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12171.1688.1 vs. uniprot
Match: A0A836CLG1_9STRA (Complex1_LYR_dom domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLG1_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.170e-18
Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 1
Query:   10 ELLRQAESRLGFLRMATPRSKVGSKGSTRAVYRDGKVMEGEEARKHDKARHSNWDGRNMDPDSVRYHKQNLARAGFANHRQVIGPHGF 273
            +LL QA+SRL +L++ TPR     +G+ + VY+DGK++E  +  +  +A  SNW G NMDPDSV  H+  L+RAGF +H  V+G HGF
Sbjct:   46 QLLNQAQSRLSYLKIVTPRDARNQEGAVKVVYQDGKLVEHVQTDRP-RAPISNWTGSNMDPDSVSRHRHTLSRAGFKDHGHVLGEHGF 132          
BLAST of mRNA_E-fasciculatus_F_contig12171.1688.1 vs. uniprot
Match: A0A7S2S2D5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2D5_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.190e-17
Identity = 45/86 (52.33%), Postives = 58/86 (67.44%), Query Frame = 1
Query:   10 ELLRQAESRLGFLRMATPRS--KVGSKGSTRAVYRDGKVMEGEEARKHDKARHSNWDGRNMDPDSVRYHKQNLARAGFANHRQVIG 261
            +LL QAESRL FL+M TPR   ++G + ST  VY++GK ++   AR  D+ARHSNW G NMDPDSV  H+  L RAGF ++    G
Sbjct:   54 QLLAQAESRLSFLKMVTPREYHRLGGQQSTYYVYQNGKRLDDGSARTQDRARHSNWTGSNMDPDSVAKHQHLLNRAGFQDNSHAKG 139          
BLAST of mRNA_E-fasciculatus_F_contig12171.1688.1 vs. uniprot
Match: A0A1Z5K517_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K517_FISSO)

HSP 1 Score: 64.7 bits (156), Expect = 3.080e-11
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 1
Query:   16 LRQAESRLGFLRMATPRSKVGSKGSTRAVYRDGKVMEG--EEARKHDKARH-SNWDGRNMDPDSVRYHKQNLARAGFANHRQVIG 261
            LR+AESRL FLRM + +S+     + R VYR+G+ +E   E   +  K +  SNWDG+N+DP+SV+ H+Q L RAGF N+    G
Sbjct:   50 LREAESRLSFLRMKSTKSQQRGTLAGRWVYRNGERLEADAEGTFRDSKGKVVSNWDGKNLDPESVKMHRQQLRRAGFVNNAHAKG 134          
BLAST of mRNA_E-fasciculatus_F_contig12171.1688.1 vs. uniprot
Match: A0A7S2HLR1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HLR1_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.760e-9
Identity = 38/95 (40.00%), Postives = 51/95 (53.68%), Query Frame = 1
Query:    1 QAHELLRQAESRLGFLRMATPRSK-----VGSKGSTRAVY--RDGKVMEGEEARKHDKAR-HSNWDGRNMDPDSVRYHKQNLARAGFANHRQVIG 261
            Q   LL +A  ++ +LR+ TP+ K           TR VY  +  K+ +G     H K + HSNW G NMDP SV+ HKQ L+RAGF N+    G
Sbjct:   53 QIQPLLEEAGKKIAYLRIITPKDKWRGDSKSQSAETRWVYNGKGEKIQDGVGTPSHQKGKVHSNWSGGNMDPCSVKRHKQQLSRAGFVNNLHAKG 147          
BLAST of mRNA_E-fasciculatus_F_contig12171.1688.1 vs. uniprot
Match: A0A4D9CSL6_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSL6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.780e-9
Identity = 38/97 (39.18%), Postives = 51/97 (52.58%), Query Frame = 1
Query:   10 ELLRQAESRLGFLRMATPR-------------SKVGSKGSTRAVYRDGKVMEGEEARKHDKARHSNWDGRNMDPDSVRYHKQNLARAGFANHRQVIG 261
            EL+ QA S LG+LRM TP+                 S G T  VY+DG  +   E    +K+ +SNWDG +MDPD+VR H+  L R GF ++    G
Sbjct:   57 ELMEQASSSLGYLRMITPKRWKSLHTGDSDAMGGAQSAGRTYIVYKDGGSVS-REPLPREKSAYSNWDGSSMDPDAVRRHQHQLRRMGFRDNTHAKG 152          
BLAST of mRNA_E-fasciculatus_F_contig12171.1688.1 vs. uniprot
Match: A0A448YU73_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YU73_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 7.450e-9
Identity = 39/93 (41.94%), Postives = 51/93 (54.84%), Query Frame = 1
Query:   16 LRQAESRLGFLRMATPRSKVGSKGSTRA--------VYRDGKVMEGEEA-RKHDKARH--SNWDGRNMDPDSVRYHKQNLARAGFANHRQVIG 261
            L +AES+  FL+M TPR +  S   T          VYR+G+ +E + A R  DK     SNWDG+N+DPDSV+ H   L R GF N+    G
Sbjct:   59 LEEAESKRSFLKMVTPRERPSSSRRTEEGASPSRVWVYRNGERLERDGASRVRDKNGRVVSNWDGKNLDPDSVKQHNYQLKRMGFRNNAHAKG 151          
BLAST of mRNA_E-fasciculatus_F_contig12171.1688.1 vs. uniprot
Match: A0A6U3XLZ3_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3XLZ3_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.420e-7
Identity = 34/87 (39.08%), Postives = 49/87 (56.32%), Query Frame = 1
Query:   13 LLRQAESRLGFLRMATPRSK-VGSKGSTRAVYRDG---KVMEGEEARKHDKARHSNWDGRNMDPDSVRYHKQNLARAGFANHRQVIG 261
            L+ +A  ++ +LR+ TP+ +    K S R +Y DG   KV  G      D    SNW+G+N+DP SV+ H+Q L RAGF N+    G
Sbjct:   71 LIEEAGKKIAYLRIVTPKDRSTNQKSSERWIY-DGNGNKVFNGIGQLNRDGKAVSNWNGKNLDPCSVKRHRQQLGRAGFVNNLHAKG 156          
BLAST of mRNA_E-fasciculatus_F_contig12171.1688.1 vs. uniprot
Match: A0A6U5IKK5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5IKK5_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 2.440e-5
Identity = 34/87 (39.08%), Postives = 49/87 (56.32%), Query Frame = 1
Query:   13 LLRQAESRLGFLRMATPRSKVGS---KGSTRAVY-RDGKVMEGEEARKHDKARHSNWDGRNMDPDSVRYHKQNLARAGFANHRQVIG 261
            LL +AE ++ +LRM TP+ +      +GS R VY R+G+   G   R    A  SNW G N+DP+SV+ H Q L R G+ ++    G
Sbjct:   66 LLLEAEKKMAYLRMITPKDRTRDGPQQGSVRYVYAREGEGGNGTVRR----APVSNWHGSNLDPESVKRHHQLLRRGGWRDNAHAKG 148          
BLAST of mRNA_E-fasciculatus_F_contig12171.1688.1 vs. uniprot
Match: A0A2R5GRX5_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GRX5_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 5.160e-5
Identity = 32/84 (38.10%), Postives = 49/84 (58.33%), Query Frame = 1
Query:    1 QAHELLRQAESRLGFLRMATPRSKVGSKGSTRAVYRDGKVMEGEEARKHDKARHSNWDGRNMDPDSVRYHKQNLARAGFANHRQ 252
            +  ELL  A+S+LG+L++ TPR+   + G  R V RDGK +EG  AR  D+A H   D  ++D D++  H   + R  F + R+
Sbjct:   54 KVQELLNLAQSKLGYLKIVTPRTSRDATGKARLVLRDGKWVEGS-ARLMDRAPH---DKTSVDADALAKHNYLMERQHFMHRRR 133          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12171.1688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A836CLG1_9STRA1.170e-1847.73Complex1_LYR_dom domain-containing protein (Fragme... [more]
A0A7S2S2D5_9STRA1.190e-1752.33Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1Z5K517_FISSO3.080e-1145.88Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S2HLR1_9STRA1.760e-940.00Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A4D9CSL6_9STRA2.780e-939.18Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A448YU73_9STRA7.450e-941.94Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A6U3XLZ3_9STRA3.420e-739.08Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A6U5IKK5_9STRA2.440e-539.08Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A2R5GRX5_9STRA5.160e-538.10Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12171contigE-fasciculatus_F_contig12171:3457..3732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927726.7341397-CDS-E-fasciculatus_F_contig12171:3456..37321622927726.7341397-CDS-E-fasciculatus_F_contig12171:3456..3732Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12171 3457..3732 -
1695995667.8861814-CDS-E-fasciculatus_F_contig12171:3456..37321695995667.8861814-CDS-E-fasciculatus_F_contig12171:3456..3732Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12171 3457..3732 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12171.1688.1prot_E-fasciculatus_F_contig12171.1688.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12171 3457..3732 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12171.1688.1

>prot_E-fasciculatus_F_contig12171.1688.1 ID=prot_E-fasciculatus_F_contig12171.1688.1|Name=mRNA_E-fasciculatus_F_contig12171.1688.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=92bp
QAHELLRQAESRLGFLRMATPRSKVGSKGSTRAVYRDGKVMEGEEARKHD
KARHSNWDGRNMDPDSVRYHKQNLARAGFANHRQVIGPHGF*
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mRNA from alignment at E-fasciculatus_F_contig12171:3457..3732-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12171.1688.1 ID=mRNA_E-fasciculatus_F_contig12171.1688.1|Name=mRNA_E-fasciculatus_F_contig12171.1688.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=276bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12171:3457..3732- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGCGCACGAGCTGTTGCGTCAGGCCGAGTCAAGACTGGGATTCCTCAG GATGGCAACGCCCAGAAGCAAGGTCGGCAGCAAGGGGTCCACGCGTGCAG TGTACCGGGACGGAAAGGTCATGGAGGGGGAGGAGGCTAGAAAGCACGAC AAGGCGAGGCACAGCAACTGGGACGGGCGGAACATGGACCCCGACAGCGT GCGGTATCACAAGCAAAACTTGGCCAGGGCGGGCTTCGCGAATCATCGAC AAGTGATCGGGCCACACGGTTTCTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12171:3457..3732-

>mRNA_E-fasciculatus_F_contig12171.1688.1 ID=mRNA_E-fasciculatus_F_contig12171.1688.1|Name=mRNA_E-fasciculatus_F_contig12171.1688.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=552bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12171:3457..3732- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGCGCACGAGCTGTTGCGTCAGGCCGAGTCAAGACTGGGATTCCTCAG
GATGGCAACGCCCAGAAGCAAGGTCGGCAGCAAGGGGTCCACGCGTGCAG
TGTACCGGGACGGAAAGGTCATGGAGGGGGAGGAGGCTAGAAAGCACGAC
AAGGCGAGGCACAGCAACTGGGACGGGCGGAACATGGACCCCGACAGCGT
GCGGTATCACAAGCAAAACTTGGCCAGGGCGGGCTTCGCGAATCATCGAC
AAGTGATCGGGCCACACGGTTTCTGACAGGCGCACGAGCTGTTGCGTCAG
GCCGAGTCAAGACTGGGATTCCTCAGGATGGCAACGCCCAGAAGCAAGGT
CGGCAGCAAGGGGTCCACGCGTGCAGTGTACCGGGACGGAAAGGTCATGG
AGGGGGAGGAGGCTAGAAAGCACGACAAGGCGAGGCACAGCAACTGGGAC
GGGCGGAACATGGACCCCGACAGCGTGCGGTATCACAAGCAAAACTTGGC
CAGGGCGGGCTTCGCGAATCATCGACAAGTGATCGGGCCACACGGTTTCT
GA
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