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Homology
BLAST of mRNA_E-fasciculatus_F_contig12171.1687.1 vs. uniprot
Match: D8LQC6_ECTSI (SAP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQC6_ECTSI) HSP 1 Score: 182 bits (463), Expect = 2.520e-48 Identity = 173/203 (85.22%), Postives = 174/203 (85.71%), Query Frame = 1
Query: 1 GNGTAAEPPVEPAVEATPATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEANRLAKRVERFGRIAPVTESEVAEKMAMRREKFGLPEPAAGGKQGTKRSLNPEEEAKRKKRMERFGIVDEKEEAVKRAEAEAXXXXXXXXXXXXVNPDAEKKAKVAEXXXTEASKVAWLASELAEKKAKRIARFGEDTT 609
GNGTAAEPP EPAVEAT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEA RLAKRVERFGRIAPVTESEVAEKMAMRREKFGLPEPAAGGKQGTKRSLNPEEEAKRKKRMERFGIVD+KEEA KR EAEAXXXXXXXXXXXX XX AWLASE AEKKAKRIARFGEDTT
Sbjct: 63 GNGTAAEPPAEPAVEATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAMRLAKRVERFGRIAPVTESEVAEKMAMRREKFGLPEPAAGGKQGTKRSLNPEEEAKRKKRMERFGIVDDKEEAAKRTEAEAXXXXXXXXXXXXXXXXXXXXXXXXXXX-------AWLASEQAEKKAKRIARFGEDTT 258
BLAST of mRNA_E-fasciculatus_F_contig12171.1687.1 vs. uniprot
Match: A0A6H5KM35_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM35_9PHAE) HSP 1 Score: 146 bits (369), Expect = 1.520e-36 Identity = 80/83 (96.39%), Postives = 80/83 (96.39%), Query Frame = 1
Query: 187 AEANRLAKRVERFGRIAPVTESEVAEKMAMRREKFGLPEPAAGGKQGTKRSLNPEEEAKRKKRMERFGIVDEKEEAVKRAEAE 435
AEA RLAKRVERFGRIAPVTE EVAEKMAMRREKFGLPEPAAGGKQGTKRSLNPEEEAKRKKRMERFGIVDEKEEA KRAEAE
Sbjct: 124 AEAMRLAKRVERFGRIAPVTEREVAEKMAMRREKFGLPEPAAGGKQGTKRSLNPEEEAKRKKRMERFGIVDEKEEAAKRAEAE 206
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | SAP domain |
| Ec32 ortholog | Ec-10_005130.1 |
| Exons | 4 |
| Model size | 2059 |
| Cds size | 588 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12171.1687.1 >prot_E-fasciculatus_F_contig12171.1687.1 ID=prot_E-fasciculatus_F_contig12171.1687.1|Name=mRNA_E-fasciculatus_F_contig12171.1687.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=196bp
MAMRREKFGLPEPAAGGKQGTKRSLNPEEEAKRKKRMERFGIVDEKEEAV
KRAEAEAAKRAARQEKFGYVNPDAEKKAKVAEKKATEASKVAWLASELAE
KKAKRIARFGEDTTAAAAAPKSTTPQQSSGKKGGGGGGGGRDRGGRGGGG
GGGGGGGGGGGGRDRRQSGGGGGRGRGGGPVSATAMLSQGLNSSR* back to topmRNA from alignment at E-fasciculatus_F_contig12171:164..3431+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig12171.1687.1 ID=mRNA_E-fasciculatus_F_contig12171.1687.1|Name=mRNA_E-fasciculatus_F_contig12171.1687.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3268bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12171:164..3431+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAAATGGAACCGCGGCAGAGCCACCGGTGGAACCCGCAGTGGAAGCCAC
GCCTGCTACAACCGCAGTGAGTGTCTCCTAATCTACCTAGCACCCTTCTT
TTCAATGCCTGCGGGGCTGCTTCTGCTTGTGTACCGCACCAGGGTAGCAA
CAGCGCGCGCATTGCTGTGCGCTTACATAACTGCTTGTTGCGTGTGTGCG
CAGGCTCCTTTCCAACCGGTGGTCAGGCTCCCAATTTGAAGCCGTTGATG
TTGTTGTTGTTGGTTGTTGCCGTTACTGCTGTCATATGAAGCCGCTCTGA
CCTCTGAGGGTGGCTCCGATCCCCCTTCCTCTTGAAAGGCATGAAATGAA
ACCTACGTGACTTCAACTTTGCAGCATAATTTTGTGACAGAAACCCACAC
CATCCATGCGATTCTTCTTTTCGCGTCCCAGCCAACGTTAACCAAATGGC
GAGACAACGGTAAACGCTTGAGAGTGGGAGGTGCAGTTGAAAATTGTCGT
GAATATTTCAACGCTCCGGCGGCACGGGCGAGAGAGCGGATACCTCTGCC
CAGGGTTACAAAAACAACGCATCCCATCCACAACAGCAGTATACCCTACT
CAAATTTTCCATTGCCTGTGCCACGAACGAGCAGGAGGAGGCGACGCCCC
CCGCCCCGGTAGAACCCGCTCCTACCACAGCCAACGGTGAGGTTGCTGCT
GCCACGGCTACCGCCGCTCCCGCTGTCGTCACCGCCACCGATGCCGCCGC
CGCTGCGGAAGCCAACCGGCTGGCGAAGCGCGTGGAGAGGTTTGGCCGCA
TCGCTCCGGTGACCGAGAGCGAGGTGGCGGAGAAGATGGCCATGCGCCGG
GAGAAGTTCGGCCTACCGGAGCCGGTGGGTGCCGTGGTGTGGCGAGATAC
GTGCCGTTTGGGTGTAGTGGGGGATGTTGAGGGGTGGAGCGCTTACCTCA
GTGGGGTGATGTAATGGAGCGAAGAATTTCAAAAGGGGAGGGGCGGAGTA
GAAGGAGGAGTTGTCGAGCACAAAAGTCGATTCAAAGTTGTTCGTTGTGG
CGGCCATCTCTTGGGGCGGAAGAACTAAACGACCTCCGCAACGATTCTCC
AATTTTTGTTGATGGGTCGATTCCCTTAACCGTCCATTCCAGTATCCAAC
CGACCCGCAACACCGGCGTGTTTTTTTTTCCTTCCAGGCGGCGGGCGGTA
AGCAAGGCACCAAGAGGTCGCTCAACCCCGAGGAGGAGGCCAAGAGGAAA
AAACGCATGGAGCGGTTCGGCATCGTCGATGAAAAGGAGGAGGCTGTCAA
GAGGGCGGAAGCAGAGGTGACTTTTTTCCCCTTCGTTGGTTGCTGCTTGC
TGTTCTTGGTGATGGCGGTGTTTGCTGTCTTTGCAGCTGGCGCATGATGT
GTACATACCCCTGCCTCCACTCGCGCGGTCTGGCCAGAATGTTTTGCCGT
TTGATGCCATTGCGCACTGTTTGTAAGTGCGCAATGCCTCGCCGCATGTG
CAAAAAATGGTTGGTGTACGATACGACCACACACACTCCAATTGTCTTCC
GTTCGCCCTGTAGCACACGTCTGTGTGGTTTCCTCAGCCTGTGGCTCCCT
CTTTCCCGTGGTCTCTCTCCCCTCCCCTCCCCTCCCCTCCGAAGGCTGCC
AAGCGGGCCGCACGCCAGGAAAAGTTCGGCTACGTGAACCCCGACGCCGA
AAAGAAGGCGAAGGTCGCCGAAAAGAAGGCGACGGAAGCCAGCAAGGTGG
CCTGGCTGGCTTCCGAGCTGGCCGAAAAAAAGGCCAAGCGCATCGCGCGC
TTCGGAGAGGACACCACTGCCGCCGCGGCAGCGCCCAAGTCCACCACCCC
TCAGCAGTCTTCGGGCAAAAAGGGCGGCGGCGGCGGCGGCGGCGGGAGGG
ACAGGGGCGGCCGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGG
GGGGGGGGGGGAAGGGACAGGAGGCAGAGTGGTGGTGGTGGCGGTCGTGG
TCGTGGGGGCGGCCCAGTCAGCGCGACAGCGATGCTGTCCCAGGGCTTGA
ACTCTTCGCGGTGATTGGTTGGTGGTCGTGTAGTGGGTGCTCATTTGCAG
GCACGTGAGGGAATGGCAGAGTATTAGTGCGAGGGTTGTATACCGTGTTT
AGAGCCAAAGTGCGACGGGCGTTGATAACTGGATTGGATTGGGTAAGTAG
AGTGCATTAGGGGGGGGACTGATGCTATGGCGCAAGCGTGTAAGGCCTCG
TGCCACTACTGTTGCGGTTGCGCTCTCTACGACTCTTCTCGTTCGCACGC
GGTGTTGGAAATGAAATGTGGAAATGTGAATCTGAGTTTTGGGAGTGGGA
TCCTCCTGGCCCCACAGCAAAAGCTGCGGCCATGCGCTTGATGGGTGCCC
GCACATAACTTTGGATCAGGCGCAAAATTGAATGTTAAAATAGTGCTTCG
AATGCGACAAGTCAAGCTCTGTTTTTGTTCGTGCGATTTTTAGGAGGTTG
TACATGCTTCGGCACACATTCGACCCTTCACGGGAACGGGGGCATCGAGG
TGACTACAGTTTTGTTTTTTGGGAACGATGGCTTCCATTAACGGTCTGGA
GGCAGAGACAGGGGATGAAGAAGCGACTGACTTGTTTGTGAACCAGGACA
ATACAATTAACAAGTGCATTTTCAAGCGCGGAAATAACGCACATGTGATG
GGGGCTTTTGATCCGGCAGCAGGCAGCGCAAGAAAATAGTTTGAGCGTAG
TCACCCTGGCGGCTGCTCAAGTACAGCCGTCCTTAAGAGAGAGTGTTTGA
CCACGTGCTCATGGGGACGATATATCGGGGTGCGAGTATTGGCGGCCCTC
TTTCGGACACGACATTACTATGCTGCTGAGCCCTTCCGACGCGTGATACG
CCGTTACTGCGCGTGGTTTTAGCACCGACTAGGCGGCCAACACATGTTGA
GCTTTGGAGAGATTAGTCTTGTACGCAGCCAGCGACCCCCTGCCAGCGAG
GGCCCTGCCAGCGAGCGAGAGCCTCTGCATGGCATCCGACGCCGAACGAT
CTATGTACATGTTGTGCAGCCACGACGATGTTGGTGGATTACCCGCGACG
CGTAAGCAACGAGTCGTTTCCGCCGGTGTTTACAAAGTACCTCGTAAACA
AGGTAGACCAAGCAAGTACACGAACGGCTCTAGGAGCGTATGTAGAGAAA
AAAAAAAACGGAATGCAGATAAAGTACGCCGTTGCCAACACACCGGCGCA
GATGGACTAAGAACCGCT back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig12171:164..3431+ >mRNA_E-fasciculatus_F_contig12171.1687.1 ID=mRNA_E-fasciculatus_F_contig12171.1687.1|Name=mRNA_E-fasciculatus_F_contig12171.1687.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1176bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12171:164..3431+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCCATGCGCCGGGAGAAGTTCGGCCTACCGGAGCCGATGGCCATGCG
CCGGGAGAAGTTCGGCCTACCGGAGCCGGCGGCGGGCGGTAAGCAAGGCA
CCAAGAGGTCGCTCAACCCCGAGGAGGAGGCCAAGAGGAAAAAACGCATG
GAGCGGTTCGGCATCGTCGATGAAAAGGAGGAGGCTGTCAAGAGGGCGGA
AGCAGAGGCGGCGGGCGGTAAGCAAGGCACCAAGAGGTCGCTCAACCCCG
AGGAGGAGGCCAAGAGGAAAAAACGCATGGAGCGGTTCGGCATCGTCGAT
GAAAAGGAGGAGGCTGTCAAGAGGGCGGAAGCAGAGGCTGCCAAGCGGGC
CGCACGCCAGGAAAAGTTCGGCTACGTGAACCCCGACGCCGAAAAGAAGG
CGAAGGTCGCCGAAAAGAAGGCGACGGAAGCCAGCAAGGTGGCCTGGCTG
GCTTCCGAGCTGGCCGAAAAAAAGGCCAAGCGCATCGCGCGCTTCGGAGA
GGACACCACTGCCGCCGCGGCAGCGCCCAAGTCCACCACCCCTCAGCAGT
CTTCGGGCAAAAAGGGCGGCGGCGGCGGCGGCGGCGGGAGGGACAGGGGC
GGCCGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGG
GGGAAGGGACAGGAGGCAGAGTGGTGGTGGTGGCGGTCGTGGTCGTGGGG
GCGGCCCAGTCAGCGCGACAGCGATGCTGTCCCAGGGCTTGAACTCTTCG
CGGTGAGCTGCCAAGCGGGCCGCACGCCAGGAAAAGTTCGGCTACGTGAA
CCCCGACGCCGAAAAGAAGGCGAAGGTCGCCGAAAAGAAGGCGACGGAAG
CCAGCAAGGTGGCCTGGCTGGCTTCCGAGCTGGCCGAAAAAAAGGCCAAG
CGCATCGCGCGCTTCGGAGAGGACACCACTGCCGCCGCGGCAGCGCCCAA
GTCCACCACCCCTCAGCAGTCTTCGGGCAAAAAGGGCGGCGGCGGCGGCG
GCGGCGGGAGGGACAGGGGCGGCCGGGGGGGGGGGGGGGGGGGGGGAGGG
GGGGGGGGGGGGGGGGGGGGGGGAAGGGACAGGAGGCAGAGTGGTGGTGG
TGGCGGTCGTGGTCGTGGGGGCGGCCCAGTCAGCGCGACAGCGATGCTGT
CCCAGGGCTTGAACTCTTCGCGGTGA back to top
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