mRNA_E-fasciculatus_F_contig1217.1686.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1217.1686.1
Unique NamemRNA_E-fasciculatus_F_contig1217.1686.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1217.1686.1 vs. uniprot
Match: D8LLP4_ECTSI (Leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP4_ECTSI)

HSP 1 Score: 478 bits (1229), Expect = 2.070e-161
Identity = 285/296 (96.28%), Postives = 291/296 (98.31%), Query Frame = 2 
Query:  281 MGNKESTHSSTFSRGQGATSDFRDALTSLPGSAPKNKTGRKVTAQKIKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSNRLAGAGALGALPACLTKLMLRDNSLGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPALAELILDENSLRALGDELVGLSKLKKLSARSNRIAAVDPFSGQQSISRGLFADSAVEALELAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD 1168
            MGNKES+HSSTFSRGQGATSDFRDALTSLPGSAPKNKTGRKVTAQK+KTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNM+SXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSN+LAGAGALGALPACL KL+LRDN LGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPAL ELILDENSLRALGDELVGLSKLKKLS RSNRIAAVDPFSGQQSISRGLFADSAVE+LELAGN LDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD
Sbjct:    1 MGNKESSHSSTFSRGQGATSDFRDALTSLPGSAPKNKTGRKVTAQKMKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMASXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSNQLAGAGALGALPACLKKLVLRDNRLGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPALEELILDENSLRALGDELVGLSKLKKLSVRSNRIAAVDPFSGQQSISRGLFADSAVESLELAGNALDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD 296
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1217.1686.1 vs. uniprot
Match: A0A836CA00_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA00_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.210e-30
Identity = 78/175 (44.57%), Postives = 108/175 (61.71%), Query Frame = 2 
Query:  647 DVSAGSNRLA-GAGALGALPACLTKLMLRDNSLGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPALAELILDENSLRALGDELVGLSKLKKLSARSNRIAAVDPFSGQQSISRGLFADSAVEALELAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD 1168
            D++A  N L  G  A+  LP  L+KL L  N L +VPAA+  GLPALQ+ +LS+N I  L   G  LPAL EL+ D+N +  +   +  L +LK LS RSN I +    S  Q +++ LF  +AV  L L GN + KT L+ M+GV  F+ RRE++K+K+L GG +L  S+CGLD
Sbjct:   66 DLNAARNELGLGGDAVPCLPTTLSKLDLSSNKLSQVPAALAAGLPALQICNLSSNAITSLAGLGG-LPALEELLADDNQIAVIEPSIRELRRLKTLSLRSNCIGS--DLSRGQPLAQELFECTAVVVLNLEGNVITKTQLLDMQGVSKFMERRERSKDKSLAGGALLNFSLCGLD 237
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1217.1686.1 vs. uniprot
Match: A0A7S2EAS0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EAS0_TRICV)

HSP 1 Score: 124 bits (311), Expect = 5.090e-28
Identity = 93/269 (34.57%), Postives = 132/269 (49.07%), Query Frame = 2 
Query:  413 QKIKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMS--SXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSNRLAGAGA-----------LGALPACLTKLMLRDNSLGEVPAAVLD-GLPALQVLDLSANGIEGLPPFGATLPALAELILDENSLRALGDELVGLSKLKKLSARSNRI---AAVDPFSGQQSISRGLFADSAVEALELAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD 1168
            QKI+TA  TG+L+L+EH L ++P+ ++ L  LRTL++S  +                            +  +S LS L  +SAG NRL                L +LP  L +L L  N    VP  + +  L  L+ LDLS N +  +P   A L +L ++ LD NS+ +L +E+  L KLK LS R+N I   + V      Q I   LF ++ V  L L GN +  T L   +G   FL RR K KNKN+ GG +  L+VCGL+
Sbjct:    1 QKIETAQKTGILSLREHKLDDVPDSVYELSNLRTLDLSKNNLTVLGRNLVNLANLKSLNCDSNKLQPGSLAPVSRLSKLQTLSAGGNRLGEPSRTEGPSQPQPEPLPSLPVSLKQLKLDTNFFSSVPPQICNPSLVKLEKLDLSFNFLATIPAGIAYLTSLVDINLDSNSIVSLPEEIGQLKKLKALSLRNNHIQVHSTVFSEKNPQPIPESLFTNTLVIDLNLHGNKMTNTQLNDFQGFHFFLERRTKVKNKNVYGGALTDLNVCGLE 269
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1217.1686.1 vs. uniprot
Match: H3GRI1_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=H3GRI1_PHYRM)

HSP 1 Score: 111 bits (278), Expect = 1.470e-23
Identity = 115/263 (43.73%), Postives = 139/263 (52.85%), Query Frame = 2 
Query:  383 KNKTGRKVTAQKIKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSNRLAGAGALGALPACLTKLMLRDNSLGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPALAELILDENSLRALGDELVGLSKLKKLSARSNRIAAVDPFSGQQSISRGLFAD-SAVEALELAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD 1168
            K K  R V  QK+++A ATGVLAL    LK++PE L  L  LRTL++  XXXXXXXXXXXXXXXXXXXXXXXX    +PDLSAL +LT +    N L    +  ALP  LTKL L+ N L  VP +VL+ L  LQ                                           KLK LSAR N +      +  Q I+  L  + SAV+ + L GNPL K DL  M+G D FL RR K KNK + GG    LS+CGL+
Sbjct:   18 KPKNNRSVQQQKLRSAKATGVLALPNSKLKKLPEELLELSTLRTLDLXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTLPDLSALEALTTLVLDGNLLEDIPS--ALPPNLTKLSLKGNRLRAVPRSVLE-LAQLQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLKVLSARRNTLVGRSAGAKVQPIAAELLGEGSAVQVMNLEGNPLTKEDLQGMDGFDAFLTRRTKLKNKEIHGGLNSDLSLCGLE 277
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1217.1686.1 vs. uniprot
Match: A0A225UJM0_9STRA (Putative LRR protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UJM0_9STRA)

HSP 1 Score: 110 bits (275), Expect = 4.620e-23
Identity = 116/273 (42.49%), Postives = 143/273 (52.38%), Query Frame = 2 
Query:  383 KNKTGRKVTAQKIKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSNRLAGAGALGALPACLTKLMLRDNSLGEVPAAVLDGLPALQVLDL------------SANGIEGLPPFGATLPALAELILDENSLRALGDELVGLSKLKKLSARSNRIAAVDPFSGQQSISRGLFADSAVEALELAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGL 1165
            K K  R V  QK+K+A ATGVLAL    LK++P+ L+ L  LR+L++S XXXXXXXXXXXXXXXXXXXXXXXXX   +PDLS L +LT +    N L       ALP  L KL L+ N L  VP ++L  L  LQ LDL            S N ++ LP     +                             SAR N +      +  Q I+  L  DSAV+ + L GNP+ K DL  M+G D FL RR K KNK + GG    LS+CGL
Sbjct:   18 KPKNSRSVQQQKLKSAKATGVLALPNSKLKKLPDELWQLSTLRSLDLSXXXXXXXXXXXXXXXXXXXXXXXXXXLAALPDLSPLQALTTLVLDGNVLEDLPL--ALPPNLIKLSLKGNKLRAVPRSILS-LVHLQELDLIXXXXXXXXXXXSDNALDLLPANLGEMQEXXXXXXXXXXXXXXXXXXXXXXXXXXXSARRNSLVGKSAGAKTQPIAAQLLQDSAVQVMNLDGNPMTKEDLQAMDGFDAFLTRRTKLKNKEIHGGLNSDLSLCGL 287
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1217.1686.1 vs. uniprot
Match: A0A5D6XNJ4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XNJ4_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.060e-22
Identity = 93/285 (32.63%), Postives = 123/285 (43.16%), Query Frame = 2 
Query:  323 GQGATS--DFRDALTSLPGSAPKNKTGRKVTAQKIKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMSSXXXXXXXXXXXXXXXXXXXXXXXXXXXX-IPDLSALSSLTDVSAGSNRLAGAGALGALPACLTKLMLRDNSLGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPALAELILDENSLRALGDELVGLSKLKKLSARSNRIAAVDPFSGQQSISRGLFADSAVEALELAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD 1168
            GQ AT   + R A  S P      K  R V  QK+K+A ATGVLAL +H LK++P  L  L  LR+L++SS                             +PDLSAL+                   ALP  LTKL L++N L E+P +V   L  LQ LD+S N +  LP     L +L +                             R+       G   I+R +  DS V  + L GNP+ K DL  M+G + FL RR + KNK + GG    +S+CGLD
Sbjct:    2 GQAATKAQEARAAAKSRP------KQTRSVLQQKLKSAAATGVLALPDHKLKQLPRELLELANLRSLDVSSNRLAELPRDFAAALPQLRTLKLAGNALTALPDLSALTXXXXXXXXXXXXXXX--XEALPPNLTKLSLKNNRLRELPLSVTR-LAQLQELDVSGNELAALPEHVGALASLVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRL-------GPHGIAREVLTDSGVHIMNLEGNPMSKFDLEAMDGFERFLERRTQAKNKEIHGGLSADVSLCGLD 270
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1217.1686.1 vs. uniprot
Match: A0A7S2PXK3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PXK3_9STRA)

HSP 1 Score: 106 bits (265), Expect = 7.990e-22
Identity = 83/257 (32.30%), Postives = 115/257 (44.75%), Query Frame = 2 
Query:  383 KNKTGRKVTAQKIKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMS-SXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSNRLAGAG--ALGALPACLTKLMLRDNSLGEVPAAVLDG-LPALQVLDLSANGIEGLPPFGATLPALAELILDENSLRALGDELVGLSKLKKLSARSNRIAAVDPF---SGQQSISRGLFADSAVEALELAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQG 1132
            KNKTG+KV +QKI+ A  T +L+L EH L+EIPE +F L  LRTL++S +                            I  +S L+ L  +S G NRL      +   LP+ +  L +  NS   +P  ++D  L  L+ LDL++N +  +P   + L AL ELILD                        N I         +  Q I   +F D+ +  L L GNP+  T L   EG D FL RR+K K   L G
Sbjct:   23 KNKTGKKVVSQKIENAKKTNILSLTEHKLEEIPEEVFHLTSLRTLDISKNKLQRLGNIGRLTELKTLNCDDNSLHSSAIAPISKLAKLQSLSLGKNRLEDPANQSFPTLPSKIKTLKIHHNSFSSIPKQIVDPKLRLLEKLDLASNNLASIPAGISNLVALTELILDXXXXXXXXXXXXXXXXXXXXXXXXNYIQVKSTSFTDANPQPIPASVFEDTLLIDLNLHGNPMTNTQLNTFEGFDAFLERRKKKKTTALTG 279
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1217.1686.1 vs. uniprot
Match: A0A3M6V6T7_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V6T7_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.410e-21
Identity = 108/262 (41.22%), Postives = 131/262 (50.00%), Query Frame = 2 
Query:  383 KNKTGRKVTAQKIKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSNRLAGAGALGALPACLTKLMLRDNSLGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPALAELILDENSLRALGDELVGLSKLKKLSARSNRIAAVDPFSGQQSISRGLFA-DSAVEALELAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGL 1165
            K K  R +  QK+KTA  TGVLAL    LK++PE +  L  LR L+++   XXXXXXXXXXXXXXXXXXXXXX    +PDLSAL+ LT                 LP  L KL L++N L  VP +VL  L  LQ                                           KLK LSAR N +      +  QSI+  L   DSAV+ + L GNP+ K DL +M+G D FL RR K KNK + GG    LS+CGL
Sbjct:   18 KPKNNRSIQQQKMKTAKTTGVLALPNSKLKKLPEEVLELSMLRILDLTGNHXXXXXXXXXXXXXXXXXXXXXXILETLPDLSALTGLTXXXXXXXXXXXIP--NVLPPKLIKLSLKNNRLSTVPCSVL-ALTQLQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVKLKMLSARRNTLVGQSAGAKVQSIAAELLGEDSAVQVMNLEGNPMTKEDLQKMDGFDAFLTRRTKLKNKEIHGGLNSDLSLCGL 276
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1217.1686.1 vs. uniprot
Match: A0A6A3UTM1_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UTM1_9STRA)

HSP 1 Score: 103 bits (258), Expect = 6.420e-21
Identity = 112/263 (42.59%), Postives = 135/263 (51.33%), Query Frame = 2 
Query:  383 KNKTGRKVTAQKIKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSNRLAGAGALGALPACLTKLMLRDNSLGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPALAELILDENSLRALGDELVGLSKLKKLSARSNRIAAVDPFSGQQSISRGLFA-DSAVEALELAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD 1168
            K KTGR V  QK+K+A ATGVLAL    LK++PE L  L  +RT     XXXXXXXXXXXXXXXXXXXXXXXXXX  +PDLS L +LT +    N L       ALP  LTKL ++ N L  VP +VL+ L  LQ                                                SAR N +      +  QSI+  L   DS+V+ + L GNP+ K DL  M+G D FL RR K KNK + GG    LS+CGL+
Sbjct:   18 KPKTGRSVQQQKLKSAKATGVLALPNSKLKKLPEELLELSAMRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSLPDLSGLEALTTLVLDCNMLEDIP--NALPPNLTKLSIKGNKLRAVPRSVLE-LAQLQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARRNTLVGRSAGAKVQSIAAELLGEDSSVQVMNLEGNPMTKEDLQGMDGFDAFLTRRTKLKNKEIHGGLNSDLSLCGLE 277
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1217.1686.1 vs. uniprot
Match: A0A662XQF7_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XQF7_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.470e-20
Identity = 116/271 (42.80%), Postives = 141/271 (52.03%), Query Frame = 2 
Query:  374 SAPKNKTGRKVTAQKIKTAGATGVLALQEHGLKEIPEGLFTLVKLRTLNMSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPDLSALSSLTDVSAGSNRLAGAG-AL----GALPACLTKLMLRDNSLGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPALAELILDENSLRALGDELVGLSKLKKLSARSNRIAAVDPFSGQQSISRGLFAD-SAVEALELAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD 1168
            S PKN  G  V  QK++TA ATGVLAL +  LK++P+ LFTL  LR+L+   XXXXXXXXXXXXXXXXXXXXXXXXX   +PDLSAL++LT V     +L   G AL     ALP  LTKL L+ N L  VP +++  L  L+                                                SAR N +        +Q I+  L  D S V+ L L GNP+ K DL  MEG D FL RR + KNK + GG    LS+CGLD
Sbjct:   21 SKPKNSRG--VQQQKLRTARATGVLALPDSKLKKLPDELFTLSALRSLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXIATLPDLSALTALTTVRVLCLKLVLDGNALEDLPNALPPNLTKLSLKGNRLRTVPHSIV-ALTQLREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARRNTLVGRSAGGSEQPIAAELLGDGSTVQVLNLEGNPMTKEDLQTMEGFDAFLTRRTQLKNKEIHGGLNSDLSLCGLD 288
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1217.1686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLP4_ECTSI2.070e-16196.28Leucine rich repeat protein n=2 Tax=Ectocarpus Tax... [more]
A0A836CA00_9STRA1.210e-3044.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2EAS0_TRICV5.090e-2834.57Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
H3GRI1_PHYRM1.470e-2343.73Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A225UJM0_9STRA4.620e-2342.49Putative LRR protein n=1 Tax=Phytophthora megakary... [more]
A0A5D6XNJ4_9STRA1.060e-2232.63Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S2PXK3_9STRA7.990e-2232.30Hypothetical protein (Fragment) n=2 Tax=Skeletonem... [more]
A0A3M6V6T7_9STRA1.410e-2141.22Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A6A3UTM1_9STRA6.420e-2142.59Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A662XQF7_9STRA1.470e-2042.80Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1217contigE-fasciculatus_F_contig1217:12965..18327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score481.1
Seed ortholog evalue3.7e-133
Seed eggNOG ortholog2880.D8LLP4
Preferred nameLRRC57
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLeucine rich repeat protein
Ec32 orthologEc-04_004990.1
Exons6
Model size2293
Cds size891
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1217.1686.1prot_E-fasciculatus_F_contig1217.1686.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1217 13245..17205 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927726.489169-UTR-E-fasciculatus_F_contig1217:12964..132441622927726.489169-UTR-E-fasciculatus_F_contig1217:12964..13244Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1217 12965..13244 +
1695995667.7559135-UTR-E-fasciculatus_F_contig1217:12964..132441695995667.7559135-UTR-E-fasciculatus_F_contig1217:12964..13244Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1217 12965..13244 +
1622927726.588507-UTR-E-fasciculatus_F_contig1217:17205..183271622927726.588507-UTR-E-fasciculatus_F_contig1217:17205..18327Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1217 17206..18327 +
1695995667.8155427-UTR-E-fasciculatus_F_contig1217:17205..183271695995667.8155427-UTR-E-fasciculatus_F_contig1217:17205..18327Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1217 17206..18327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927726.5080035-CDS-E-fasciculatus_F_contig1217:13244..133631622927726.5080035-CDS-E-fasciculatus_F_contig1217:13244..13363Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1217 13245..13363 +
1695995667.7658176-CDS-E-fasciculatus_F_contig1217:13244..133631695995667.7658176-CDS-E-fasciculatus_F_contig1217:13244..13363Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1217 13245..13363 +
1622927726.5257165-CDS-E-fasciculatus_F_contig1217:13913..140251622927726.5257165-CDS-E-fasciculatus_F_contig1217:13913..14025Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1217 13914..14025 +
1695995667.7738523-CDS-E-fasciculatus_F_contig1217:13913..140251695995667.7738523-CDS-E-fasciculatus_F_contig1217:13913..14025Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1217 13914..14025 +
1622927726.539344-CDS-E-fasciculatus_F_contig1217:14546..146451622927726.539344-CDS-E-fasciculatus_F_contig1217:14546..14645Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1217 14547..14645 +
1695995667.7817924-CDS-E-fasciculatus_F_contig1217:14546..146451695995667.7817924-CDS-E-fasciculatus_F_contig1217:14546..14645Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1217 14547..14645 +
1622927726.5528493-CDS-E-fasciculatus_F_contig1217:15213..153901622927726.5528493-CDS-E-fasciculatus_F_contig1217:15213..15390Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1217 15214..15390 +
1695995667.7897327-CDS-E-fasciculatus_F_contig1217:15213..153901695995667.7897327-CDS-E-fasciculatus_F_contig1217:15213..15390Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1217 15214..15390 +
1622927726.5658205-CDS-E-fasciculatus_F_contig1217:16042..162371622927726.5658205-CDS-E-fasciculatus_F_contig1217:16042..16237Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1217 16043..16237 +
1695995667.799743-CDS-E-fasciculatus_F_contig1217:16042..162371695995667.799743-CDS-E-fasciculatus_F_contig1217:16042..16237Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1217 16043..16237 +
1622927726.5780127-CDS-E-fasciculatus_F_contig1217:17016..172051622927726.5780127-CDS-E-fasciculatus_F_contig1217:17016..17205Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1217 17017..17205 +
1695995667.8076172-CDS-E-fasciculatus_F_contig1217:17016..172051695995667.8076172-CDS-E-fasciculatus_F_contig1217:17016..17205Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1217 17017..17205 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1217.1686.1

>prot_E-fasciculatus_F_contig1217.1686.1 ID=prot_E-fasciculatus_F_contig1217.1686.1|Name=mRNA_E-fasciculatus_F_contig1217.1686.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=297bp
MGNKESTHSSTFSRGQGATSDFRDALTSLPGSAPKNKTGRKVTAQKIKTA
GATGVLALQEHGLKEIPEGLFTLVKLRTLNMSSNSLKLLPGAISTLTKLK
TLRLDSNRLEAIPDLSALSSLTDVSAGSNRLAGAGALGALPACLTKLMLR
DNSLGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPALAELILDENS
LRALGDELVGLSKLKKLSARSNRIAAVDPFSGQQSISRGLFADSAVEALE
LAGNPLDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD*
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mRNA from alignment at E-fasciculatus_F_contig1217:12965..18327+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1217.1686.1 ID=mRNA_E-fasciculatus_F_contig1217.1686.1|Name=mRNA_E-fasciculatus_F_contig1217.1686.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5363bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1217:12965..18327+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATACTACAGCTGTACTCTGCACATTGGCATGAATATACATCTCCCGTGAA
CCTTCAAGCACCGCCACGACTGCATACGGTGCCAGCGCACTGTGTTTCCC
AGGTCGGGGTGCAGCATCAGTTTGAGTCTGAATCCCGCAAGGAACAGACA
GGAAAACAGCAGTCACGGTGACTGCACAGCAGTATTAGGAGTACGTGGGA
GAACACGGGCAGAACAGAACTTCAAGTTCTCCTGTCCTGCTGCGAGAGCT
TGCTGGGGAAGAACAAGACTCGACAGCAGCATGGGGAACAAGGAATCGAC
GCATTCCTCCACGTTCTCAAGGGGCCAGGGCGCCACATCAGACTTCCGGG
ATGCCTTGACGAGCTTGCCAGGCAGCGCTCCCAAGAACAAGACCGGCAGG
TACGTGTACAAATGAAGGCAAACGACCGCGCTTACTTGCTCGCGCTGCTG
CCGATGCTGTCGTTCTGGGCGTGGAGCAGGTTGCGTAGTACCTTACTGCG
GACCTTTGTGAAACTGGGTAGCCAGCGCAAGCGCACCATGTTTGCGGAGC
CAGAGAAGTTCCTCGTCCGGTTCAGCGCAGAAAATGTACATTTTTTGTCC
ACACGACCCTACCTCCCCATCGCCGACCCCTCTTCCTCCAAACCTCATCA
GCAACAGCAGTGGGGCACTTATCTGTATTTTGGTGTCCAGCAAGAGTTTT
GAGGGAGATTCTTGAGATTCTAATCCTGCAACATTCACTACACAAGCATT
GAAGGCGCAACTCTGAGCTGTTGTTCTTTCCCATCATCTCCCCCCCTCCC
TCTCACGCAAACACGAAAGACCCTCTTGCGCTCCTCTGGCGTGCCTACGA
CTGCATACCATCACAATAGTTGTCTAGTTTTATCGCCATCCGGCGCCATC
GCTGACCTCCCCAGAATCGATGCCATCGCTCTGTGATCCAATCACGCAGG
AAAGTGACGGCCCAAAAGATAAAGACAGCGGGAGCCACAGGCGTGCTGGC
ACTGCAAGAGCATGGCCTTAAGGAAATACCAGAGGGGTTGTTCACGCTGG
TCAAGCTCAGGGTGAGATACGGACGGGAACGTGCGAGCAGAATGCCACAA
GAACGGCTGGAGTGTATCCATAGGGGGCTTAGCTCTATCGATCAGCAAGG
ATCAACGTTTTGTGCGAGTTTTCTGTGTTTCCTCTTGGGCGCTAGCAGTT
TCAGTGTCATTGGCTGGTGCGTCCAACATACACAGAATCGGGAAGACTCA
CGGCGGAATGTATGTGGCGGAAACACACACACCCTATTGTACGTATTGTA
CATAGATCATGACATTCAGAGGCATTTTCTGTTTTCAGCCGCACTGAGAC
TGGCGAGTTTTCACTGGTCAGCCGATAAGCGCGGTCGTTGTTGTTGTTGT
TGTTGTTGTTGTAGTTGCTGCTGTCTTCACAAGTCGTTGCTTCTAAAATA
TGCCTACAATTTACACGCATGCTTGGCCCCCTCCTCGAATCGGGTGGGTA
AACAACTATGCTGCCTGTCGGTGCTTGTATTTTGTGTGTGTGTGTGTGTG
TGCGTTGCGCCGTGGTTGCTCCTCCTGTACAGACGTTAAACATGTCGTCC
AACTCCCTCAAGCTCCTGCCGGGGGCGATAAGCACCCTCACCAAGCTCAA
GACCCTGCGACTCGATTCCAACAGGCTCGAGGTGCGTACCTCTTCCCACT
GACTGTTGCCGGCGTCTGCCCGCGTGAAACGTTTCTTTCCCCGGGCGGAG
GAAAACTAACAAACCGTGGACCCGTGTGTCGGCATGACTGTGCGTTATAC
TCGTCTCTCTCCTGTAGTTGAGTTTGTGAGTGTTTCTGTAGTTGGCAGGA
ACCCCTGGAACGACTGGCAAAACCGTGGCGCGCTGTACCTACGGCTTAAC
AAACGACAGCGTGCGACTGGCCTCCGCCCTCCCCCGCTCCAACTGCAATG
GGATGCGCGTGAAAAGACCCAGAGACTGAGACATTCAGCTCTTAAAGCAC
CTCGCAAAAAGCCCTGCTTTGAAGAAGCTGGAAGAATGGTAACATGAGTG
ACGTCGCTTGTAGCAGGGCCAACAAAAGGAACTATGCATACGTACAAATT
CACCTCCGCATCTCCTCCCCCGCCACCCGCGCCGTCTTGAAGAATGATTT
CGTGGCCAATGGCCCAAAACCCCAGGATAGCCAACCATTGAGGATGACCC
CCACTTCCCCCCGCGACCCTGTCTCACGGGTTTGGTCGGTGCTGTGCAGG
CTATCCCGGACCTCAGCGCGCTTTCTTCCCTGACGGACGTCTCCGCGGGA
TCGAACCGGCTCGCCGGGGCAGGAGCTTTGGGGGCGCTGCCGGCGTGCCT
GACGAAGCTGATGCTGCGGGATAACAGCCTGGGGGAGGTGCCGGCAGCGG
TGCTGGACGGGCTTCCGGCACTTCAGGTCAACACCCGAAAGCAGCATGGA
TCCCTTGATCAGTCGGGGTTTTTTGGGGGGGGAGAGGAGGGTGCGGGGAA
AATATGTTGCCTCGACATGGTGCGTTAGAAGCGCGTTACTGCCATCCGAC
CTTTTCGAAATGTGTTGGTGCTTGGAGAAGAAGGTACAAGGCGATGCCTA
CAAGTACTGCTGTTGGAGTCACTCAAACACACTTGTCGGCACGTTGCGGA
GAAACGTCGAAGAGCCTGAACATGGGCGGGCTTTGACGGGGGATTGACTT
CGTGAGTCTTCCTCTCAAGAATAATTAGTCTTGCTACACCGCGGGTTGTC
CCCATATAGTCTTGACAGCGTGCTTTTCTGTAACGGCGGAGTTGGCCATC
AATGAGAAGGCTCCGAAACACTAGCTGCGCTTAAGCTAGATTGACTTGCG
TTTCCTGGCGTGAATGCTGGGGGAGTTGGCTTGGAGCATCGGATTCGCGC
TGGCATGACGCTCTCTGCGCCAGCAGCGAAGCAACTATTGTAGAGCACAA
TCAGCCGGTGGTTGAACGGTCAACATCAGCAATGACCCATTTCAATCGCA
ATGCCGGAGCACGAGGCGTTGCGATTCAACATTTCAACACACTAACCCGC
ACCCGTTCGTGATCCGTGGCCGAACCAGGTGCTGGACCTATCAGCAAACG
GGATCGAAGGTCTGCCACCCTTCGGAGCCACGCTTCCGGCGCTGGCGGAG
CTCATCCTGGACGAGAACTCGTTGCGGGCATTGGGAGACGAGCTGGTGGG
GCTGTCGAAGCTCAAGAAGCTCTCGGCGAGGTCGAACCGCATCGCGGCCG
TGGACCCGTTCAGCGGGCAACAGGTAGTCAGTCATTAGCGAGAAAAATAA
AGTAGCGACATAGAAAAGAGTTTTGCTGTTCTCCATCTGGGGATGTCTTT
CCTTTTAAGCGTGTGTATCGATAGGCTGATGTCGCACGGTGTATGGGGAG
AGCAGCGCGTAGGAGGTACTTTTGTGTGTTGACGTTGATTGTGGTTTTCA
AAATTCAGCTGCAAATCACTGTACGTGCGCACGCAATTTGCCACACCCGA
CCTTGCCCTTGGTACTGTCTCCTTCTTCCGCGGCTGCTGTTTTCGACCGT
GGCGATTTCCCGAGGATTGCTGTTTCGCTTTACGAATTGCTGTTGTCTCC
ACATGAACAACCGTTCCGATCTCTCTCTCTATCCAGTACATACCCCCTCT
GCCCGTACTGATCCAACACTTAACTTAGCGCGGTCTACTTCAACGAAAAT
TGTTGACTGATGTATTGTGCGGTGTCCATAGTTGATTTCACGAGCGGGGT
CTTTGGTCGCTTGTGTCCGCGCTCCTCCCGGTACCCAGGCGTGTCAGTAT
TCTCCCTCGCCCGTTGGTCTCCCGAGCTTGCCGTTCATCTTTCGGAAGCA
AAGCATTGCCCTTGCCCGCTACACCCTCGTACCCCGGCCTTCCTGGGCTT
CTGAAAACATCGTGCACGTACATAAGGAGCACGAAACCTGCGCGTAAAGC
TGCTAGTGTGATACCCACCCCGAAAAACAACCGTGTTTGCTGCACTCTCT
TTTTTTTTTTTGCACGACCGCCCCTGCCGCCGCACGCTTGTTCGGGTCGC
AGTCCATATCTCGAGGGCTGTTCGCCGACTCTGCCGTGGAGGCCCTAGAG
CTCGCGGGAAACCCCCTCGACAAGACGGACCTGATGCGCATGGAAGGGGT
CGACGACTTCCTGGCCCGCAGAGAGAAGAACAAGAACAAGAACTTGCAGG
GGGGAGGGATGCTGACGCTGTCTGTCTGCGGCCTGGATTAACAAGCGTTT
CGCTGTCATTTATTGAGCCTCCGCCCGGGGGGAGGGGTGGTACCACCGCA
ATGGCCTGCGGCGGTGAATATATGATTTGTTTATTGGTTGGAGGTTTTCG
TTTTCGTCATAAGTCTGTATGTAGTGCCTCCGACATAGATACCCTTCAAG
AGAGCGAAAAGGTGCCGGCAGTTGTCTGATTGGCCACTTTGTTTCGTGCC
CCATTGATGAAGGGCAAAGTAGGCGCAGCCAAAGGCGCAGCCAAAGGCGC
AGCCAAAGGCGCGCGCTTGTTTGCTATGTATCCCCATGCCTTTTTCGTCT
TGGGTTATTGTTCTTGTGTATTTTTTTCGGGACGTGGTTCGTGGGAGGCT
GTGTGTGGCACGCTTGAGTTCACTGCTGCACGGCAAGTACATCCATGTGA
CGGCATAAATGTGTACCAGCCCTCCTCGTGCAGCCGCAGGCTGCAGCGGT
TCCCGAGTAAGGGTAGGCTGAAGCACCGGGGGGGTTTTGTCCATACTGGT
ATTTGAGTGTAGCTTGAGTGGTGGCATCGACAACAACCTTTTGATTGCTT
TTTTTTCGTCTCATCTCCTTCCTGTGGTATTATTGTTGTGGCCCTGTTTC
ATCTCCACGCAGACTTTGTTTTTCAATACCCCTTGTGCGGTTCGCACCTA
GATGTGTACGAGCTTTTGGGCAACTTGCGGTTTACGTTTTGTTTTTTGTG
CCTCGACGGTGACGGGCCCATCGCTTCCCATGAGTTGCGATCGCTGAGAT
CACGGTCGCCACAGGCTGGTACCCTCCGTCCAGAAGGGCTTTGTTGTGGT
GGTTGATGCGACCGTTGTCGATGATTCCGCCCCGAACGGCTGCTGTCGTC
TGTGTGTGATGGCGGTGTGGTTGCCTTCCGGAAGGGCTGTTACAGAAGCA
TCAGGGCGGCTTCGTTGACGGAGGGAGGAGGAGAAGGGCATAGCTGCTGC
CCCAAGTTGCGCGCTGTTCATGAAAGTACGTCTGTAAGATTCACTACAGT
AGCACGACGTGTACCTTTCCATGTGTGGTACAACAGCATGCAGAATCGAT
GAGGTTTTTTCTGCCATGTGCCACCACCAAGAAGCAAAGAATCGATGAGG
GTGAGGGTGAGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1217:12965..18327+

>mRNA_E-fasciculatus_F_contig1217.1686.1 ID=mRNA_E-fasciculatus_F_contig1217.1686.1|Name=mRNA_E-fasciculatus_F_contig1217.1686.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1782bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1217:12965..18327+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGAACAAGGAATCGACGCATTCCTCCACGTTCTCAAGGGGCCAGGG
CGCCACATCAGACTTCCGGGATGCCTTGACGAGCTTGCCAGGCAGCGCTC
CCAAGAACAAGACCGGCAGATGGGGAACAAGGAATCGACGCATTCCTCCA
CGTTCTCAAGGGGCCAGGGCGCCACATCAGACTTCCGGGATGCCTTGACG
AGCTTGCCAGGCAGCGCTCCCAAGAACAAGACCGGCAGGAAAGTGACGGC
CCAAAAGATAAAGACAGCGGGAGCCACAGGCGTGCTGGCACTGCAAGAGC
ATGGCCTTAAGGAAATACCAGAGGGGTTGTTCACGCTGGTCAAGCTCAGG
GAAAGTGACGGCCCAAAAGATAAAGACAGCGGGAGCCACAGGCGTGCTGG
CACTGCAAGAGCATGGCCTTAAGGAAATACCAGAGGGGTTGTTCACGCTG
GTCAAGCTCAGGACGTTAAACATGTCGTCCAACTCCCTCAAGCTCCTGCC
GGGGGCGATAAGCACCCTCACCAAGCTCAAGACCCTGCGACTCGATTCCA
ACAGGCTCGAGACGTTAAACATGTCGTCCAACTCCCTCAAGCTCCTGCCG
GGGGCGATAAGCACCCTCACCAAGCTCAAGACCCTGCGACTCGATTCCAA
CAGGCTCGAGGCTATCCCGGACCTCAGCGCGCTTTCTTCCCTGACGGACG
TCTCCGCGGGATCGAACCGGCTCGCCGGGGCAGGAGCTTTGGGGGCGCTG
CCGGCGTGCCTGACGAAGCTGATGCTGCGGGATAACAGCCTGGGGGAGGT
GCCGGCAGCGGTGCTGGACGGGCTTCCGGCACTTCAGGCTATCCCGGACC
TCAGCGCGCTTTCTTCCCTGACGGACGTCTCCGCGGGATCGAACCGGCTC
GCCGGGGCAGGAGCTTTGGGGGCGCTGCCGGCGTGCCTGACGAAGCTGAT
GCTGCGGGATAACAGCCTGGGGGAGGTGCCGGCAGCGGTGCTGGACGGGC
TTCCGGCACTTCAGGTGCTGGACCTATCAGCAAACGGGATCGAAGGTCTG
CCACCCTTCGGAGCCACGCTTCCGGCGCTGGCGGAGCTCATCCTGGACGA
GAACTCGTTGCGGGCATTGGGAGACGAGCTGGTGGGGCTGTCGAAGCTCA
AGAAGCTCTCGGCGAGGTCGAACCGCATCGCGGCCGTGGACCCGTTCAGC
GGGCAACAGGTGCTGGACCTATCAGCAAACGGGATCGAAGGTCTGCCACC
CTTCGGAGCCACGCTTCCGGCGCTGGCGGAGCTCATCCTGGACGAGAACT
CGTTGCGGGCATTGGGAGACGAGCTGGTGGGGCTGTCGAAGCTCAAGAAG
CTCTCGGCGAGGTCGAACCGCATCGCGGCCGTGGACCCGTTCAGCGGGCA
ACAGTCCATATCTCGAGGGCTGTTCGCCGACTCTGCCGTGGAGGCCCTAG
AGCTCGCGGGAAACCCCCTCGACAAGACGGACCTGATGCGCATGGAAGGG
GTCGACGACTTCCTGGCCCGCAGAGAGAAGAACAAGAACAAGAACTTGCA
GGGGGGAGGGATGCTGACGCTGTCTGTCTGCGGCCTGGATTAATCCATAT
CTCGAGGGCTGTTCGCCGACTCTGCCGTGGAGGCCCTAGAGCTCGCGGGA
AACCCCCTCGACAAGACGGACCTGATGCGCATGGAAGGGGTCGACGACTT
CCTGGCCCGCAGAGAGAAGAACAAGAACAAGAACTTGCAGGGGGGAGGGA
TGCTGACGCTGTCTGTCTGCGGCCTGGATTAA
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