mRNA_E-fasciculatus_F_contig12168.1684.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-fasciculatus_F_contig12168.1684.1
Unique Name	mRNA_E-fasciculatus_F_contig12168.1684.1
Type	mRNA
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)

Homology

[Close]

BLAST of mRNA_E-fasciculatus_F_contig12168.1684.1 vs. uniprot
Match: D8LCI6_ECTSI (zinc_ribbon_16 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCI6_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 1.200e-63
Identity = 117/135 (86.67%), Postives = 121/135 (89.63%), Query Frame = 1

Query:    1 HT-KPLPRCFICLQQIGTLNPETEARRRQFSQLKGGPAGARTSFRGGGSVGCG-HETPGGGXXXXXXXXXXXXALGQQGAPQAALDIWWSWCNVXXXXXXXXHLEDWFAEHDTCGMRGCDCKCTSHDFPIVSRIA 399
            HT KPLPRCFICLQQIGTLNPETEARRRQFSQLKGGPA ART+FRGG  VG G +E  GGGXXXXXXXX    ALGQQGAPQAALDIWWSWCNV XXXXXX HLEDWFAEHDTCG+RGCDCKCTSHDFPIVS+IA
Sbjct:   16 HTLKPLPRCFICLQQIGTLNPETEARRRQFSQLKGGPASARTNFRGGLGVGSGGYEASGGGXXXXXXXXAAAAALGQQGAPQAALDIWWSWCNVCXXXXXXGHLEDWFAEHDTCGVRGCDCKCTSHDFPIVSKIA 150

[Close]

BLAST of mRNA_E-fasciculatus_F_contig12168.1684.1 vs. uniprot
Match: A0A6H5KJL9_9PHAE (zinc_ribbon_16 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJL9_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 1.270e-55
Identity = 107/131 (81.68%), Postives = 110/131 (83.97%), Query Frame = 1

Query:   10 PLPRCFICLQQIGTLNPETEARRRQFSQLKGGPAGARTSFRGGGSVGCG-HETPGGGXXXXXXXXXXXXALGQQGAPQAALDIWWSWCNVXXXXXXXXHLEDWFAEHDTCGMRGCDCKCTSHDFPIVSRIA 399
            PLPRCFICLQQIGTLNPETEARRRQFSQLK G AGARTS+RGG  VG G HE PG       XXXXXXXALGQQGAPQAALDIWWSWCNV    XX  HLEDWFAEHDTCG+RGCDCKCTSHD PIVS+IA
Sbjct:  352 PLPRCFICLQQIGTLNPETEARRRQFSQLKAGAAGARTSYRGGIGVGSGGHEAPG-------XXXXXXXALGQQGAPQAALDIWWSWCNVCNHGXXNGHLEDWFAEHDTCGVRGCDCKCTSHDLPIVSKIA 475

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig12168.1684.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig12168.1684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LCI6_ECTSI	1.200e-63	86.67	zinc_ribbon_16 domain-containing protein n=1 Tax=E...	[more]
A0A6H5KJL9_9PHAE	1.270e-55	81.68	zinc_ribbon_16 domain-containing protein n=1 Tax=E...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-fasciculatus_F_contig12168	contig	E-fasciculatus_F_contig12168:1953..3894 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	71.2
Seed ortholog evalue	4e-10
Seed eggNOG ortholog	159749.K0STE1
Preferred name	MIOS
KEGG ko	ko:K20407
KEGG Pathway	ko04150,map04150
GOs	GO:0000003,GO:0000306,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0001674,GO:0001709,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005765,GO:0005767,GO:0005773,GO:0005774,GO:0005776,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008361,GO:0009267,GO:0009605,GO:0009653,GO:0009892,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0009994,GO:0010506,GO:0010507,GO:0010564,GO:0010646,GO:0010647,GO:0016020,GO:0016043,GO:0016567,GO:0016740,GO:0019222,GO:0019538,GO:0019787,GO:0019898,GO:0019953,GO:0022412,GO:0022414,GO:0023051,GO:0023056,GO:0030054,GO:0030154,GO:0030716,GO:0031090,GO:0031312,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031503,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032006,GO:0032008,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032991,GO:0033036,GO:0033043,GO:0033554,GO:0034198,GO:0034613,GO:0034629,GO:0034641,GO:0035859,GO:0036211,GO:0040020,GO:0042594,GO:0043073,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044754,GO:0045165,GO:0045793,GO:0046483,GO:0046872,GO:0046914,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051445,GO:0051641,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0061630,GO:0061659,GO:0061700,GO:0065007,GO:0065008,GO:0070013,GO:0070647,GO:0070727,GO:0071496,GO:0071704,GO:0071840,GO:0090066,GO:0090304,GO:0097042,GO:0098588,GO:0098805,GO:0098852,GO:0140096,GO:1901360,GO:1901564,GO:1902531,GO:1902533,GO:1903432,GO:1904263,GO:1990928,GO:2000241
EggNOG free text desc.	Zinc-ribbon like family
EggNOG OGs	2XGG2@2836,KOG1008@1,KOG1008@2759
COG Functional cat.	S
Best tax level	Bacillariophyta
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001
Hectar predicted targeting category	other localisation
Ec32 ortholog description	conserved unknown protein
Ec32 ortholog	Ec-03_002770.1
Exons	2
Model size	1080
Cds size	402
Stop	1
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig12168.1684.1	prot_E-fasciculatus_F_contig12168.1684.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	polypeptide	E-fasciculatus_F_contig12168 1953..3216 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927726.2168467-CDS-E-fasciculatus_F_contig12168:1952..2227	1622927726.2168467-CDS-E-fasciculatus_F_contig12168:1952..2227	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig12168 1953..2227 +
1695995667.5819638-CDS-E-fasciculatus_F_contig12168:1952..2227	1695995667.5819638-CDS-E-fasciculatus_F_contig12168:1952..2227	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig12168 1953..2227 +
1622927726.2289028-CDS-E-fasciculatus_F_contig12168:3089..3216	1622927726.2289028-CDS-E-fasciculatus_F_contig12168:3089..3216	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig12168 3090..3216 +
1695995667.594868-CDS-E-fasciculatus_F_contig12168:3089..3216	1695995667.594868-CDS-E-fasciculatus_F_contig12168:3089..3216	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	CDS	E-fasciculatus_F_contig12168 3090..3216 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927726.2461247-UTR-E-fasciculatus_F_contig12168:3216..3894	1622927726.2461247-UTR-E-fasciculatus_F_contig12168:3216..3894	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig12168 3217..3894 +
1695995667.6096141-UTR-E-fasciculatus_F_contig12168:3216..3894	1695995667.6096141-UTR-E-fasciculatus_F_contig12168:3216..3894	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig12168 3217..3894 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-fasciculatus_F_contig12168:1953..3894+
coding sequence from alignment at E-fasciculatus_F_contig12168:1953..3894+

protein sequence of mRNA_E-fasciculatus_F_contig12168.1684.1

>prot_E-fasciculatus_F_contig12168.1684.1 ID=prot_E-fasciculatus_F_contig12168.1684.1|Name=mRNA_E-fasciculatus_F_contig12168.1684.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=134bp
HTKPLPRCFICLQQIGTLNPETEARRRQFSQLKGGPAGARTSFRGGGSVG
CGHETPGGGGGRGGAGGGGGAALGQQGAPQAALDIWWSWCNVCNHGGHNG
HLEDWFAEHDTCGMRGCDCKCTSHDFPIVSRIA*

mRNA from alignment at E-fasciculatus_F_contig12168:1953..3894+

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-fasciculatus_F_contig12168.1684.1 ID=mRNA_E-fasciculatus_F_contig12168.1684.1|Name=mRNA_E-fasciculatus_F_contig12168.1684.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1942bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12168:1953..3894+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACACAAAGCCCCTCCCGAGGTGCTTCATCTGCCTGCAGCAGATCGGGAC
CCTCAATCCCGAGACGGAGGCCAGACGACGACAGTTCAGCCAGCTCAAGG
GGGGCCCCGCGGGTGCAAGGACTAGCTTCAGAGGGGGGGGCAGCGTGGGC
TGCGGGCACGAAACACCCGGCGGCGGGGGGGGGCGAGGAGGCGCGGGGGG
GGGTGGTGGTGCTGCACTTGGCCAACAGGGGGCTCCGCAAGCTGCGTTGG
ATATATGGTGGAGCTGGTGCAACGTGTAAGTTGCTGTACGGCAGTTTTTT
ATTCATTGGTGATTAATTCGTCATGCGTGGGAGTTCCACAACTTTTCTTG
TTGGCTTGTTTCTTTGTTTCTTTGGTGGACAAGGCAGGCAACAGCCCCCG
TTGCGGCTGGCGTTGAAAAATGCCGCTTGGAAACGTATGCCTTGACGTGG
ATGCGTCGCAACAGTGCTTGTTGCGCGTGAGCACGCGACGCGCGGTATTC
GTCGGCAGCAACCTTGATGTCACACGCGTCGCGTTGCACACGAACAAAAT
AGCATTTTTGCAAGCCTAAATGCGCCGCATCAAGTTTTGGCGTCTGAGTT
ACCACAGGCAAAAGTCGGACGGTTCGTGCGCATGTTGAGACTGCTTTGCA
CGAGGGCATCGTTTCACTCTGTCCGCGGTCGTTGCACTTTTGCGTTTCAT
AGCGTAGGTGACATGACGCAACATATCGCACCCCCTGGACCGATTTTCAA
AGCTCGGTTACTCCGCGATGAAGATGGTGATGCTTAGATTGGAACGATAC
GTTCACAGGAAGCGCTCTCGATGAGACGGTTCGAAAGGCTTTTTTCGGCA
CCGCCACTCAGTCTGCTGCGGCGAATCTAAGCTCTAAAGCTTTTATCGGA
CCACAAGGTGGCCATGTCTTGCGTCACCTGCGGTATAGCTCGTTGCACGG
AAACATGTTTCCTTGGCGCTCGCGAGCAACTTGTGGCATATCGCTCTCTC
ACCATGTATGTCCCTCTAAATGCACTTGCCTTTTACGCGTTCGTTTCTCA
CGTGTTCTTCTGGATGTGATGTGCCTGTGGTTTTTGAGCTAAAAATTATG
CGGAAAAACAACCTCGGCGTTTGATTGGTTCGTTCAGGTGCAACCACGGC
GGGCACAACGGGCACCTCGAAGATTGGTTCGCCGAGCACGACACCTGCGG
GATGCGGGGCTGCGACTGCAAGTGTACCTCCCACGACTTCCCCATCGTCT
CCAGGATAGCGTAGGCATAGCCCATCACACTCATAGTCGTGCATGCTGTA
GTCGTTAGGCCATTGGACCTCGGGGGGTAGGGAGGGGGGCTTGTAAACTG
TTCGACGTGCTCGTGCCTAGGCTTGGCCGAGTTGCGGTGAAAAGTAAAGA
GCTCGTGTAGAAAACGGTTTTCATGGAGATGCATCTGGCACCCGTAGACG
GGTTCCTCTGGCCTCTCATCGGGGGGTAGCTGGTGTGGTTGACCCTGAGG
AGCCCCGGTTGTAACTTGTAACATAGCAACGTAAGGTTTTGTCACTCGGT
GTCGTAAAGTTGCGTAGTTTGGTTTTGCTATGCCTCTCGCGGGCGCGGCA
GTGTAGTGTAGCTATGCCCCTTCGTGGCCGCGGCAGTCTAGTGTAGTTTG
TTGTAGGTCCCATTTGCTTGTTTTTCGTTTCGGACGACGGCACGTTTTAT
AAGTGCGCCGCTATAGCACGGGACTCGTTTCGCTCCGTGATAGAACTAAC
AAGTATCATCAGTCACTCACGGCGAATTTGAATTTTCGAGTTTTTCCGAG
ATGTAACGTCATGACGTCATGACCATGGCTGACGTCATCGCTTCACCATG
GACTTTTCGAGCAAGGGAAATTTCGTTCCTAAAAAGTTGTCCAATCATCA
TGCGGCAGGGGAGGCTTTGCCGGGAGCAACAATAGTTTACGC

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12168:1953..3894+

>mRNA_E-fasciculatus_F_contig12168.1684.1 ID=mRNA_E-fasciculatus_F_contig12168.1684.1|Name=mRNA_E-fasciculatus_F_contig12168.1684.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=804bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12168:1953..3894+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACACAAAGCCCCTCCCGAGGTGCTTCATCTGCCTGCAGCAGATCGGGAC
CCTCAATCCCGAGACGGAGGCCAGACGACGACAGTTCAGCCAGCTCAAGG
GGGGCCCCGCGGGTGCAAGGACTAGCTTCAGAGGGGGGGGCAGCGTGGGC
TGCGGGCACGAAACACCCGGCGGCGGGGGGGGGCGAGGAGGCGCGGGGGG
GGGTGGTGGTGCTGCACTTGGCCAACAGGGGGCTCCGCAAGCTGCGTTGG
ATATATGGTGGAGCTGGTGCAACGTCACACAAAGCCCCTCCCGAGGTGCT
TCATCTGCCTGCAGCAGATCGGGACCCTCAATCCCGAGACGGAGGCCAGA
CGACGACAGTTCAGCCAGCTCAAGGGGGGCCCCGCGGGTGCAAGGACTAG
CTTCAGAGGGGGGGGCAGCGTGGGCTGCGGGCACGAAACACCCGGCGGCG
GGGGGGGGCGAGGAGGCGCGGGGGGGGGTGGTGGTGCTGCACTTGGCCAA
CAGGGGGCTCCGCAAGCTGCGTTGGATATATGGTGGAGCTGGTGCAACGT
GTGCAACCACGGCGGGCACAACGGGCACCTCGAAGATTGGTTCGCCGAGC
ACGACACCTGCGGGATGCGGGGCTGCGACTGCAAGTGTACCTCCCACGAC
TTCCCCATCGTCTCCAGGATAGCGTAGGTGCAACCACGGCGGGCACAACG
GGCACCTCGAAGATTGGTTCGCCGAGCACGACACCTGCGGGATGCGGGGC
TGCGACTGCAAGTGTACCTCCCACGACTTCCCCATCGTCTCCAGGATAGC
GTAG