mRNA_E-fasciculatus_F_contig12163.1683.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12163.1683.1
Unique NamemRNA_E-fasciculatus_F_contig12163.1683.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12163.1683.1 vs. uniprot
Match: D7FNE7_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE7_ECTSI)

HSP 1 Score: 384 bits (986), Expect = 2.570e-126
Identity = 202/203 (99.51%), Postives = 203/203 (100.00%), Query Frame = 1 
Query:    1 QARAHLSELMHYCRDQVSLLALVDDNMAAQEAALRDKADVLVATPARLVAHLKAGNVELKDTVETLVVDEADLVLSFGYSEDIRAVTKRLPKICQGFLMSATLSAELEDLKRVVLHSPAVLKLEEGARDGRLAQFYLSLADKGDKFLVVFAFIKLGLLEGKGLFFVNETESSYRLKLFLEQFHVRSAVLNAELPLNSRLHILQ 609
            QARAHLSELMHYCRDQVSLLALVDDNMAAQEAALRDKADVLVATPARLVAHLKAGNVELKDTVETLVVDEADLVLSFGYSEDIRAVTKRLPKICQGFLMSATLSAELEDLKRVVLHSPAVLKLEEGARDGRL+QFYLSLADKGDKFLVVFAFIKLGLLEGKGLFFVNETESSYRLKLFLEQFHVRSAVLNAELPLNSRLHILQ
Sbjct:  137 QARAHLSELMHYCRDQVSLLALVDDNMAAQEAALRDKADVLVATPARLVAHLKAGNVELKDTVETLVVDEADLVLSFGYSEDIRAVTKRLPKICQGFLMSATLSAELEDLKRVVLHSPAVLKLEEGARDGRLSQFYLSLADKGDKFLVVFAFIKLGLLEGKGLFFVNETESSYRLKLFLEQFHVRSAVLNAELPLNSRLHILQ 339
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BLAST of mRNA_E-fasciculatus_F_contig12163.1683.1 vs. uniprot
Match: A0A6H5KX88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX88_9PHAE)

HSP 1 Score: 374 bits (961), Expect = 9.770e-125
Identity = 197/199 (98.99%), Postives = 199/199 (100.00%), Query Frame = 1 
Query:    1 QARAHLSELMHYCRDQVSLLALVDDNMAAQEAALRDKADVLVATPARLVAHLKAGNVELKDTVETLVVDEADLVLSFGYSEDIRAVTKRLPKICQGFLMSATLSAELEDLKRVVLHSPAVLKLEEGARDGRLAQFYLSLADKGDKFLVVFAFIKLGLLEGKGLFFVNETESSYRLKLFLEQFHVRSAVLNAELPLNSRL 597
            +ARAHLSELMHYCRDQVSLLALVDDNMAAQEAALRDKADVLVATPARLVAHLKAGNVELKDTVETLVVDEADLVLSFGYSEDIRAVTKRLPKICQGFLMSATLSAELEDLKRVVLHSPAVLKLEEGARDGRL+QFYLSLADKGDKFLVVFAFIKLGLLEGKGLFFVNETESSYRLKLFLEQFHVRSAVLNAELPLNSRL
Sbjct:  146 RARAHLSELMHYCRDQVSLLALVDDNMAAQEAALRDKADVLVATPARLVAHLKAGNVELKDTVETLVVDEADLVLSFGYSEDIRAVTKRLPKICQGFLMSATLSAELEDLKRVVLHSPAVLKLEEGARDGRLSQFYLSLADKGDKFLVVFAFIKLGLLEGKGLFFVNETESSYRLKLFLEQFHVRSAVLNAELPLNSRL 344
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BLAST of mRNA_E-fasciculatus_F_contig12163.1683.1 vs. uniprot
Match: A0A835ZDE1_9STRA (DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDE1_9STRA)

HSP 1 Score: 297 bits (761), Expect = 3.950e-94
Identity = 156/208 (75.00%), Postives = 175/208 (84.13%), Query Frame = 1 
Query:    1 QARAHLSELMHYCRDQVSLLALVDDNMAAQEAALRDKADVLVATPARLVAHLKAGNVELKDTVETLVVDEADLVLSFGYSEDIRAVTKRLPKICQGFLMSATLSAELEDLKRVVLHSPAVLKLEEG-----ARDGRLAQFYLSLADKGDKFLVVFAFIKLGLLEGKGLFFVNETESSYRLKLFLEQFHVRSAVLNAELPLNSRLHILQ 609
            Q R  L ELM YCRD V LLALVDDNM+AQ+A LRDK D++VATPARLVAHLKAGN+ LKD VETLVVDEADLVLS+GY +DIR VT  LPK+CQGFLMSATLS ELE+LKRV+LHSPA+LKLEEG        G L QF+L+L +  DK LVVFAF+KLGLLEGKGLFFVN T++ YRLKLFLEQFH+RSAVLNAELPL SRLHIL+
Sbjct:  103 QVRGQLWELMAYCRDIVGLLALVDDNMSAQQAQLRDKPDIVVATPARLVAHLKAGNITLKDAVETLVVDEADLVLSYGYRDDIRHVTAHLPKVCQGFLMSATLSEELEELKRVILHSPAILKLEEGDASGGGEGGALLQFFLALREPADKNLVVFAFLKLGLLEGKGLFFVNATDACYRLKLFLEQFHIRSAVLNAELPLASRLHILE 310
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BLAST of mRNA_E-fasciculatus_F_contig12163.1683.1 vs. uniprot
Match: A0A4D9D1T0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1T0_9STRA)

HSP 1 Score: 256 bits (654), Expect = 2.040e-81
Identity = 135/200 (67.50%), Postives = 164/200 (82.00%), Query Frame = 1 
Query:   22 ELMHYCRDQVSLLALVDDN----MAAQEAALRDKADVLVATPARLVAHLKAGNVELKDTVETLVVDEADLVLSFGYSEDIRAVTKRLPKICQGFLMSATLSAELEDLKRVVLHSPAVLKLEEGARDGRLAQFYLSLADKGDKFLVVFAFIKLGLLEGKGLFFVNETESSYRLKLFLEQFHVRSAVLNAELPLNSRLHILQ 609
            +L +YCRD VS+ AL+       M+AQ+A LRD+ D+LVATP+RLV+HL+AGN+ LK +++TLV+DEADL+LSFGY ED++ V   LP+I QG LMSATLS EL+DLKRVVLHSPAVLKLEEG  DG L QFY+SL +  DK L+VF F+KLG+LEGKGLFFVN  ++ YRLKLFLEQF +RSAVLNAELPLNSRLH LQ
Sbjct:  133 DLTYYCRDVVSVQALLGGGDAAAMSAQQALLRDQPDLLVATPSRLVSHLQAGNISLKASLQTLVMDEADLILSFGYEEDVKRVVAALPRIYQGILMSATLSPELDDLKRVVLHSPAVLKLEEGRTDGELLQFYVSLPE-ADKLLLVFVFLKLGVLEGKGLFFVNGLDACYRLKLFLEQFSIRSAVLNAELPLNSRLHTLQ 331
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BLAST of mRNA_E-fasciculatus_F_contig12163.1683.1 vs. uniprot
Match: A0A5D6XSV1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XSV1_9STRA)

HSP 1 Score: 257 bits (657), Expect = 5.950e-79
Identity = 132/203 (65.02%), Postives = 166/203 (81.77%), Query Frame = 1 
Query:    1 QARAHLSELMHYCRDQVSLLALVDDNMAAQEAALRDKADVLVATPARLVAHLKAGNVELKDTVETLVVDEADLVLSFGYSEDIRAVTKRLPKICQGFLMSATLSAELEDLKRVVLHSPAVLKLEEGARDGRLAQFYLSLADKGDKFLVVFAFIKLGLLEGKGLFFVNETESSYRLKLFLEQFHVRSAVLNAELPLNSRLHILQ 609
            Q R H++ELM+YC D VSLLAL   +M AQ+A LRD  DV+VATP RLVAHL+AGN++LKD+V+TLV+DEADLVLSFGY EDIR +   LPK CQ F MSATLS ELE LK+ VLH+PAV+KLEEGA DG+L Q++L++    DK L+++A IKLG+++GK +FFVN TE++YRLKLF EQF ++SAVLNAELP NSR HI++
Sbjct:  110 QIRKHMAELMYYCSDVVSLLALGGQSMNAQQALLRDVPDVVVATPGRLVAHLEAGNIKLKDSVQTLVIDEADLVLSFGYGEDIRTIFNHLPKACQSFCMSATLSPELEKLKKSVLHNPAVVKLEEGATDGKLQQYFLAVP-AADKDLLLYALIKLGVVQGKVIFFVNSTEAAYRLKLFFEQFIIKSAVLNAELPHNSRQHIIE 311
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BLAST of mRNA_E-fasciculatus_F_contig12163.1683.1 vs. uniprot
Match: A0A662YEI0_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YEI0_9STRA)

HSP 1 Score: 256 bits (655), Expect = 2.680e-78
Identity = 133/203 (65.52%), Postives = 164/203 (80.79%), Query Frame = 1 
Query:    1 QARAHLSELMHYCRDQVSLLALVDDNMAAQEAALRDKADVLVATPARLVAHLKAGNVELKDTVETLVVDEADLVLSFGYSEDIRAVTKRLPKICQGFLMSATLSAELEDLKRVVLHSPAVLKLEEGARDGRLAQFYLSLADKGDKFLVVFAFIKLGLLEGKGLFFVNETESSYRLKLFLEQFHVRSAVLNAELPLNSRLHILQ 609
            Q R HL ELM+YC D VSLLAL   +M+AQ+A LRD  DVLVATP RLVAHL+AGN+ LKD+V+T+V+DEADLVLSFGY ED+RA+   LPK CQ F MSATLS ELE LKR VLH+PAV+KLEEGA DG+L QFYL + D  DK L+++A ++LG++ GK +FFVN T ++YRLKLF EQF ++SAVLNA+LP NSR HI++
Sbjct:  109 QTRRHLLELMYYCSDVVSLLALGGQSMSAQQALLRDAPDVLVATPGRLVAHLEAGNLTLKDSVQTVVIDEADLVLSFGYGEDVRAIFNALPKACQTFCMSATLSPELEKLKRSVLHNPAVVKLEEGATDGKLQQFYLPV-DAADKDLLLYALLRLGVVHGKVIFFVNTTATAYRLKLFFEQFVIKSAVLNAQLPHNSRQHIIE 310
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BLAST of mRNA_E-fasciculatus_F_contig12163.1683.1 vs. uniprot
Match: K3WG30_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WG30_GLOUD)

HSP 1 Score: 256 bits (655), Expect = 2.950e-78
Identity = 130/203 (64.04%), Postives = 165/203 (81.28%), Query Frame = 1 
Query:    1 QARAHLSELMHYCRDQVSLLALVDDNMAAQEAALRDKADVLVATPARLVAHLKAGNVELKDTVETLVVDEADLVLSFGYSEDIRAVTKRLPKICQGFLMSATLSAELEDLKRVVLHSPAVLKLEEGARDGRLAQFYLSLADKGDKFLVVFAFIKLGLLEGKGLFFVNETESSYRLKLFLEQFHVRSAVLNAELPLNSRLHILQ 609
            Q + H+SELM+YC D VSLLAL   +M AQ+A LRD  D+++ATP RLVAHL+AGN++LKD+V+TLV+DEADLVLSFGY EDIR +   LPK CQ F MSATLS ELE LK+ VLH+PAV+KLEEG  DG+L Q+YL ++ + DK L+++A IKLG++ GK +FFVN TE++YRLKLF EQF ++SAVLNAELP NSR HI++
Sbjct:  116 QTKRHMSELMYYCNDVVSLLALGGQSMNAQQALLRDVPDIIIATPGRLVAHLEAGNLKLKDSVQTLVIDEADLVLSFGYGEDIRTIFNHLPKACQNFCMSATLSPELEKLKKSVLHNPAVVKLEEGETDGKLQQYYLPVS-QADKELLLYALIKLGVIHGKVIFFVNTTEAAYRLKLFFEQFIIKSAVLNAELPHNSRQHIIE 317
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BLAST of mRNA_E-fasciculatus_F_contig12163.1683.1 vs. uniprot
Match: W7TVX7_9STRA (Putative atp-dependent rna helicase ddx56 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TVX7_9STRA)

HSP 1 Score: 257 bits (657), Expect = 3.100e-78
Identity = 136/200 (68.00%), Postives = 164/200 (82.00%), Query Frame = 1 
Query:   22 ELMHYCRDQVSLLALVDDN----MAAQEAALRDKADVLVATPARLVAHLKAGNVELKDTVETLVVDEADLVLSFGYSEDIRAVTKRLPKICQGFLMSATLSAELEDLKRVVLHSPAVLKLEEGARDGRLAQFYLSLADKGDKFLVVFAFIKLGLLEGKGLFFVNETESSYRLKLFLEQFHVRSAVLNAELPLNSRLHILQ 609
            +L +YCRD VS+ AL+       M+AQ+A LRD+ D+LVATP+RLV+HL+AGN+ LK +V+TLV+DEADL+LSFGY ED++ V   LP+I QG LMSATLS EL+DLKRVVLHSPAVLKLEEG  DG L QFY+SL +  DK L+VF F+KLG+LEGKGLFFVN  ++ YRLKLFLEQF +RSAVLNAELPLNSRLH LQ
Sbjct:  133 DLTYYCRDVVSVQALLGGGDAAAMSAQQALLRDQPDLLVATPSRLVSHLQAGNISLKASVQTLVMDEADLILSFGYEEDVKRVVAALPRIYQGILMSATLSPELDDLKRVVLHSPAVLKLEEGRTDGELLQFYVSLPE-ADKLLLVFVFLKLGVLEGKGLFFVNGLDACYRLKLFLEQFSIRSAVLNAELPLNSRLHTLQ 331
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BLAST of mRNA_E-fasciculatus_F_contig12163.1683.1 vs. uniprot
Match: A0A2D4BSN8_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BSN8_PYTIN)

HSP 1 Score: 256 bits (653), Expect = 7.020e-78
Identity = 132/203 (65.02%), Postives = 165/203 (81.28%), Query Frame = 1 
Query:    1 QARAHLSELMHYCRDQVSLLALVDDNMAAQEAALRDKADVLVATPARLVAHLKAGNVELKDTVETLVVDEADLVLSFGYSEDIRAVTKRLPKICQGFLMSATLSAELEDLKRVVLHSPAVLKLEEGARDGRLAQFYLSLADKGDKFLVVFAFIKLGLLEGKGLFFVNETESSYRLKLFLEQFHVRSAVLNAELPLNSRLHILQ 609
            Q R H+SELM+YCRD VS+L L   +M+AQ+A LRD  D++VATP RLVAHL+AGN+ LK++V+T+V+DEADLVLSFGY EDIR++   LPK CQ F MSATLS ELE LKR VLH+ AV+KLEEGA DGRL Q+YLS+    DK L+++A +KLG++ GK LFFVN TE++YRLKLF EQF ++S VLNAELP NSRLHI++
Sbjct:  113 QTRKHISELMYYCRDIVSVLGLGGQSMSAQQALLRDVPDIVVATPGRLVAHLEAGNLALKESVQTVVIDEADLVLSFGYGEDIRSIYNHLPKACQTFCMSATLSPELEKLKRSVLHNAAVVKLEEGASDGRLQQYYLSVPGT-DKDLLLYALLKLGVVHGKVLFFVNSTEAAYRLKLFFEQFLIKSVVLNAELPHNSRLHIIE 314
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12163.1683.1 vs. uniprot
Match: H3GBC9_PHYRM (Uncharacterized protein n=16 Tax=Phytophthora TaxID=4783 RepID=H3GBC9_PHYRM)

HSP 1 Score: 255 bits (651), Expect = 7.600e-78
Identity = 131/203 (64.53%), Postives = 165/203 (81.28%), Query Frame = 1 
Query:    1 QARAHLSELMHYCRDQVSLLALVDDNMAAQEAALRDKADVLVATPARLVAHLKAGNVELKDTVETLVVDEADLVLSFGYSEDIRAVTKRLPKICQGFLMSATLSAELEDLKRVVLHSPAVLKLEEGARDGRLAQFYLSLADKGDKFLVVFAFIKLGLLEGKGLFFVNETESSYRLKLFLEQFHVRSAVLNAELPLNSRLHILQ 609
            Q R H++ELM+YC+D VSLLAL   +M+AQ+A LRD  DVLVATP RLVAHL+AGN+ LK++V+T+V+DEADLVLSFGY EDIR +   LPK CQ F MSATLS ELE LKR VLH+PAV+KLEEGA DG+L QFYL +    DK L+++A ++LG++ GK +FFVN TE++YRLKLF EQF ++SAVLNA+LP NSR HI++
Sbjct:  107 QTRRHMTELMYYCQDTVSLLALGGQSMSAQQALLRDAPDVLVATPGRLVAHLEAGNLTLKESVQTVVIDEADLVLSFGYGEDIRTIFNALPKACQTFCMSATLSPELEKLKRSVLHNPAVVKLEEGATDGKLQQFYLPVKP-ADKDLLLYALLRLGVVSGKVIFFVNSTEAAYRLKLFFEQFVIKSAVLNAKLPHNSRQHIIE 308
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12163.1683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNE7_ECTSI2.570e-12699.51DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KX88_9PHAE9.770e-12598.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZDE1_9STRA3.950e-9475.00DEAD box helicase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A4D9D1T0_9STRA2.040e-8167.50Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A5D6XSV1_9STRA5.950e-7965.02Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A662YEI0_9STRA2.680e-7865.52Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
K3WG30_GLOUD2.950e-7864.04Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
W7TVX7_9STRA3.100e-7868.00Putative atp-dependent rna helicase ddx56 n=1 Tax=... [more]
A0A2D4BSN8_PYTIN7.020e-7865.02Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
H3GBC9_PHYRM7.600e-7864.53Uncharacterized protein n=16 Tax=Phytophthora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12163contigE-fasciculatus_F_contig12163:293..4008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score366.7
Seed ortholog evalue6.7e-99
Seed eggNOG ortholog2880.D7FNE7
Preferred nameDDX56
KEGG koko:K14810
GOsGO:0000463,GO:0000470,GO:0003674,GO:0003676,GO:0003678,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007399,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0010720,GO:0010975,GO:0010976,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022008,GO:0022613,GO:0030154,GO:0031344,GO:0031346,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033677,GO:0033680,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046483,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051276,GO:0051960,GO:0051962,GO:0060284,GO:0065007,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0120035,GO:0140097,GO:0140098,GO:1901360,GO:1901363,GO:2000026
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0346@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-22_001460.1
Exons4
Model size609
Cds size582
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12163.1683.1prot_E-fasciculatus_F_contig12163.1683.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12163 320..4008 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927726.1120455-UTR-E-fasciculatus_F_contig12163:292..3191622927726.1120455-UTR-E-fasciculatus_F_contig12163:292..319Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12163 293..319 +
1695995667.531721-UTR-E-fasciculatus_F_contig12163:292..3191695995667.531721-UTR-E-fasciculatus_F_contig12163:292..319Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12163 293..319 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927726.1268895-CDS-E-fasciculatus_F_contig12163:319..4781622927726.1268895-CDS-E-fasciculatus_F_contig12163:319..478Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12163 320..478 +
1695995667.5468335-CDS-E-fasciculatus_F_contig12163:319..4781695995667.5468335-CDS-E-fasciculatus_F_contig12163:319..478Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12163 320..478 +
1622927726.1384246-CDS-E-fasciculatus_F_contig12163:1356..15201622927726.1384246-CDS-E-fasciculatus_F_contig12163:1356..1520Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12163 1357..1520 +
1695995667.5552993-CDS-E-fasciculatus_F_contig12163:1356..15201695995667.5552993-CDS-E-fasciculatus_F_contig12163:1356..1520Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12163 1357..1520 +
1622927726.1510022-CDS-E-fasciculatus_F_contig12163:2717..28441622927726.1510022-CDS-E-fasciculatus_F_contig12163:2717..2844Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12163 2718..2844 +
1695995667.563617-CDS-E-fasciculatus_F_contig12163:2717..28441695995667.563617-CDS-E-fasciculatus_F_contig12163:2717..2844Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12163 2718..2844 +
1622927726.1612864-CDS-E-fasciculatus_F_contig12163:3876..40081622927726.1612864-CDS-E-fasciculatus_F_contig12163:3876..4008Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12163 3877..4008 +
1695995667.572025-CDS-E-fasciculatus_F_contig12163:3876..40081695995667.572025-CDS-E-fasciculatus_F_contig12163:3876..4008Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12163 3877..4008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12163.1683.1

>prot_E-fasciculatus_F_contig12163.1683.1 ID=prot_E-fasciculatus_F_contig12163.1683.1|Name=mRNA_E-fasciculatus_F_contig12163.1683.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=194bp
MHYCRDQVSLLALVDDNMAAQEAALRDKADVLVATPARLVAHLKAGNVEL
KDTVETLVVDEADLVLSFGYSEDIRAVTKRLPKICQGFLMSATLSAELED
LKRVVLHSPAVLKLEEGARDGRLAQFYLSLADKGDKFLVVFAFIKLGLLE
GKGLFFVNETESSYRLKLFLEQFHVRSAVLNAELPLNSRLHILQ
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mRNA from alignment at E-fasciculatus_F_contig12163:293..4008+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12163.1683.1 ID=mRNA_E-fasciculatus_F_contig12163.1683.1|Name=mRNA_E-fasciculatus_F_contig12163.1683.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3716bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12163:293..4008+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGCTCGTGCCCACCTCTCCGAGCTGATGCACTACTGTCGGGATCAAGT
GTCTTTGTTGGCGCTGGTGGACGACAACATGGCGGCGCAGGAGGCCGCTC
TGAGAGACAAGGCGGACGTGTTGGTGGCCACCCCCGCCAGGCTCGTGGCG
CATCTTAAGGCGGGAAACGTGGAGCTTAAGGACACGGTGCGCTACAGCAG
GAATGGAGCCTCCACACGGCCTCTTTTTTGGCACCCCTACCACACACTCA
TTTTTTTTTTTGGCACCACTATTGTACCACTTTGAGAGCCAATTTTGGCA
CTCCTACTACACAATCAGTTTTTTTGTTTCGGCCCCACCACACAATCGGT
TATTTCTTTGGCAGCCACACACACTCACTTGTGTTTTTTGGCATCCTCAG
AGCCTATTTTGGCACCCCTACCACACACTCAGTTGTTTTTTTCCCACTCA
GTGCTGTGAAGACTTTAAGACTTGAACACATCTCCCTCGACTACTGCTGT
GGTTATGTCCCAAATGGGTGCATGTCTTTCTGTGATTCTGTGATGGTATG
AAACCCGTCTCTGATTCTTTTAACTGTTTTGCGGACCCTTCGGGTCCATT
TCAATTAAGAATACCTTTATAGGGTAAGTTAGCTTGGGACCGCGGTTATG
TACCGCGTCAAGTGTTTGAGCCGAATGGACAGTGCCGGGGCGGCGAGATT
GGACCGGTGTTTAGTGTGAAGACAACAGACCCAACATGTGTATGTTCTAC
AAAGAATAACACCTGAAGTAGCCGTTACGTAAGACATACGAAATGTGTAT
TTATAAAAAAAACAACCATCAGGTGGAAACTGAAGACAACAAATAAACGT
GGGTACATTCTAAAATATATAACGCCTGGGGTAGCCGTCAGGTGGAAGCT
GAAGAGCAACAACATGTGTATTTCTAACAAAAAATGGCCATCAGGTGGAA
ACTGAAGTATTCTCTAAAAATATCAATGCCTGAAGTAACCATCAGGTGGA
AACCGAAGACAACAACAACATGTGTTTATTCTAAAAGATGTAACGCCCTG
AAAATGTCCATCAGGTGGAAACCTTAGTAGTGGACGAGGCTGACCTGGTG
CTGTCCTTCGGTTACTCGGAAGACATCCGCGCGGTCACGAAACGCCTCCC
CAAGATCTGCCAGGGCTTCCTCATGTCGGCGACGCTGAGCGCGGAGCTGG
AAGACCTGAAGCGGGTGGTTCTGCACAGGTGTGGGAGGGAGGGTGGGGGT
GAAAGCAAGCCGTAGTCGTTAGCCCATTGACCTTGCATCCCTGCATTGCC
GGGACGGAGTGATTTCACCGCCCCGGGATAGGGTTGGGGCGTGTACTGAT
GTAAACGCGTGCCGTACTCGTTAAACCATTGACCTTGCATCCCTGCAATG
TCGGGACGGAGCGATGTGCCGGGTTTTCGCCGCCCCAGGGTATGGTGTGT
TTGTGTACTGACGTAAACGCATGCCGTAGTCGTTAAACCATTGACCTTGC
AATGTCGGGACGGAGCGATATGCCGGGTTTTCGCCGGCGGCCCAGACTGC
ATTACACAAGGGTGAACCAGGAGGTGCCGGGGGTGGTAGGGTATGAGGAG
ACCAAGATTTTGTGCTGTTTTGTTTTCTTTTTTCTTAATATGACACAACG
GATCCATCTCTATCCCTAGAAAAGAGTCTAAAGACAGATTAGCAATGAAT
TCATAGCGTTTTTGTTTTCTTTCCGTGCATACAATGGTGATAGTCTTTCT
GTGTTTGTAATTATTTTTCCTTATACAATCGTGAAGTTCTACGTGGCGGG
TTCTGGCTTCCGCACAGGATTTAACGTCGCTGTCGCTGTTGGTGGTGGGC
TACGCCAAGGTGGTAGCAAATACATGTGCGCGGTATGATTGGTTGGTTGA
AAGGGAGAATTGTTCGTGTCTATCGAGGTTGTTTTTGCCTTGCTTGTTTG
TGTCTTGAGGTTGTTAGTTTGACCTTGCCCCCAAGCTTCGCGTATCGAGG
AAATCTGTCTATGCGTCGCGCTTTTGTATTCGCGGTCCTCCGCACCTCGC
TCTTGTCGAAAGAGACAGACACCGCTGGTATCCTCCGATTCAAGCAAGCC
TCCCCCCCCTGTCGCAATACAAGGCCACCACCACTGTCTCGAAGATATGG
ATCCACGATCAAAAGACCGGCGGGGTTAACACGCCCTCCCTTCCTGTTGC
TTCCGATCATGAAACGCACGGGGTTGGTGTTGACCATCCCCCGCCCTTTT
CCTTCCCTTCCGGCCGAAAAACAGCACGGCGGTGTAGACAAACCCCCAAT
TGCTTCCGATGCACGGACGGCGTTTTTTTTTTTTTTTTTAAATCCCCACT
GCCCTTTCGCTTGCGGCCAAAACAACAGCGATGTTGACATCCCCCCCCGC
CCTCGTGCTTACGATCGAACAACAGCCCGGCGGTGTTGAAGCTGGAGGAG
GGGGCTAGGGACGGGCGGCTGGCCCAGTTCTACCTGAGTCTCGCCGACAA
GGGCGACAAGTTTCTTGTGGTCTTTGCCTTCATCAAGCTCGGTCTGCTAG
AGGTGAACCGACTTATTTTCTCCTTTGTTTGTTTCTGGCCTTTTCGCTCC
GACAACAAGGTGGACGACAACAAAAAAACACAACAATAAAAAAAATATGA
GCATGTACAGTTGTGTACACTTGCACGACGCCCGTGCGCCTCCCGTGTTT
GCGGTCGGTCGGGGGTTGGTGGTTTGTCGTTTCTTCTTTGTTCTTTGTAT
TGGGACGGGTTTCGAACCCTGGCTTGCTGTGAACATGGACCTCCTGGCCC
AAGACCTGCTCACGCCGTGCAACACTGGGTCGGGACAAACGAAGACGTTC
GTGAATGGACTCGGGTTACCATCGCGGAATTCCATCCGCAGTCGTGACAT
GGACCAGATGATTGACAAACAAGCTCGTTTGAATACAAAATCACAACGAT
AACGACAACGACGAATTCCAAGTTCACCGTACCCGAGGCCAGGATCGGAG
CGTTTTTGCTAGTGGTGACGAACTACGCCTATATTGTGATCTTCTTTGTT
GTGGAAGGGTCACGAGCCTTGACTCGGCTCGCGGACACCGTCCTTCACGT
CTGAGTATGGTACCGTAAGAGTCGGAGATATGGCACTCCCGTGTTGAGTG
TTTTTTTTCTAGAGTATTTCTCCACAACCAGGAAGGTATCGCTGCCGAAA
AGGGTACAATAGTTTTGGAAACATTAACATGTCGTCGAGGGCTTTCCTGA
GAGGTATCGGTTGGTGTTCGCACCCGCCTAGTTGTGGAGAAATACGCTGT
AGAAAAACGCTAACATGGGGGTGCCATCTCTCAAGCTCTTACGATAAGCC
TGTTTCTACCCCTATTACCAGGAAGAGGTTGGGAGTTTCGCAACAGAAGT
GGCTGCTGGAGCAGCGTCGAGCAGCCAGCCTGGTTCTCTCGCGAAATATG
CTTGACTAAAGTTGTAGATAGATGTGCTAGGGCACATACACATGCGGATG
GACGCCCTACCGCTGCTGCTGCTACGAACGACCGCACCCGTGACTCATTT
TTTTGCGCGTTTTTTCTGTTGACCACAACAACAGGGGAAAGGGTTATTCT
TCGTCAATGAAACCGAGTCCTCGTACCGCCTCAAGCTGTTCTTGGAGCAG
TTTCACGTCAGGTCTGCCGTCCTCAACGCGGAGCTGCCGCTCAACTCGAG
GCTGCACATCCTGCAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12163:293..4008+

>mRNA_E-fasciculatus_F_contig12163.1683.1 ID=mRNA_E-fasciculatus_F_contig12163.1683.1|Name=mRNA_E-fasciculatus_F_contig12163.1683.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1164bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12163:293..4008+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCACTACTGTCGGGATCAAGTGTCTTTGTTGGCGCTGGTGGACGACAA
CATGGCGGCGCAGGAGGCCGCTCTGAGAGACAAGGCGGACGTGTTGGTGG
CCACCCCCGCCAGGCTCGTGGCGCATCTTAAGGCGGGAAACGTGGAGCTT
AAGGACACGATGCACTACTGTCGGGATCAAGTGTCTTTGTTGGCGCTGGT
GGACGACAACATGGCGGCGCAGGAGGCCGCTCTGAGAGACAAGGCGGACG
TGTTGGTGGCCACCCCCGCCAGGCTCGTGGCGCATCTTAAGGCGGGAAAC
GTGGAGCTTAAGGACACGGTGGAAACCTTAGTAGTGGACGAGGCTGACCT
GGTGCTGTCCTTCGGTTACTCGGAAGACATCCGCGCGGTCACGAAACGCC
TCCCCAAGATCTGCCAGGGCTTCCTCATGTCGGCGACGCTGAGCGCGGAG
CTGGAAGACCTGAAGCGGGTGGTTCTGCACAGGTGGAAACCTTAGTAGTG
GACGAGGCTGACCTGGTGCTGTCCTTCGGTTACTCGGAAGACATCCGCGC
GGTCACGAAACGCCTCCCCAAGATCTGCCAGGGCTTCCTCATGTCGGCGA
CGCTGAGCGCGGAGCTGGAAGACCTGAAGCGGGTGGTTCTGCACAGCCCG
GCGGTGTTGAAGCTGGAGGAGGGGGCTAGGGACGGGCGGCTGGCCCAGTT
CTACCTGAGTCTCGCCGACAAGGGCGACAAGTTTCTTGTGGTCTTTGCCT
TCATCAAGCTCGGTCTGCTAGAGCCCGGCGGTGTTGAAGCTGGAGGAGGG
GGCTAGGGACGGGCGGCTGGCCCAGTTCTACCTGAGTCTCGCCGACAAGG
GCGACAAGTTTCTTGTGGTCTTTGCCTTCATCAAGCTCGGTCTGCTAGAG
GGGAAAGGGTTATTCTTCGTCAATGAAACCGAGTCCTCGTACCGCCTCAA
GCTGTTCTTGGAGCAGTTTCACGTCAGGTCTGCCGTCCTCAACGCGGAGC
TGCCGCTCAACTCGAGGCTGCACATCCTGCAGGGGAAAGGGTTATTCTTC
GTCAATGAAACCGAGTCCTCGTACCGCCTCAAGCTGTTCTTGGAGCAGTT
TCACGTCAGGTCTGCCGTCCTCAACGCGGAGCTGCCGCTCAACTCGAGGC
TGCACATCCTGCAG
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