mRNA_E-fasciculatus_F_contig12156.1676.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12156.1676.1
Unique NamemRNA_E-fasciculatus_F_contig12156.1676.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12156.1676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12156contigE-fasciculatus_F_contig12156:1538..2328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size387
Cds size369
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12156.1676.1prot_E-fasciculatus_F_contig12156.1676.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12156 1555..2328 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927725.194042-UTR-E-fasciculatus_F_contig12156:1537..15541622927725.194042-UTR-E-fasciculatus_F_contig12156:1537..1554Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12156 1538..1554 +
1695995667.0332901-UTR-E-fasciculatus_F_contig12156:1537..15541695995667.0332901-UTR-E-fasciculatus_F_contig12156:1537..1554Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12156 1538..1554 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927725.205858-CDS-E-fasciculatus_F_contig12156:1554..16181622927725.205858-CDS-E-fasciculatus_F_contig12156:1554..1618Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12156 1555..1618 +
1695995667.046105-CDS-E-fasciculatus_F_contig12156:1554..16181695995667.046105-CDS-E-fasciculatus_F_contig12156:1554..1618Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12156 1555..1618 +
1622927725.219041-CDS-E-fasciculatus_F_contig12156:2023..23281622927725.219041-CDS-E-fasciculatus_F_contig12156:2023..2328Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12156 2024..2328 +
1695995667.0597606-CDS-E-fasciculatus_F_contig12156:2023..23281695995667.0597606-CDS-E-fasciculatus_F_contig12156:2023..2328Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12156 2024..2328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12156.1676.1

>prot_E-fasciculatus_F_contig12156.1676.1 ID=prot_E-fasciculatus_F_contig12156.1676.1|Name=mRNA_E-fasciculatus_F_contig12156.1676.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=123bp
MSLTSSRGRTQRGTSATTTHNELDTERGTAETRQPPHDILRWIYRRRRWA
ACVSLGLLLEVATTLWTLKQAISLGVFQKADCGVSAVASYLNDVLPRHCE
NVEFSEVFWNDTLYEYRTLPDYA
back to top

mRNA from alignment at E-fasciculatus_F_contig12156:1538..2328+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12156.1676.1 ID=mRNA_E-fasciculatus_F_contig12156.1676.1|Name=mRNA_E-fasciculatus_F_contig12156.1676.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=791bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12156:1538..2328+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGATTCCAAACCGGCAAATGAGCCTGACTTCGTCGAGGGGCCGTACTCAG
CGAGGCACTTCAGCTACAACCACGCACAATGGTGCGTTTCAACGCAGAGA
TCTGCATATGTAGCTAACGCATTCATGCCTCAGTGTATCTCAAAAACCAC
CATTTCCAAGTTGAAGGCTCAACTCCCAGAGGTCCTCCTTACATTACCGA
CTGAGCGATATCGGATTCAAAAACCGATTCATCCCATGGTTGCGTCCGGA
CTTTGCTCTGAGGTACGCTCCTCTCATAGAGTAATATCAAACAATATAAG
GGGATCGAAATAGTGACACTGCTGTAGAAGGCGATGGCACTCTCGACCGC
ATGTGTAGGTTTGTTTCTGGTGCGCTTTGCTGCACCCGGTTACCGTGCCG
ATTCTACGAAGTACCCGGCTGCGTTTTTTTTTCGCATCCACGCCATCTCT
ATTTCGGCCTTCTGTCATCTATGCAAACGAAAACAGAACTGGACACAGAA
CGTGGTACGGCCGAGACAAGACAACCCCCCCACGATATTCTGCGGTGGAT
ATATCGGCGCCGTCGCTGGGCGGCATGCGTTTCGTTGGGTCTACTCTTGG
AAGTAGCGACGACACTCTGGACGTTGAAGCAGGCCATCTCACTGGGGGTC
TTCCAGAAAGCAGACTGCGGGGTGTCTGCGGTTGCCTCGTACTTGAATGA
TGTATTACCGCGGCATTGCGAAAATGTCGAGTTTTCGGAGGTATTCTGGA
ACGACACTCTGTATGAGTACCGTACCTTGCCTGATTACGCT
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12156:1538..2328+

>mRNA_E-fasciculatus_F_contig12156.1676.1 ID=mRNA_E-fasciculatus_F_contig12156.1676.1|Name=mRNA_E-fasciculatus_F_contig12156.1676.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=738bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12156:1538..2328+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGCCTGACTTCGTCGAGGGGCCGTACTCAGCGAGGCACTTCAGCTAC
AACCACGCACAATGATGAGCCTGACTTCGTCGAGGGGCCGTACTCAGCGA
GGCACTTCAGCTACAACCACGCACAATGAACTGGACACAGAACGTGGTAC
GGCCGAGACAAGACAACCCCCCCACGATATTCTGCGGTGGATATATCGGC
GCCGTCGCTGGGCGGCATGCGTTTCGTTGGGTCTACTCTTGGAAGTAGCG
ACGACACTCTGGACGTTGAAGCAGGCCATCTCACTGGGGGTCTTCCAGAA
AGCAGACTGCGGGGTGTCTGCGGTTGCCTCGTACTTGAATGATGTATTAC
CGCGGCATTGCGAAAATGTCGAGTTTTCGGAGGTATTCTGGAACGACACT
CTGTATGAGTACCGTACCTTGCCTGATTACGCTAACTGGACACAGAACGT
GGTACGGCCGAGACAAGACAACCCCCCCACGATATTCTGCGGTGGATATA
TCGGCGCCGTCGCTGGGCGGCATGCGTTTCGTTGGGTCTACTCTTGGAAG
TAGCGACGACACTCTGGACGTTGAAGCAGGCCATCTCACTGGGGGTCTTC
CAGAAAGCAGACTGCGGGGTGTCTGCGGTTGCCTCGTACTTGAATGATGT
ATTACCGCGGCATTGCGAAAATGTCGAGTTTTCGGAGGTATTCTGGAACG
ACACTCTGTATGAGTACCGTACCTTGCCTGATTACGCT
back to top