mRNA_E-fasciculatus_F_contig12154.1675.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12154.1675.1 vs. uniprot
Match: D7FIR4_ECTSI (Nucleolar GTP-binding protein 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIR4_ECTSI) HSP 1 Score: 240 bits (613), Expect = 5.920e-73 Identity = 159/167 (95.21%), Postives = 161/167 (96.41%), Query Frame = 1
Query: 1 VGGLVSRLTVAMPKARDGRDRAPTIPASVVAKRAXXXXXXXXXAGSAMDVDGGEGVRSQPATRKTEKDLMWENGGPGVYSCDYRKYYDLKDDAWKMDRIPEIMDGKNVADYVDQDIDAKLALLEQXXXXXXXXXXXXXXXXXXXXXXXRALAQAIRDRAKVIKKEVR 501
VGGLVSRLTVAMPKARDGRDRAPTIPASVVAKRA XXXXXXXX GS+MDVDGGEG RSQP RKTEKDLMWENGGPGVYSCDYRKYYDLKDDAWKMDRIPEIMDGKNVADYVDQDIDAKLALLEQXXXXXXXXXXXXXXXXXXXXXXXRALAQAIRDR+KVIKKE R
Sbjct: 354 VGGLVSRLTVAMPKARDGRDRAPTIPASVVAKRAAXXXXXXXXXGSSMDVDGGEGGRSQPTARKTEKDLMWENGGPGVYSCDYRKYYDLKDDAWKMDRIPEIMDGKNVADYVDQDIDAKLALLEQXXXXXXXXXXXXXXXXXXXXXXXRALAQAIRDRSKVIKKESR 520
BLAST of mRNA_E-fasciculatus_F_contig12154.1675.1 vs. uniprot
Match: A0A836CDN0_9STRA (Nucleolar GTP-binding protein 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDN0_9STRA) HSP 1 Score: 132 bits (333), Expect = 6.550e-33 Identity = 71/125 (56.80%), Postives = 82/125 (65.60%), Query Frame = 1
Query: 1 VGGLVSRLTVAMPKARDGRDRAPTIPASVVAKRAXXXXXXXXXAGSAMDVDGGEGVRSQPATRKTEKDLMWENGGPGVYSCDYRKYYDLKDDAWKMDRIPEIMDGKNVADYVDQDIDAKLALLEQ 375
VG +++RLTVAMP RD R R +IP SV+A RA A M R TEK+ MW NGGPGVY+CDYRKYYDL D WK D+IPEIMDGKNVADYVD +IDA+LALLE+
Sbjct: 354 VGEVMNRLTVAMPTPRDARARGASIPDSVLAARAAAKNGAGSNA--QMSXXXXXXXXXXXXARLTEKERMWLNGGPGVYNCDYRKYYDLASDDWKFDKIPEIMDGKNVADYVDAEIDARLALLER 476
BLAST of mRNA_E-fasciculatus_F_contig12154.1675.1 vs. uniprot
Match: A0A6V1RDW6_HETAK (Nucleolar GTP-binding protein 1 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RDW6_HETAK) HSP 1 Score: 122 bits (307), Expect = 2.180e-29 Identity = 72/165 (43.64%), Postives = 94/165 (56.97%), Query Frame = 1
Query: 1 VGGLVSRLTVAMPKARDGRDRAPTIPASVVAKRAXXXXXXXXXAGSAMDVDGGEGVRSQPATRKTEKDLMWENGGPGVYSCDYRKYYDLKDDAWKMDRIPEIMDGKNVADYVDQDIDAKLALLEQXXXXXXXXXXXXXXXXXXXXXXXRALAQAIRDRAKVIKKE 495
V +++RLTVA P+ RD R RA IP SV+A + + MD D +PA RKTEKDL ENGG GVYSCD+RKYYDLK + W+ D P+I+DGKNVADYVD DI AKL LE+ + L +A+RD+ K+ +++
Sbjct: 354 VTDVMNRLTVAQPRPRDARARAAFIPESVLAAK------------NRMDTD-------KPAKRKTEKDLQLENGGAGVYSCDFRKYYDLKSEEWRWDVQPQILDGKNVADYVDPDIAAKLEQLEREEEQLAAEYLNEEDMGSDLDEEEKVLHKAVRDKKKITQQQ 499
BLAST of mRNA_E-fasciculatus_F_contig12154.1675.1 vs. uniprot
Match: A0A7S3MAG3_9STRA (Nucleolar GTP-binding protein 1 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MAG3_9STRA) HSP 1 Score: 120 bits (301), Expect = 1.510e-28 Identity = 64/122 (52.46%), Postives = 76/122 (62.30%), Query Frame = 1
Query: 10 LVSRLTVAMPKARDGRDRAPTIPASVVAKRAXXXXXXXXXAGSAMDVDGGEGVRSQPATRKTEKDLMWENGGPGVYSCDYRKYYDLKDDAWKMDRIPEIMDGKNVADYVDQDIDAKLALLEQ 375
++SR+TVAMPK RD R P+IP SV K SAM V G + R TEK LMW NGGPGVY CDYRKYY L +D W+ D IPE MDGKNV D+ D+DI+A+L LE+
Sbjct: 377 VLSRITVAMPKPRDSATRGPSIPESVANKA------------SAMAVTGA-------SERLTEKQLMWNNGGPGVYVCDYRKYYQLAEDEWRFDTIPEFMDGKNVTDFFDEDIEARLNALEE 479
BLAST of mRNA_E-fasciculatus_F_contig12154.1675.1 vs. uniprot
Match: A0A7S1UHB4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHB4_9STRA) HSP 1 Score: 120 bits (300), Expect = 1.680e-28 Identity = 71/168 (42.26%), Postives = 94/168 (55.95%), Query Frame = 1
Query: 1 VGGLVSRLTVAMPKARDGRDRAPTIPASVVAKRAXXXXXXXXXAGSAMDVDGGEGVRSQPATRKTEKDLMWENGGPGVYSCDYRKYYD-LKDDAWKMDRIPEIMDGKNVADYVDQDIDAKLALLEQXXXXXXXXXXXXXXXXXXXXXXXRALAQAIRDRAKVIKKEVR 501
V G+++RLTVA P RD + R IPASV+AKR DG + + R+TEKD MWENGGPGVY DYR+++ L+DD W+ D +PEIMDGKNVAD++D DI+A+LA LE + +AIRDRA ++K+ R
Sbjct: 363 VDGVLNRLTVAKPAPRDNQTRGAVIPASVLAKR-----------------DGMDTAAADAGERRTEKDRMWENGGPGVYKPDYREHWQGLRDDQWRHDAVPEIMDGKNVADFMDPDIEARLAALEAEEVQLLEEDALNPPDESTLDEETLGIHKAIRDRAGLLKQRRR 513
BLAST of mRNA_E-fasciculatus_F_contig12154.1675.1 vs. uniprot
Match: A0A7S2W610_9STRA (Nucleolar GTP-binding protein 1 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W610_9STRA) HSP 1 Score: 118 bits (295), Expect = 9.530e-28 Identity = 63/125 (50.40%), Postives = 81/125 (64.80%), Query Frame = 1
Query: 1 VGGLVSRLTVAMPKARDGRDRAPTIPASVVAKRAXXXXXXXXXAGSAMDVDGGEGVRSQPATRKTEKDLMWENGGPGVYSCDYRKYYDLKDDAWKMDRIPEIMDGKNVADYVDQDIDAKLALLEQ 375
+ G+++RLTVAMP +RD ++R TIP SV+ R A + +G + +KTEKDLMWENGGPGVYSCDYRKYY L+ + D IPEI+DGKN+AD+VD DI KL LE+
Sbjct: 354 LNGILNRLTVAMPVSRDEKERPVTIPESVLRARE---------AKANKTEEGDVEMDDAEPKKKTEKDLMWENGGPGVYSCDYRKYYKLRKPEYNFDSIPEIIDGKNIADFVDPDIMQKLEELEK 469
BLAST of mRNA_E-fasciculatus_F_contig12154.1675.1 vs. uniprot
Match: A0A482RSB8_9ARCH (NOG1 family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RSB8_9ARCH) HSP 1 Score: 115 bits (288), Expect = 7.890e-27 Identity = 62/121 (51.24%), Postives = 73/121 (60.33%), Query Frame = 1
Query: 10 LVSRLTVAMPKARDGRDRAPTIPASVVAKRAXXXXXXXXXAGSAMDVDGGEGVRSQPATRKTEKDLMWENGGPGVYSCDYRKYYDLKDDAWKMDRIPEIMDGKNVADYVDQDIDAKLALLE 372
++SR++VA PK RD + RAPTIP S+ MD S A + TEK LMW GGPGVYSCDYRKYY L++D WK D +PEIMDGKNV DY D DI+ KL LE
Sbjct: 343 ILSRISVAQPKPRDNKVRAPTIPDSL-----------------QMDT-------SMAADKSTEKTLMWAQGGPGVYSCDYRKYYTLENDEWKFDTLPEIMDGKNVLDYYDSDIEEKLNQLE 439
BLAST of mRNA_E-fasciculatus_F_contig12154.1675.1 vs. uniprot
Match: A0A2P6V568_9CHLO (Nucleolar GTP-binding protein 1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V568_9CHLO) HSP 1 Score: 111 bits (278), Expect = 1.940e-25 Identity = 65/125 (52.00%), Postives = 75/125 (60.00%), Query Frame = 1
Query: 1 VGGLVSRLTVAMPKARDGRDRAPTIPASVVAKRAXXXXXXXXXAGSAMDVDGGEGVRSQPATRKTEKDLMWENGGPGVYSCDYRKYYDLKDDAWKMDRIPEIMDGKNVADYVDQDIDAKLALLEQ 375
VG +VSR+ VAMPKARD R P IP V A RA D GE R+TEKDL E GG GVY+ D RK YDLKD AWK D +PEI+DGKN+ D+VD DIDA+L LE+
Sbjct: 367 VGDIVSRIHVAMPKARDSMARPPVIPPGVAAARARR--------------DAGE-------KRRTEKDLQEEQGGAGVYNGDLRKLYDLKDPAWKYDIMPEIIDGKNILDFVDPDIDARLEALER 470
BLAST of mRNA_E-fasciculatus_F_contig12154.1675.1 vs. uniprot
Match: A0A448YYN1_9STRA (Nucleolar GTP-binding protein 1 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYN1_9STRA) HSP 1 Score: 110 bits (276), Expect = 3.580e-25 Identity = 70/176 (39.77%), Postives = 91/176 (51.70%), Query Frame = 1
Query: 1 VGGLVSRLTVAMPKARDGRDRAPTIPASVVAKRAXXXXXXXXX---------AGSAMDVDGGEGVRSQPATRKTEKDLMWENGGPGVYSCDYRKYYDLKDDAWKMDRIPEIMDGKNVADYVDQDIDAKLALLE---QXXXXXXXXXXXXXXXXXXXXXXXRALAQAIRDRAKVIKK 492
+ G+++RL V P RD +R IP +V A A + D DGG+ + RKT +DLMWENGGPGV++ DYR+ Y+LK+D WK D IPEI+DGKN+ADYVD DI+ KLA LE + A AIRDR K+I+K
Sbjct: 307 IEGVMNRLQVFHPTPRDNVERGAHIPDTVKDAIAEGRIGSVDHKPKRSRSGYAQTKGDTDGGDDDEMNGSYRKTARDLMWENGGPGVWAPDYREQYELKEDEWKFDAIPEIIDGKNIADYVDPDIEKKLADLEMEEEQLLKQLEAERMGEEPESDLDSEEEAAVDAIRDRKKIIRK 482
BLAST of mRNA_E-fasciculatus_F_contig12154.1675.1 vs. uniprot
Match: A0A7S4MXB5_9STRA (Nucleolar GTP-binding protein 1 n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MXB5_9STRA) HSP 1 Score: 107 bits (268), Expect = 4.340e-24 Identity = 63/136 (46.32%), Postives = 76/136 (55.88%), Query Frame = 1
Query: 1 VGGLVSRLTVAMPKARDGRDRAPTIPASVVAKRAXXXXXXXXXAGSAMDV-----------DGGEGVRSQPATRKTEKDLMWENGGPGVYSCDYRKYYDLKDDAWKMDRIPEIMDGKNVADYVDQDIDAKLALLEQ 375
V G+++RL V P ARD R IP SVV R + V DG + +KT ++LMWENGGPGV+S D+R+ YDL D WK D IPEI+DGKNVADYVD DIDAKL LE+
Sbjct: 308 VEGVMNRLQVFHPTARDSVARDVCIPESVVKARDEGRLGEQKKSRVGYSVTKEDMENGDAPDGEDAAMDDATKKKTARELMWENGGPGVWSPDFREQYDLLDAEWKFDAIPEILDGKNVADYVDPDIDAKLDKLER 443 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12154.1675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12154.1675.1 >prot_E-fasciculatus_F_contig12154.1675.1 ID=prot_E-fasciculatus_F_contig12154.1675.1|Name=mRNA_E-fasciculatus_F_contig12154.1675.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=167bp VGGLVSRLTVAMPKARDGRDRAPTIPASVVAKRAAAAAAAAGGAGSAMDVback to top mRNA from alignment at E-fasciculatus_F_contig12154:1969..3543+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12154.1675.1 ID=mRNA_E-fasciculatus_F_contig12154.1675.1|Name=mRNA_E-fasciculatus_F_contig12154.1675.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1575bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12154:1969..3543+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12154:1969..3543+ >mRNA_E-fasciculatus_F_contig12154.1675.1 ID=mRNA_E-fasciculatus_F_contig12154.1675.1|Name=mRNA_E-fasciculatus_F_contig12154.1675.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1002bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12154:1969..3543+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |