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Homology
BLAST of mRNA_E-fasciculatus_F_contig12153.1673.1 vs. uniprot
Match: A0A6H5K231_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K231_9PHAE) HSP 1 Score: 104 bits (259), Expect = 3.970e-20 Identity = 278/406 (68.47%), Postives = 281/406 (69.21%), Query Frame = 1
Query: 1 YARSPAGFGAGDPPTTRSSGVATAERFLSPNSGSWGQEGGGDDGQESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTSNPAKANKRRKGTPFPASITEGDQEDLSDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-PATGKTKWGSGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKQHADQLXXXXXXXXXXXXXXXLQLQQHLHMXLQXXXXQQHPAAGGVPIMGVLGHGHTQQHLHQXXXXXXXXXXXXXXXXXXPLAAAGNAAFGFDQDGGPVPRAQTLNSLPS--MTGSLSVQ 1209
Y RSPAGFGAG+PPTTRSSGVAT ERFL+PNSGSWGQEG G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTSNP KANKRRKG PASI+EGDQEDLSDGXXXXXXXXXXXXXX XXXX PATGK KWGSGK XXXXXXXXXXXXXXXX XXXXXXXXX XXXXXXXXXXXXXXX X XX PAA IMG LGH XXXXXXXXXXXXXXX PL AAGNAAFGFDQDGGPVPRAQTLNSLPS MTGSLSVQ
Sbjct: 73 YTRSPAGFGAGEPPTTRSSGVATVERFLAPNSGSWGQEGEG-----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTSNPTKANKRRKGALLPASISEGDQEDLSDGXXXXXXXXXXXXXXAGREXXXXSVDTASAIANGAAGSETSSPATGKAKWGSGKRSXXXXXXXXXXXXXXXXTTVGTNGRARKRKVSARKGKQSRAEEGELPPGAVQRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----PAA----IMGALGH-----------XXXXXXXXXXXXXXXPPLPAAGNAAFGFDQDGGPVPRAQTLNSLPSNSMTGSLSVQ 447
BLAST of mRNA_E-fasciculatus_F_contig12153.1673.1 vs. uniprot
Match: D8LTT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT9_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 1.090e-15 Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 1
Query: 1 YARSPAGFGAGDPPTTRSSGVATAERFLSPNSGSWGQEGGGDDGQES 141
YARSPAGFGAG+PPTTRSSGVATA+RFLSPNSGSWGQEG GDDGQES
Sbjct: 240 YARSPAGFGAGEPPTTRSSGVATAQRFLSPNSGSWGQEGEGDDGQES 286
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 90.1 |
| Seed ortholog evalue | 2.9e-15 |
| Seed eggNOG ortholog | 2880.D8LTT9 |
| EggNOG OGs | 28HE3@1,2QPS9@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 1374 |
| Cds size | 1374 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12153.1673.1 >prot_E-fasciculatus_F_contig12153.1673.1 ID=prot_E-fasciculatus_F_contig12153.1673.1|Name=mRNA_E-fasciculatus_F_contig12153.1673.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=458bp
YARSPAGFGAGDPPTTRSSGVATAERFLSPNSGSWGQEGGGDDGQESEEE EEGEGGGGDAKVRANGSSRQQQGFGHAGAAEEGGEEEEEEEEEESPLPAQ SNKRQRNLRVRARPKQRQPQQQQQPHQQERARVRTTSNPAKANKRRKGTP FPASITEGDQEDLSDGGGNASTAAAAGRDNGSGGGGSDDTAASAAANGAA GSETSSPATGKTKWGSGKRSAAVAAAASDDTTAGTNGRARKRKGTTRKGK QSRSEEGGPPPGVAQRQQQQQQQQQQQHRQQQHKQHADQLQQQQQQLSRH RQQQHLQLQQHLHMQLQQQQQQQHPAAGGVPIMGVLGHGHTQQHLHQQQQ QQQQQQQQQQQQQQPPLAAAGNAAFGFDQDGGPVPRAQTLNSLPSMTGSL SVQNLAMLLGMSGGGGGGGGGAGGAAESGGGSGAGSHHLPSHGLTASGEL WCCCCCY* back to topmRNA from alignment at E-fasciculatus_F_contig12153:82..3592+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig12153.1673.1 ID=mRNA_E-fasciculatus_F_contig12153.1673.1|Name=mRNA_E-fasciculatus_F_contig12153.1673.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3511bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12153:82..3592+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) TACGCGAGGTCGCCTGCAGGTTTCGGCGCGGGGGACCCACCAACGACAAG
ATCATCAGGAGTGGCCACGGTGCGTCGTTCGCCCTCCCACGGACAAACAC
TCACCTAGACAGCGCTCGGGTCCCACCCGCACGAAGAAGCGTTTGCGTCG
ATTGGTGCCCATCCGTCCGAACAACACAACATTAGGGGCGACTGCTGAGT
TCTCTTCACGCGTCGCTTGTCGTGCCTGCCCCCTTACCCTGTATGTATTC
ATTAAGCAACGACCCAAGGCACGAAACGGAAAAAACAAAAAGAAAACGCA
CGAAACCTCACCTCCCGCGCGGCCTTCTCTTCCAGTGTGCCGTCGGAGAT
GCCGCCTCCTTGTTTGCGCTTACGCAAAATTGCGCAAGCACAAACAAGGA
GGCGGCATCTCCGACGGCACACTTGAAGGGAAGGCCGCGGGAGGTGAATT
AAGTGCATTTTGGCGTTAAAGTTTCCGTGCGTGGCTGGCTCTCTTTTTGA
CACAATCGTGTGCCCTCTCAGTACATCATTCGCGAAATTCCGGCCGACCT
TGATTGTGGTCAGGTCGTGGCGATCGGGCGGGTGTGTTGTGATTCTCACC
TCACGCCTGGCAAGCATACCCCCCCCCCCGTCTCTCTCCTCCCACTTGGG
AGGCGCCGTCGTCGTCGTTGTGTGTTTGCAGGATTTCTCCCATTGAGGAG
ACTGGTGCCAGACCTCTAGCCTTGTGTTAGTTGGCGTCTTCAGAAGGCAT
TGCGGCCGAACCCGAAACAAAAGTCTTGGACTTGGCCCTCTGAGCGAACC
CCGCGCTCGTCCTGCCCCCCCCCGCCCCCTTTTTTTCTTGTTCCTCGACC
AGGCCGAGAGGTTCCTCTCCCCCAACAGCGGGTCTTGGGGCCAAGAGGGT
GGGGGGGACGACGGACAGGAATCCGAGGAGGAGGAGGAAGGGGAGGGTGG
GGGGGGTGACGCGAAGGTACGGGCGAACGGGAGCAGCAGACAGCAGGTGA
CCGACCCTTTTGTAGGCACCAGCCTCAACAGCCGAAGTGCATGCAAAGCC
TCTCGTCAGCCCCAAGTGTGTTGTCGTCTCCGTCAAGGCTGATTAACACT
CTCGAGCTGGAAGAGGTCCTCGCAACAGCTTGAGGAGCTTGTTGTGGGGA
TCGGGATGTGCTGCTGTGGTTGAAAGGAGTAAGGAGTGTAGCATACGCGA
GAAGACGGCAGCCGCTCTTTCTCACCTTTTCGTATATATCGTGGGACAGG
ACGGGTTGCTTGGTGTCTCGGCGGAAAAATTTGAAAAATTAACATCGACC
GGTGATTGGTTCAATCGACTTTTGTTGCTGTCCAAGGGTCCTCTGAAAGT
AGGAAGCTTGCCCCGTCTACGTCAGCTCTCCTTGAGGGTCTGATCTTCCC
CTTGCACATAATCGACATTGCTGCTGGCCTGCTGACCCTTACGCGCCTCT
TGCTACAGCAGGGTTTTGGACACGCCGGAGCAGCGGAAGAGGGAGGGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGAGTCCGCTTCCGGCACAGTCCAA
CAAGAGACAACGGAATCTTCGAGTCAGGGCCCGGCCTAAGCAGCGGCAGC
CGCAACAGCAGCAGCAACCGCATCAGCAGGAGAGAGCGCGCGTTAGGACA
ACCTCGAACCCTGTGAGTCACGACAATAGTCCTACTGTAGCTACTCTGAC
GGATGCTTGGTTGTTGGGTGGCAATGTTCGGTCGATGAAGCCGAAGATCA
ATCTTTGGTGGGTGATATTTTGGTTGCGGAAACTGCAACACCGCAGCAGA
CAAGAGAGCGTGCGTACCACGCCCGCGCCTACACTGAACATTGCGCGTGC
ATGTTTCCAGCCAGCCACCTGTAACGCGGTTGGGTGAAAAACAATACATT
GTATCTGAGAGTTACGAAAAGAGGATCGATTGCAGTCTATTTGTTTCGTT
TTGTCTCCCTCGCAGGTCACCGCACCTCTCTGTTTCGTCCCGACTGATAT
ATCCCCCCCCCCAACCCCAGCCGCGTGCCCCCGACCGCGGCCCTTGCCCA
AAGCGAAAGCAGCGCGTTGCCGTACCCACCCAATGATTCTGAAGGTCGTC
GGCGATTGACAGCAGCGTCTTGACAGCTATATTACCCCAACACGCGACGC
GCTCGCGCACCCCGCTGATTTGTTTGTACTACAGGCCAAGGCCAATAAGC
GGCGCAAGGGTACCCCGTTTCCCGCGAGCATAACCGAGGGAGACCAGGAA
GATCTATCGGACGGCGGCGGTAACGCGAGCACCGCAGCGGCGGCTGGGCG
GGACAACGGTAGTGGTGGTGGCGGGAGCGACGACACCGCCGCCTCTGCTG
CTGCGAACGGAGCCGCCGGCTCCGAGACGTCATCCCCAGCGACCGGCAAG
ACGAAGTGGGGTAGTGGGAAGAGGTCGGCGGCGGTGGCGGCGGCGGCGTC
TGATGATACGACGGCGGGGACCAATGGGAGGGCTAGGAAGCGCAAGGGGA
CGACGAGAAAGGGAAAGCAGAGTCGGTCGGAGGAAGGGGGGCCGCCGCCG
GGGGTCGCCCAACGTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
CAGGCAGCAGCAACACAAGCAGCACGCTGATCAACTGCAGCAGCAGCAGC
AGCAGCTGAGCAGGCACCGACAGCAACAGCACCTGCAGCTTCAGCAGCAC
CTGCACATGCAACTCCAACAGCAGCAGCAGCAACAGCATCCGGCAGCAGG
GGGCGTGCCGATCATGGGGGTGCTCGGGCATGGCCACACCCAACAGCACC
TACACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAG
CAGCAGCAGCCACCGCTCGCGGCCGCAGGCAACGCTGCGTTCGGGTTCGA
CCAGGACGGTGGTCCCGTGCCACGAGCCCAGACGCTCAACTCTTTGCCTT
CCATGACGGGGAGCCTGAGCGTGCAGGTAGTCGAGCTATCTATCTCTCCA
TCCGTCCGTCCGTATGTGTGTGTGTGCTTATATTGTTAGCATCGACCGCG
CTAACCTGCGCACCAATGAAAATACGTCATTCTTGAGTGCGGTTGAAAAC
ACGAAATGCTTCAAAAGCATATGGCCTGGGGCCCCGTGAGGAGGCTTCAT
GTCATGGGGGAGGCTACGCTTCTCTCCGGGTTAAAGCCAGAAATGGTAAC
AACACAAGAAACCCGTCCGTATGTGTGTGTGTGTGCTTTGGTACGTCATT
TTATAGTTTTTGAAGGAGTCATTGGACATACATGGGGCGACCGCTCCACA
GCAGGCGATGTATAACCGTATGCCTGCTTTGCTTGCTGTCGTCCAGAACC
TGGCGATGTTGCTGGGCATGAGCGGAGGGGGCGGCGGCGGCGGCGGTGGT
GCCGGCGGTGCCGCCGAGAGCGGCGGAGGGTCCGGGGCAGGGTCGCATCA
CCTCCCGAGCCATGGTCTCACAGCATCCGGTGAGTTGTGGTGTTGCTGTT
GTTGCTACTAG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig12153:82..3592+ >mRNA_E-fasciculatus_F_contig12153.1673.1 ID=mRNA_E-fasciculatus_F_contig12153.1673.1|Name=mRNA_E-fasciculatus_F_contig12153.1673.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2748bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12153:82..3592+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) TACGCGAGGTCGCCTGCAGGTTTCGGCGCGGGGGACCCACCAACGACAAG ATCATCAGGAGTGGCCACGTACGCGAGGTCGCCTGCAGGTTTCGGCGCGG GGGACCCACCAACGACAAGATCATCAGGAGTGGCCACGGCCGAGAGGTTC CTCTCCCCCAACAGCGGGTCTTGGGGCCAAGAGGGTGGGGGGGACGACGG ACAGGAATCCGAGGAGGAGGAGGAAGGGGAGGGTGGGGGGGGTGACGCGA AGGTACGGGCGAACGGGAGCAGCAGACAGCAGGCCGAGAGGTTCCTCTCC CCCAACAGCGGGTCTTGGGGCCAAGAGGGTGGGGGGGACGACGGACAGGA ATCCGAGGAGGAGGAGGAAGGGGAGGGTGGGGGGGGTGACGCGAAGGTAC GGGCGAACGGGAGCAGCAGACAGCAGCAGGGTTTTGGACACGCCGGAGCA GCGGAAGAGGGAGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGTCC GCTTCCGGCACAGTCCAACAAGAGACAACGGAATCTTCGAGTCAGGGCCC GGCCTAAGCAGCGGCAGCCGCAACAGCAGCAGCAACCGCATCAGCAGGAG AGAGCGCGCGTTAGGACAACCTCGAACCCTCAGGGTTTTGGACACGCCGG AGCAGCGGAAGAGGGAGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGA GTCCGCTTCCGGCACAGTCCAACAAGAGACAACGGAATCTTCGAGTCAGG GCCCGGCCTAAGCAGCGGCAGCCGCAACAGCAGCAGCAACCGCATCAGCA GGAGAGAGCGCGCGTTAGGACAACCTCGAACCCTGCCAAGGCCAATAAGC GGCGCAAGGGTACCCCGTTTCCCGCGAGCATAACCGAGGGAGACCAGGAA GATCTATCGGACGGCGGCGGTAACGCGAGCACCGCAGCGGCGGCTGGGCG GGACAACGGTAGTGGTGGTGGCGGGAGCGACGACACCGCCGCCTCTGCTG CTGCGAACGGAGCCGCCGGCTCCGAGACGTCATCCCCAGCGACCGGCAAG ACGAAGTGGGGTAGTGGGAAGAGGTCGGCGGCGGTGGCGGCGGCGGCGTC TGATGATACGACGGCGGGGACCAATGGGAGGGCTAGGAAGCGCAAGGGGA CGACGAGAAAGGGAAAGCAGAGTCGGTCGGAGGAAGGGGGGCCGCCGCCG GGGGTCGCCCAACGTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA CAGGCAGCAGCAACACAAGCAGCACGCTGATCAACTGCAGCAGCAGCAGC AGCAGCTGAGCAGGCACCGACAGCAACAGCACCTGCAGCTTCAGCAGCAC CTGCACATGCAACTCCAACAGCAGCAGCAGCAACAGCATCCGGCAGCAGG GGGCGTGCCGATCATGGGGGTGCTCGGGCATGGCCACACCCAACAGCACC TACACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAG CAGCAGCAGCCACCGCTCGCGGCCGCAGGCAACGCTGCGTTCGGGTTCGA CCAGGACGGTGGTCCCGTGCCACGAGCCCAGACGCTCAACTCTTTGCCTT CCATGACGGGGAGCCTGAGCGTGCAGGCCAAGGCCAATAAGCGGCGCAAG GGTACCCCGTTTCCCGCGAGCATAACCGAGGGAGACCAGGAAGATCTATC GGACGGCGGCGGTAACGCGAGCACCGCAGCGGCGGCTGGGCGGGACAACG GTAGTGGTGGTGGCGGGAGCGACGACACCGCCGCCTCTGCTGCTGCGAAC GGAGCCGCCGGCTCCGAGACGTCATCCCCAGCGACCGGCAAGACGAAGTG GGGTAGTGGGAAGAGGTCGGCGGCGGTGGCGGCGGCGGCGTCTGATGATA CGACGGCGGGGACCAATGGGAGGGCTAGGAAGCGCAAGGGGACGACGAGA AAGGGAAAGCAGAGTCGGTCGGAGGAAGGGGGGCCGCCGCCGGGGGTCGC CCAACGTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACAGGCAGC AGCAACACAAGCAGCACGCTGATCAACTGCAGCAGCAGCAGCAGCAGCTG AGCAGGCACCGACAGCAACAGCACCTGCAGCTTCAGCAGCACCTGCACAT GCAACTCCAACAGCAGCAGCAGCAACAGCATCCGGCAGCAGGGGGCGTGC CGATCATGGGGGTGCTCGGGCATGGCCACACCCAACAGCACCTACACCAG CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCA GCCACCGCTCGCGGCCGCAGGCAACGCTGCGTTCGGGTTCGACCAGGACG GTGGTCCCGTGCCACGAGCCCAGACGCTCAACTCTTTGCCTTCCATGACG GGGAGCCTGAGCGTGCAGAACCTGGCGATGTTGCTGGGCATGAGCGGAGG GGGCGGCGGCGGCGGCGGTGGTGCCGGCGGTGCCGCCGAGAGCGGCGGAG GGTCCGGGGCAGGGTCGCATCACCTCCCGAGCCATGGTCTCACAGCATCC GGTGAGTTGTGGTGTTGCTGTTGTTGCTACTAGAACCTGGCGATGTTGCT GGGCATGAGCGGAGGGGGCGGCGGCGGCGGCGGTGGTGCCGGCGGTGCCG CCGAGAGCGGCGGAGGGTCCGGGGCAGGGTCGCATCACCTCCCGAGCCAT GGTCTCACAGCATCCGGTGAGTTGTGGTGTTGCTGTTGTTGCTACTAG back to top
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