mRNA_E-fasciculatus_F_contig1215.1670.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1215.1670.1
Unique NamemRNA_E-fasciculatus_F_contig1215.1670.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1215.1670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1215contigE-fasciculatus_F_contig1215:988..1451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size464
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1215.1670.1prot_E-fasciculatus_F_contig1215.1670.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1215 1114..1428 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927724.503734-UTR-E-fasciculatus_F_contig1215:987..11131622927724.503734-UTR-E-fasciculatus_F_contig1215:987..1113Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1215 988..1113 +
1695995666.6802747-UTR-E-fasciculatus_F_contig1215:987..11131695995666.6802747-UTR-E-fasciculatus_F_contig1215:987..1113Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1215 988..1113 +
1622927724.5345469-UTR-E-fasciculatus_F_contig1215:1428..14511622927724.5345469-UTR-E-fasciculatus_F_contig1215:1428..1451Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1215 1429..1451 +
1695995666.7080727-UTR-E-fasciculatus_F_contig1215:1428..14511695995666.7080727-UTR-E-fasciculatus_F_contig1215:1428..1451Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1215 1429..1451 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927724.5217252-CDS-E-fasciculatus_F_contig1215:1113..14281622927724.5217252-CDS-E-fasciculatus_F_contig1215:1113..1428Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1215 1114..1428 +
1695995666.689307-CDS-E-fasciculatus_F_contig1215:1113..14281695995666.689307-CDS-E-fasciculatus_F_contig1215:1113..1428Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1215 1114..1428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1215.1670.1

>prot_E-fasciculatus_F_contig1215.1670.1 ID=prot_E-fasciculatus_F_contig1215.1670.1|Name=mRNA_E-fasciculatus_F_contig1215.1670.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=105bp
MRESRNSVRANGCIALRHDGLKLRVPSFGDSCWIFPKRSAAVLASVSMSR
RGRIIIPFISLGYTCRPAQINSVARYQLASAASLLHLKKKMYQLQAKPRT
LDYA*
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mRNA from alignment at E-fasciculatus_F_contig1215:988..1451+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1215.1670.1 ID=mRNA_E-fasciculatus_F_contig1215.1670.1|Name=mRNA_E-fasciculatus_F_contig1215.1670.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=464bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1215:988..1451+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACCCTAGATATAGCGGGTTTTTCACGGACCCGGTTGCACGCCCTGTACT
CGCTTTCCTTTCCTTTTGGGCCGGGCGGCGGTTGTATGCTGGGGAGGGAA
CAGTTTAAGTTGAGACGGTCTCGTGTATGCGTGAATCACGCAACTCGGTT
CGCGCGAATGGGTGCATTGCTTTACGTCACGATGGACTTAAATTAAGAGT
GCCGTCCTTCGGGGATTCCTGTTGGATTTTTCCAAAAAGATCAGCCGCGG
TTTTGGCATCGGTTTCGATGTCGAGACGTGGCAGAATAATCATTCCATTT
ATCTCGCTTGGGTACACGTGCAGACCTGCTCAAATAAATTCCGTCGCCCG
CTATCAACTGGCCTCAGCGGCCTCGTTGCTCCATTTGAAAAAAAAAATGT
ATCAGTTGCAAGCCAAACCAAGAACTTTAGACTACGCGTGAAATTATGCT
TGTTACGAACGGTA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1215:988..1451+

>mRNA_E-fasciculatus_F_contig1215.1670.1 ID=mRNA_E-fasciculatus_F_contig1215.1670.1|Name=mRNA_E-fasciculatus_F_contig1215.1670.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=630bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1215:988..1451+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGTGAATCACGCAACTCGGTTCGCGCGAATGGGTGCATTGCTTTACG
TCACGATGGACTTAAATTAAGAGTGCCGTCCTTCGGGGATTCCTGTTGGA
TTTTTCCAAAAAGATCAGCCGCGGTTTTGGCATCGGTTTCGATGTCGAGA
CGTGGCAGAATAATCATTCCATTTATCTCGCTTGGGTACACGTGCAGACC
TGCTCAAATAAATTCCGTCGCCCGCTATCAACTGGCCTCAGCGGCCTCGT
TGCTCCATTTGAAAAAAAAAATGTATCAGTTGCAAGCCAAACCAAGAACT
TTAGACTACGCGTGAATGCGTGAATCACGCAACTCGGTTCGCGCGAATGG
GTGCATTGCTTTACGTCACGATGGACTTAAATTAAGAGTGCCGTCCTTCG
GGGATTCCTGTTGGATTTTTCCAAAAAGATCAGCCGCGGTTTTGGCATCG
GTTTCGATGTCGAGACGTGGCAGAATAATCATTCCATTTATCTCGCTTGG
GTACACGTGCAGACCTGCTCAAATAAATTCCGTCGCCCGCTATCAACTGG
CCTCAGCGGCCTCGTTGCTCCATTTGAAAAAAAAAATGTATCAGTTGCAA
GCCAAACCAAGAACTTTAGACTACGCGTGA
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