mRNA_E-fasciculatus_F_contig12141.1668.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12141.1668.1
Unique NamemRNA_E-fasciculatus_F_contig12141.1668.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12141.1668.1 vs. uniprot
Match: A0A6H5L280_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L280_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 6.790e-29
Identity = 81/107 (75.70%), Postives = 85/107 (79.44%), Query Frame = -3 
Query:   47 QSIVLTSHLRELATQIGSPCATTPTGCVLSPRVVFSADVVSAGDGPKASPRSTAXXXXXXXXXXXSWGRRDSETGGGADGRYETPQRRPQRRPHLQGQGRGLRGRAI 367
            +SIVLT HLREL+ QIGSP ATTPTGCVLSPR+  SADV SAGDG KASPRST   XXXXXXXX SWGRRDSETGGGAD RYETP RRP    H  GQG G RG A+
Sbjct:  373 RSIVLTPHLRELSIQIGSPSATTPTGCVLSPRLSCSADV-SAGDGAKASPRSTPAAXXXXXXXX-SWGRRDSETGGGADWRYETPPRRP----HKPGQGGGRRGGAM 473
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BLAST of mRNA_E-fasciculatus_F_contig12141.1668.1 vs. uniprot
Match: D7G9A7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A7_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 3.220e-28
Identity = 84/107 (78.50%), Postives = 88/107 (82.24%), Query Frame = -3 
Query:   47 QSIVLTSHLRELATQIGSPCATTPTGCVLSPRVVFSADVVSAGDGPKASPRSTAXXXXXXXXXXXSWGRRDSETGGGADGRYETPQRRPQRRPHLQGQGRGLRGRAI 367
            +SIVLTSHLRELAT+IGSP ATTPTGCVLSPRV  +ADV SAGDG KASPRSTAXXXXXXXXXXX     DSETGGGAD RYETP RRP    H QGQGRG R RA+
Sbjct:  562 RSIVLTSHLRELATEIGSPSATTPTGCVLSPRVSCAADV-SAGDGAKASPRSTAXXXXXXXXXXXXXXX-DSETGGGADRRYETPPRRP----HRQGQGRGRRSRAM 662
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12141.1668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L280_9PHAE6.790e-2975.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9A7_ECTSI3.220e-2878.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12141contigE-fasciculatus_F_contig12141:32..406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size376
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927724.3878825-CDS-E-fasciculatus_F_contig12141:31..4061622927724.3878825-CDS-E-fasciculatus_F_contig12141:31..406Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12141 32..406 +
1695995666.6326954-CDS-E-fasciculatus_F_contig12141:31..4061695995666.6326954-CDS-E-fasciculatus_F_contig12141:31..406Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12141 32..406 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12141.1668.1prot_E-fasciculatus_F_contig12141.1668.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12141 32..406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12141.1668.1

>prot_E-fasciculatus_F_contig12141.1668.1 ID=prot_E-fasciculatus_F_contig12141.1668.1|Name=mRNA_E-fasciculatus_F_contig12141.1668.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=125bp
RQWRPLPHPVSPPRAVSLDREDLGLDLAGAAAAAAAAGGFRISRPPPLPS
PSRDAPTREAAAAAPPPPPPWSEGTLSAHPRQKQHPPRRLRAATRHNQSA
SSHRGSRSEWPTLAGGTLGQSIDPS
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mRNA from alignment at E-fasciculatus_F_contig12141:32..406+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12141.1668.1 ID=mRNA_E-fasciculatus_F_contig12141.1668.1|Name=mRNA_E-fasciculatus_F_contig12141.1668.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=375bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12141:32..406+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCCAGTGGCGCCCCCTCCCCCACCCGGTCTCGCCCCCCCGGGCCGTATC
GCTCGACCGCGAAGACCTCGGCCTTGACCTTGCAGGTGCGGCCGCCGCTG
CGGCCGCCGCTGGGGGGTTTCGTATCTCCCGTCCGCCCCCCCTCCCGTCT
CCGAGTCGCGACGCCCCCACGAGGGAGGCGGCGGCGGCGGCGCCGCCGCC
GCCGCCGCCGTGGAGCGAGGGGACGCTTTCGGCCCATCCCCGGCAGAAAC
AACATCCGCCGAGAAGACTACGCGCGGCGACAAGACACAACCAGTCGGCG
TCGTCGCACAGGGGGAGCCGATCTGAGTGGCCAACTCTCGCAGGTGGGAC
GTTAGGACAATCGATTGATCCTTCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12141:32..406+

>mRNA_E-fasciculatus_F_contig12141.1668.1 ID=mRNA_E-fasciculatus_F_contig12141.1668.1|Name=mRNA_E-fasciculatus_F_contig12141.1668.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=750bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12141:32..406+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCCAGTGGCGCCCCCTCCCCCACCCGGTCTCGCCCCCCCGGGCCGTATC
GCTCGACCGCGAAGACCTCGGCCTTGACCTTGCAGGTGCGGCCGCCGCTG
CGGCCGCCGCTGGGGGGTTTCGTATCTCCCGTCCGCCCCCCCTCCCGTCT
CCGAGTCGCGACGCCCCCACGAGGGAGGCGGCGGCGGCGGCGCCGCCGCC
GCCGCCGCCGTGGAGCGAGGGGACGCTTTCGGCCCATCCCCGGCAGAAAC
AACATCCGCCGAGAAGACTACGCGCGGCGACAAGACACAACCAGTCGGCG
TCGTCGCACAGGGGGAGCCGATCTGAGTGGCCAACTCTCGCAGGTGGGAC
GTTAGGACAATCGATTGATCCTTCCCGCCAGTGGCGCCCCCTCCCCCACC
CGGTCTCGCCCCCCCGGGCCGTATCGCTCGACCGCGAAGACCTCGGCCTT
GACCTTGCAGGTGCGGCCGCCGCTGCGGCCGCCGCTGGGGGGTTTCGTAT
CTCCCGTCCGCCCCCCCTCCCGTCTCCGAGTCGCGACGCCCCCACGAGGG
AGGCGGCGGCGGCGGCGCCGCCGCCGCCGCCGCCGTGGAGCGAGGGGACG
CTTTCGGCCCATCCCCGGCAGAAACAACATCCGCCGAGAAGACTACGCGC
GGCGACAAGACACAACCAGTCGGCGTCGTCGCACAGGGGGAGCCGATCTG
AGTGGCCAACTCTCGCAGGTGGGACGTTAGGACAATCGATTGATCCTTCC
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