mRNA_E-fasciculatus_F_contig12137.1667.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12137.1667.1
Unique NamemRNA_E-fasciculatus_F_contig12137.1667.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12137.1667.1 vs. uniprot
Match: D8LEC5_ECTSI (Tup_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC5_ECTSI)

HSP 1 Score: 611 bits (1576), Expect = 5.700e-210
Identity = 313/325 (96.31%), Postives = 315/325 (96.92%), Query Frame = 1 
Query:   13 MVEIPDAIPAELSYQVRYEAEEREGGRAAAAKDGLAVELAKSQDLRSVVCCVRFSTDGTKIAAGSHSCVKVFDVNTFKQLYVCRKQVQEEQGAPQTADGGDPYVRAVCFSPDGLSIVAGMEKNSAKVLVLEEEGGRQGAITLSGHESEVYSLDWVSDMIASGSGDGRIRLWDSVTGACKASLGDMGGPQDGVTSV----DTTMVAAASIDRVVHVWSTQTHKILHRLDGHSESVYAITFSADGNRLVSGGLDKTIKASAELELSMIVWDLGPGSEGRLSPQAKTLPGGHKDYVLSVCFSQDGKYIISGSKDRSVTMWDARLMKRV 975
            MVEIPDAIPAELSYQVRYEAEE EGGRAAAAKDGLAVELAKSQDLRSVVCCVRFSTDGTKIAAGSHSCVKVFDVN+FKQLYVCRKQVQEEQGAPQTADGGDPYVRAVCFSPDGLSIVAGMEKNSAKVLVLEEEGGRQGAITLSGHESEVYSLDWVSDMIASGSGDGRIRLWDSVTGACKASLGDMGGPQDGVTSV    DTTMVAAASIDRVVHVWSTQTHKILHRLDGHSESVYAITFSADGNRLVSGGLDKTIKASAE+     VWDLGPGSEGRLSPQAKTLPGGHKDYVLSVCFSQDGKYIISGSKDRSVTMWDARLMKRV
Sbjct:  440 MVEIPDAIPAELSYQVRYEAEEGEGGRAAAAKDGLAVELAKSQDLRSVVCCVRFSTDGTKIAAGSHSCVKVFDVNSFKQLYVCRKQVQEEQGAPQTADGGDPYVRAVCFSPDGLSIVAGMEKNSAKVLVLEEEGGRQGAITLSGHESEVYSLDWVSDMIASGSGDGRIRLWDSVTGACKASLGDMGGPQDGVTSVVLRQDTTMVAAASIDRVVHVWSTQTHKILHRLDGHSESVYAITFSADGNRLVSGGLDKTIKASAEM-----VWDLGPGSEGRLSPQAKTLPGGHKDYVLSVCFSQDGKYIISGSKDRSVTMWDARLMKRV 759
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12137.1667.1 vs. uniprot
Match: A0A835Z1H0_9STRA (TUP1-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1H0_9STRA)

HSP 1 Score: 189 bits (481), Expect = 6.490e-54
Identity = 105/198 (53.03%), Postives = 128/198 (64.65%), Query Frame = 1 
Query:  118 AVELAKSQDLRSVVCCVRFSTDGTKIAAGSHSCVKVFDVNTFKQLYVCRKQVQEEQGAPQTADGGDPYVRAVCFSPDGLSIVAGMEKNSAKVLVLEEEGGRQGAITLSGHESEVYSLDWVSDMIASGSGDGRIRLWDSVTGACKASLGDMGGPQDGVTSV----DTTMVAAASIDRVVHVWSTQTHKILHRLDGHSES 699
            AVEL     L SVVCCVRFS DG+++A GSH CVKVFDV T      C                 DPYVR+VC SPDG  + A ME NSA+VL L E+G     + L GH+SEVYSLDWV  +IA+GSGD ++R+WDS +GAC+  LGD  GP DGVT V    D +++AAASID  VHVW+T    +L+RLD H+ES
Sbjct:    9 AVELEGCLSLGSVVCCVRFSPDGSRLATGSHGCVKVFDVATG-----CSPAPPSPPPLVPLPPPKDPYVRSVCMSPDGERVAAVMENNSARVLSLMEDG--PAPLDLVGHQSEVYSLDWVGALIATGSGDCQVRVWDSNSGACRMVLGDSRGPTDGVTCVAFRPDGSLIAAASIDTTVHVWATADGGLLYRLDSHTES 199
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12137.1667.1 vs. uniprot
Match: A0A329SF69_9STRA (General transcriptional corepressor n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SF69_9STRA)

HSP 1 Score: 176 bits (447), Expect = 7.020e-48
Identity = 96/203 (47.29%), Postives = 132/203 (65.02%), Query Frame = 1 
Query:  118 AVELAKSQDLRSVVCCVRFSTDGTKIAAGSHSCVKVFDVNTFKQLYVCRK-----QVQEEQGAPQTADGGDPYVRAVCFSPDGLSIVAGMEKNSAKV--LVLEEEGGRQGAITLSGHESEVYSLDWVSDMIASGSGDGRIRLWDSVTGACKASLG-DMGGPQDGVTSV----DTTMVAAASIDRVVHVWSTQTHKILHRLDGH 690
            A E+ +S D +SVVCCVRFS+DGT +A+G H   +VFDV T  + ++  +     Q    Q      +  D YVRAVCFSPD   +VAGM +N+ +V  +   EEG       ++GHESE+YSLD+V+D+I SGSGD ++RLWD+  G CK   G + GGP DGVTSV    D  ++AAAS+D+VV +W T+T ++L RL+GH
Sbjct:  154 AAEMHQSMDHQSVVCCVRFSSDGTMMASGCHKTAQVFDVKTGDRKFLVSRPAGSGQTPTSQANAAANEPDDAYVRAVCFSPDCTKLVAGMPQNTIRVWDIASNEEGP-----AMTGHESEIYSLDYVNDLIVSGSGDRKVRLWDARNGQCKKIFGNESGGPSDGVTSVALSPDGRLLAAASLDKVVRIWDTETAQLLDRLEGH 351
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12137.1667.1 vs. uniprot
Match: A0A024UU52_9STRA (Tup_N domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UU52_9STRA)

HSP 1 Score: 179 bits (454), Expect = 2.330e-47
Identity = 93/196 (47.45%), Postives = 132/196 (67.35%), Query Frame = 1 
Query:  121 VELAKSQDLRSVVCCVRFSTDGTKIAAGSHSCVKVFDVNTFKQLYVCRKQVQEEQGAPQTADGGDPYVRAVCFSPDGLSIVAGMEKNSAKVLVLEEEGGRQGAITLSGHESEVYSLDWVSDMIASGSGDGRIRLWDSVTGACKASLG-DMGGPQDGVTSV----DTTMVAAASIDRVVHVWSTQTHKILHRLDGHS 693
            VE+  + D +SVVCCVRFS DGTK+A G H   +VFDV T  + +  ++   +E  AP   +  D YVRAVCFSPDG  +VAGM +N+ ++    +    + A  L GH++E+YSLD+V + I SGSGD ++RLWD+ TG C+A  G + GGP DGVT+V    D  ++AAAS+D+VV +W TQT +++ RL+GH+
Sbjct:  406 VEMFHTLDHQSVVCCVRFSADGTKLATGCHKTAQVFDVQTGARTFWVQRPAIKETAAPAN-EAEDAYVRAVCFSPDGTKLVAGMPQNTIRIW---DMASNEEAPPLIGHDAEIYSLDYVGNHIVSGSGDRKVRLWDARTGQCQAVFGNESGGPSDGVTNVALSPDGRLLAAASLDKVVRIWDTQTTELMDRLEGHN 597
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12137.1667.1 vs. uniprot
Match: H3G6P7_PHYRM (Tup_N domain-containing protein n=21 Tax=Phytophthora TaxID=4783 RepID=H3G6P7_PHYRM)

HSP 1 Score: 177 bits (450), Expect = 2.600e-47
Identity = 96/204 (47.06%), Postives = 133/204 (65.20%), Query Frame = 1 
Query:  118 AVELAKSQDLRSVVCCVRFSTDGTKIAAGSHSCVKVFDVNTFKQLYVCRKQVQEEQGAPQTA------DGGDPYVRAVCFSPDGLSIVAGMEKNSAKV--LVLEEEGGRQGAITLSGHESEVYSLDWVSDMIASGSGDGRIRLWDSVTGACKASLG-DMGGPQDGVTSV----DTTMVAAASIDRVVHVWSTQTHKILHRLDGH 690
            A E+ +S D +SVVCCVRFS+DGT +A+G H   +VFDV T  + ++  +        P +A      +  D YVRAVCFSPD   +VAGM +N+ +V  +   EEG       ++GHESE+YSLD+V+D+I SGSGD ++RLWD+  G CK   G + GGP DGVTSV    D  ++AAAS+D+VV +W T+T ++L RL+GH
Sbjct:  298 AAEMHQSMDHQSVVCCVRFSSDGTMMASGCHKTAQVFDVKTGDRKFLVSRPAGSNGQTPTSAANAAANEADDAYVRAVCFSPDCTKLVAGMPQNTIRVWDIASNEEGP-----AMTGHESEIYSLDYVNDLIVSGSGDRKVRLWDARNGQCKKIFGNESGGPSDGVTSVALSPDGRLLAAASLDKVVRIWDTETAQLLDRLEGH 496
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12137.1667.1 vs. uniprot
Match: A0A418BA83_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418BA83_9STRA)

HSP 1 Score: 179 bits (454), Expect = 1.070e-46
Identity = 93/196 (47.45%), Postives = 132/196 (67.35%), Query Frame = 1 
Query:  121 VELAKSQDLRSVVCCVRFSTDGTKIAAGSHSCVKVFDVNTFKQLYVCRKQVQEEQGAPQTADGGDPYVRAVCFSPDGLSIVAGMEKNSAKVLVLEEEGGRQGAITLSGHESEVYSLDWVSDMIASGSGDGRIRLWDSVTGACKASLG-DMGGPQDGVTSV----DTTMVAAASIDRVVHVWSTQTHKILHRLDGHS 693
            VE+  + D +SVVCCVRFS DGTK+A G H   +VFDV T  + +  ++   +E  AP   +  D YVRAVCFSPDG  +VAGM +N+ ++    +    + A  L GH++E+YSLD+V + I SGSGD ++RLWD+ TG C+A  G + GGP DGVT+V    D  ++AAAS+D+VV +W TQT +++ RL+GH+
Sbjct:  470 VEMFHTLDHQSVVCCVRFSADGTKLATGCHKTAQVFDVQTGARTFWVQRPAIKETAAPAN-EAEDAYVRAVCFSPDGTKLVAGMPQNTIRIW---DMASNEEAPPLIGHDAEIYSLDYVGNHIVSGSGDRKVRLWDARTGQCQAVFGNESGGPSDGVTNVALSPDGRLLAAASLDKVVRIWDTQTTELMDRLEGHN 661
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12137.1667.1 vs. uniprot
Match: A0A6G0XPL3_9STRA (Tup_N domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPL3_9STRA)

HSP 1 Score: 177 bits (448), Expect = 2.260e-46
Identity = 92/195 (47.18%), Postives = 131/195 (67.18%), Query Frame = 1 
Query:  121 VELAKSQDLRSVVCCVRFSTDGTKIAAGSHSCVKVFDVNTFKQLYVCRKQVQEEQGAPQTADGGDPYVRAVCFSPDGLSIVAGMEKNSAKVLVLEEEGGRQGAITLSGHESEVYSLDWVSDMIASGSGDGRIRLWDSVTGACKASLG-DMGGPQDGVTSV----DTTMVAAASIDRVVHVWSTQTHKILHRLDGH 690
            VE+  + D +SVVCCVRFS DGTK+A+G H   +VFDV T  + +  ++        P   +  D YVRAVCFSPDG  +VAGM +N+ ++  +E     + A  L GH++E+YSLD+V++ I SGSGD ++RLWD+ TG C+A  G + GGP DGVT+V    D  ++AAAS+D+VV +W TQT +++ RL+GH
Sbjct:  448 VEMFHTLDHQSVVCCVRFSADGTKLASGCHKTAQVFDVQTGARTFWVQRPAVSGNAQPAN-EAEDAYVRAVCFSPDGKKLVAGMPQNTIRIWDMESN---EEAPPLVGHDAEIYSLDYVNNFIVSGSGDRKVRLWDARTGQCQAIFGNESGGPADGVTNVALSPDGRLLAAASLDKVVRIWDTQTTQLMDRLEGH 638
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12137.1667.1 vs. uniprot
Match: A0A0P1AQC9_PLAHL (WD40 repeat-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AQC9_PLAHL)

HSP 1 Score: 178 bits (451), Expect = 2.370e-46
Identity = 93/201 (46.27%), Postives = 131/201 (65.17%), Query Frame = 1 
Query:  118 AVELAKSQDLRSVVCCVRFSTDGTKIAAGSHSCVKVFDVNTFKQLYVCRK-----QVQEEQGAPQTADGGDPYVRAVCFSPDGLSIVAGMEKNSAKVLVLEEEGGRQGAITLSGHESEVYSLDWVSDMIASGSGDGRIRLWDSVTGACKASLG-DMGGPQDGVTSV----DTTMVAAASIDRVVHVWSTQTHKILHRLDGH 690
            A E+ +S D +SVVCCVRFS+DGT +A+G H   +VFDV T  + Y+  +          Q      +  D YVRAVCFSPD   +VAGM +N+ ++  +   G  +  + ++GHESE+YSLD+V+D+I SGSGD ++RLWD+  G CK   G + GGP DGVTSV    D  ++AAAS+D+VV +W T+T ++L RL+GH
Sbjct:  422 AAEMHQSMDHQSVVCCVRFSSDGTMMASGCHKTAQVFDVKTGDRKYLVSRPAGSGHTPTSQANTAANEPDDAYVRAVCFSPDCTKLVAGMPQNTIRIWDI---GSNEEGLAMTGHESEIYSLDYVNDLIVSGSGDRKVRLWDARNGQCKKIFGNESGGPSDGVTSVALSPDGRLLAAASLDKVVRIWDTETAQLLDRLEGH 619
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12137.1667.1 vs. uniprot
Match: A0A0W8D732_PHYNI (Flavoprotein YCP4 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8D732_PHYNI)

HSP 1 Score: 175 bits (444), Expect = 3.100e-46
Identity = 96/203 (47.29%), Postives = 131/203 (64.53%), Query Frame = 1 
Query:  118 AVELAKSQDLRSVVCCVRFSTDGTKIAAGSHSCVKVFDVNTFKQLYVCRK-----QVQEEQGAPQTADGGDPYVRAVCFSPDGLSIVAGMEKNSAKV--LVLEEEGGRQGAITLSGHESEVYSLDWVSDMIASGSGDGRIRLWDSVTGACKASLG-DMGGPQDGVTSV----DTTMVAAASIDRVVHVWSTQTHKILHRLDGH 690
            A E+ +S D +SVVCCVRFS+DGT +A+G H   +VFDV T  + ++  +     Q    Q      +  D YVRAVCFSPD   +VAGM +N+ +V  +   EEG       ++GHESE+YSLD+V+D+I SGSGD ++RLWD   G CK   G + GGP DGVTSV    D  ++AAAS+D+VV +W T+T ++L RL+GH
Sbjct:  369 AAEMHQSMDHQSVVCCVRFSSDGTMMASGCHKTAQVFDVKTGDRKFLVSRPAGSGQTPTSQANAAANEPDDAYVRAVCFSPDCSKLVAGMPQNTIRVWDIASNEEGP-----AMTGHESEIYSLDYVNDLIVSGSGDRKVRLWDPRNGQCKKIFGNESGGPSDGVTSVALSPDGRLLAAASLDKVVRIWDTETAQLLDRLEGH 566
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12137.1667.1 vs. uniprot
Match: A0A485LC03_9STRA (Aste57867_18943 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LC03_9STRA)

HSP 1 Score: 176 bits (447), Expect = 4.200e-46
Identity = 93/196 (47.45%), Postives = 131/196 (66.84%), Query Frame = 1 
Query:  118 AVELAKSQDLRSVVCCVRFSTDGTKIAAGSHSCVKVFDVNTFKQLYVCRKQVQEEQGAPQTADGGDPYVRAVCFSPDGLSIVAGMEKNSAKVLVLEEEGGRQGAITLSGHESEVYSLDWVSDMIASGSGDGRIRLWDSVTGACKASLG-DMGGPQDGVTSV----DTTMVAAASIDRVVHVWSTQTHKILHRLDGH 690
            AVE+  + D +SVVCCVRFS DGTK+A+G H   +VFDV T  + +  ++         Q  +  D YVRAVCFSPDG  +VAGM +N+ ++    +    + A  L GHE+E+YSLD+V++ I SGSGD ++RLWD+ TG C+A  G + GGP DGVT+V    D  ++AAAS+D+VV +W TQT +++ RL+GH
Sbjct:  493 AVEMFHTLDHQSVVCCVRFSADGTKLASGCHKTAQVFDVQTGARTFWVQRPANGAN-VTQANETEDAYVRAVCFSPDGTKLVAGMPQNTIRIW---DMASNEEAPPLIGHEAEIYSLDYVNNFIVSGSGDRKVRLWDARTGQCQAIFGNESGGPADGVTNVALSPDGRLLAAASLDKVVRIWDTQTTQLMDRLEGH 684
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12137.1667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEC5_ECTSI5.700e-21096.31Tup_N domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835Z1H0_9STRA6.490e-5453.03TUP1-like protein (Fragment) n=1 Tax=Tribonema min... [more]
A0A329SF69_9STRA7.020e-4847.29General transcriptional corepressor n=1 Tax=Phytop... [more]
A0A024UU52_9STRA2.330e-4747.45Tup_N domain-containing protein n=1 Tax=Aphanomyce... [more]
H3G6P7_PHYRM2.600e-4747.06Tup_N domain-containing protein n=21 Tax=Phytophth... [more]
A0A418BA83_9STRA1.070e-4647.45Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6G0XPL3_9STRA2.260e-4647.18Tup_N domain-containing protein n=1 Tax=Aphanomyce... [more]
A0A0P1AQC9_PLAHL2.370e-4646.27WD40 repeat-containing protein n=1 Tax=Plasmopara ... [more]
A0A0W8D732_PHYNI3.100e-4647.29Flavoprotein YCP4 n=1 Tax=Phytophthora nicotianae ... [more]
A0A485LC03_9STRA4.200e-4647.45Aste57867_18943 protein n=1 Tax=Aphanomyces stella... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12137contigE-fasciculatus_F_contig12137:3..3908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score611.3
Seed ortholog evalue2.6e-172
Seed eggNOG ortholog2880.D8LEC5
Preferred nameTUP1
KEGG koko:K06666,ko:K14963
KEGG Pathwayko04011,ko04111,ko04934,map04011,map04111,map04934
GOsGO:0000003,GO:0000122,GO:0000228,GO:0000429,GO:0000430,GO:0000433,GO:0000785,GO:0000790,GO:0000988,GO:0000989,GO:0001076,GO:0001191,GO:0001196,GO:0001198,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006355,GO:0006357,GO:0006950,GO:0006970,GO:0006996,GO:0007154,GO:0007155,GO:0007530,GO:0007531,GO:0007532,GO:0007584,GO:0008150,GO:0008289,GO:0009267,GO:0009372,GO:0009405,GO:0009605,GO:0009607,GO:0009628,GO:0009651,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010565,GO:0010570,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016458,GO:0016584,GO:0017053,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0019747,GO:0019899,GO:0022414,GO:0022607,GO:0022610,GO:0030154,GO:0030447,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031497,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0032502,GO:0032879,GO:0032991,GO:0033554,GO:0033993,GO:0034728,GO:0035091,GO:0035690,GO:0035950,GO:0035952,GO:0035953,GO:0035955,GO:0036033,GO:0036166,GO:0036170,GO:0036171,GO:0036180,GO:0040007,GO:0040008,GO:0040029,GO:0042221,GO:0042304,GO:0042393,GO:0042493,GO:0042594,GO:0042826,GO:0043044,GO:0043156,GO:0043157,GO:0043167,GO:0043168,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043933,GO:0044085,GO:0044111,GO:0044114,GO:0044115,GO:0044182,GO:0044403,GO:0044409,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044764,GO:0044877,GO:0045013,GO:0045014,GO:0045165,GO:0045814,GO:0045827,GO:0045833,GO:0045892,GO:0045893,GO:0045894,GO:0045926,GO:0045934,GO:0045935,GO:0045944,GO:0045990,GO:0046015,GO:0046677,GO:0046688,GO:0046890,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051828,GO:0051832,GO:0051834,GO:0052173,GO:0060255,GO:0060258,GO:0061984,GO:0061985,GO:0061986,GO:0061987,GO:0062012,GO:0065007,GO:0070013,GO:0070784,GO:0070887,GO:0071103,GO:0071214,GO:0071236,GO:0071241,GO:0071248,GO:0071280,GO:0071310,GO:0071396,GO:0071470,GO:0071472,GO:0071473,GO:0071496,GO:0071824,GO:0071840,GO:0072364,GO:0080025,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090088,GO:0090089,GO:0090568,GO:0097305,GO:0097306,GO:0097307,GO:0097308,GO:0098609,GO:0104004,GO:0140110,GO:1900428,GO:1900429,GO:1901700,GO:1901701,GO:1901981,GO:1902679,GO:1902680,GO:1902936,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2000217,GO:2000531,GO:2000877,GO:2000879,GO:2001020,GO:2001141
EggNOG free text desc.WD repeat-containing protein
EggNOG OGsKOG0266@1,KOG0266@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons6
Model size975
Cds size963
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927724.0944633-UTR-E-fasciculatus_F_contig12137:2..141622927724.0944633-UTR-E-fasciculatus_F_contig12137:2..14Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12137 3..14 +
1695995666.5612867-UTR-E-fasciculatus_F_contig12137:2..141695995666.5612867-UTR-E-fasciculatus_F_contig12137:2..14Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12137 3..14 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927724.1056507-CDS-E-fasciculatus_F_contig12137:14..1521622927724.1056507-CDS-E-fasciculatus_F_contig12137:14..152Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12137 15..152 +
1695995666.5743878-CDS-E-fasciculatus_F_contig12137:14..1521695995666.5743878-CDS-E-fasciculatus_F_contig12137:14..152Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12137 15..152 +
1622927724.115554-CDS-E-fasciculatus_F_contig12137:673..7901622927724.115554-CDS-E-fasciculatus_F_contig12137:673..790Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12137 674..790 +
1695995666.585171-CDS-E-fasciculatus_F_contig12137:673..7901695995666.585171-CDS-E-fasciculatus_F_contig12137:673..790Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12137 674..790 +
1622927724.125017-CDS-E-fasciculatus_F_contig12137:1475..16581622927724.125017-CDS-E-fasciculatus_F_contig12137:1475..1658Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12137 1476..1658 +
1695995666.5969865-CDS-E-fasciculatus_F_contig12137:1475..16581695995666.5969865-CDS-E-fasciculatus_F_contig12137:1475..1658Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12137 1476..1658 +
1622927724.1349583-CDS-E-fasciculatus_F_contig12137:2492..26391622927724.1349583-CDS-E-fasciculatus_F_contig12137:2492..2639Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12137 2493..2639 +
1695995666.6074843-CDS-E-fasciculatus_F_contig12137:2492..26391695995666.6074843-CDS-E-fasciculatus_F_contig12137:2492..2639Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12137 2493..2639 +
1622927724.3438869-CDS-E-fasciculatus_F_contig12137:3277..34781622927724.3438869-CDS-E-fasciculatus_F_contig12137:3277..3478Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12137 3278..3478 +
1695995666.6157703-CDS-E-fasciculatus_F_contig12137:3277..34781695995666.6157703-CDS-E-fasciculatus_F_contig12137:3277..3478Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12137 3278..3478 +
1622927724.3539548-CDS-E-fasciculatus_F_contig12137:3731..39081622927724.3539548-CDS-E-fasciculatus_F_contig12137:3731..3908Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12137 3732..3908 +
1695995666.6240246-CDS-E-fasciculatus_F_contig12137:3731..39081695995666.6240246-CDS-E-fasciculatus_F_contig12137:3731..3908Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12137 3732..3908 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12137.1667.1prot_E-fasciculatus_F_contig12137.1667.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12137 15..3908 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12137.1667.1

>prot_E-fasciculatus_F_contig12137.1667.1 ID=prot_E-fasciculatus_F_contig12137.1667.1|Name=mRNA_E-fasciculatus_F_contig12137.1667.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=321bp
MVEIPDAIPAELSYQVRYEAEEREGGRAAAAKDGLAVELAKSQDLRSVVC
CVRFSTDGTKIAAGSHSCVKVFDVNTFKQLYVCRKQVQEEQGAPQTADGG
DPYVRAVCFSPDGLSIVAGMEKNSAKVLVLEEEGGRQGAITLSGHESEVY
SLDWVSDMIASGSGDGRIRLWDSVTGACKASLGDMGGPQDGVTSVDTTMV
AAASIDRVVHVWSTQTHKILHRLDGHSESVYAITFSADGNRLVSGGLDKT
IKASAELELSMIVWDLGPGSEGRLSPQAKTLPGGHKDYVLSVCFSQDGKY
IISGSKDRSVTMWDARLMKRV
back to top

mRNA from alignment at E-fasciculatus_F_contig12137:3..3908+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12137.1667.1 ID=mRNA_E-fasciculatus_F_contig12137.1667.1|Name=mRNA_E-fasciculatus_F_contig12137.1667.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3906bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12137:3..3908+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AATGGGAACGGGATGGTAGAAATTCCGGATGCTATCCCGGCGGAGCTTAG
CTACCAAGTGAGGTACGAGGCGGAGGAACGGGAGGGGGGGAGAGCGGCGG
CTGCCAAGGACGGGCTTGCTGTGGAGCTGGCCAAGTCTCAGGATTTGAGG
GTGAGGCGCAGAGATGGGTTGGGCGGGGGGATCCGCAAAAGTGTTGGTGC
ATGTCTAATGCTGTGGTTTGGTTTGTCGCTCTTCATTTAGTGCGGTGCGA
TATAGAGCTGGCGAAGGCGGCTCCCGAGTCGCGGTGAATACGAAGCAGGT
GCGAGGGAGAGGAAGGAAATATTAATGTTTCCGGCATCTCACGGGTTTCA
CACACAAATACGTTTGGCATGCCGAGAATCTTGGTAAGAGTCGTAGGTTT
GCCACAGAGTAGTTGTTGATTCATGGACCCGTCTTGAAAGCGATGAAAGC
AAGAAGTGCACGTTTGCCCGTCGTATGGTCTACTGTACTACCTTCCACGT
TGCCGTTGCTGCTGTGATGTGGCTCTTGTGGTGTCTTTCGTGTGCGCTGC
AAGCATGTGGAATCGTTTTGGTTCCTTTTCGCCCAATGCGGCGAACTAAC
GATCTTCGCCTGCTGTTTTTCCATGTGTGGTACTTGCATCTTCCGTCCTG
TGGTTTCGATGATATTTCTAGAGCGTGGTTTGCTGCGTGAGGTTCAGCAC
AGACGGGACTAAGATCGCAGCCGGGAGCCACTCGTGCGTCAAGGTCTTCG
ACGTCAACACCTTCAAACAGCTTTACGTCTGCCGCAAGGTTTGTGTGTGT
GTGACCCGGACGGAAAGAGGCGACACACGTCAGAGAGACGTACGCGTAGA
GGGGGAGAGAGGCTAGGCAGTCGGACAGAGAAACAAGGCAGGCAGGCAGA
CAGAGAAGACAAAAGACAGAAACCGTTGTGGTGCAGCTGTGCCAATTTTC
TGTTGAAGATAAATCAGTTTCATCAGCTTCTCCTTGGGATATTCTCCGTG
TTTGGTCTCGAAAATCGTCTTCGGGCGCGTCATTCCCTTTCAATATCAGA
TAGACAACGCTACACCTGGCTTGTCACTGCTGTTAAGTATAGCCTGTACA
GGTCTGGTTGTCATGTCATGCTTGCAGCGCCGTTGCACCATTGGCTTTCT
GGTTCCGTTGTGCGAAACATCGGCCACATGAGACAACCACGAAGTAAGCT
ACGACATAAAATCTTCCCTGTGGGTGTTCCCCTATCCTTCATCCGAGGAA
AAAATGAGGTGCCGTAGGGAAGCCATACGAATTAAAGGTTGTTTGTACAG
AGATGACGGGACCACCCAGTCATCGAGACCCCTGAAACAACACAGAATGC
AAGAGAGAGGGTCACTGCCTCTCTATTCTCCGTTTTTGTTTGCAACGTGC
TCCTCAAATGTGCCTGTCACAGCTTAGTCCCGACTTCGTTTGCTCGCCCG
TTCGTGTCGTGTGTTTGGAGCAGCAAGTCCAAGAGGAGCAGGGGGCACCG
CAGACCGCAGACGGCGGGGACCCCTACGTCCGCGCGGTGTGCTTCAGCCC
GGACGGGCTGTCCATTGTCGCGGGCATGGAGAAGAACAGCGCCAAGGTGC
TGGTGCTCGAGGAAGAAGGGGGTCGGCAGGGGGCGATAACGCTGTCTGGG
CACGAGGTATGGCCGTTTTTTTCTGATGAGGGTTGGTGTGATGTTTTGTT
TCCCGGCATCGGACCGTTGCTAGGGAGTTCAGTGGCATTCGTCTTGCGGT
CTCACCATCGAAGCGCTTGTCAACAACCGCTAGGGCTTTTGGCAACCCAG
TTTACTGGAAACTTGTTCAATCGATACCAATCTCGGCTAGTGTATTCGCA
ATGGATTGGTGTTGATGCGTATCGATCGGCGATAGGCGTTGTAGGACCAA
GCGGTTGGACAATGATTCGGATCGATACCTTTTGGACTAGGCAAGAGGTG
GCGATGCAATCGAGCAGTACCTGTTGGACATGTCACCATTTGTTTACGCA
AGCAGTTTATCGATTGACCCCTCCATCCACCTATGAGTTTGGAAACACCG
CCAGGTAATGATACGCCACTCCAGTAGCCATTCACGTACATTATCGCGAT
TCAATACCTTGGGAGCGGCCAAGGCGTGGCTTACATGTGCACATTTTATC
CCTCTTTTTCGGTTCATGTCTTAGCTTCCATCGTTGTTGATCTGCCCGTA
CAACTAACTGCCTGCGCTCCAACACACAACGCACGTACAGCAATCCAATG
AACCCGAAAACATGTTCTTGGGAGCATGGACTGATAACATCAAGCAGCCG
AGGACAGCAGTCAAACCCCAACATCGCACGTATTGTGGAACCGAGACAAC
CCAGTCGGGAACGAATCACCCCCACACCCATGACCACGACACCACGATCT
AACTTACTGACAACGTCCTCAACGCGACGGACGTCACGTGCTTGTTGCGA
TGTGGCATCACATGGCATGGCCGACGGCGTGGCCTCCCAGAGCGAGGTGT
ACTCGTTGGACTGGGTTTCCGATATGATCGCCTCGGGGAGCGGGGACGGG
CGAATCCGTCTGTGGGACTCGGTCACGGGAGCCTGCAAGGCGTCGCTGGG
AGACATGGGGGGCCCGCAGGATGGAGTCACATCGGTCGTTCTCAGACAGG
CGAGAGATCGGGGGGGACGAGAGGGGTGATTAAGAAGGTTGCTGTATTGT
TTCTGGGGTATACTTGTAGAAGTGACCTTGGCGTTGCGTCATCCGTGTGG
AGACCGCTGAGCAGTGCTACGGTTAACATGACGAGTGACCGACTTTGATA
GCTCGATTGCTCCACGAACAAGAGGCTGCCGAATTCCGAACAGTGTTACA
TAGTGTTGCATGTGTCTCGTCGAGAGCTTTCCTTGCGCATATTGGTCGCC
TTTTGCACCCTCTTGTTTCTGGTGCACTCCAGCTTTGAAAGTCTGTCCAC
AGATCGCGCAATGATGTTGATGTTATTGCTGTTGTCTTGACGCTAAAAAC
CGTTCCGGTCTCTTGTCACAGTACCTTCCACTTTCCATATAATAATAATT
CCAAGCGACGCGGACCCCTTCCGTGATCACAGACAATCAATCTACGAGTC
AGAGATTGGATACCATATTAAGTTGAGGCTTACGTTCTTTACCAGAGAAG
AACAGTTGCACAGTAACCCCCTATCCTGAAACACATGTATTAAATAGTTC
TTGTTGCGTGACTGCTGTGTGTATGCGTTCAAACTCTATATTGGCGACGT
TGCTACTTGATGCTTGATAACACAGGACACTACGATGGTGGCGGCTGCCT
CGATAGACAGAGTGGTCCACGTCTGGTCGACCCAGACCCACAAGATACTC
CACCGCCTGGACGGCCACTCGGAGTCCGTCTACGCCATCACCTTCTCGGC
GGACGGAAACAGGCTAGTCTCGGGAGGGTTGGACAAGACCATCAAGGCGA
GTGCTGAGCTGGAGCTCTCGATGATTGTGGTTGTGCGGTGTGAAGTGGCC
TCGACCACGCTAACCGGCTGGCGAATGAGAGGGCGCCGATCTTCAAACTG
CGGCGTGTTGGATCGCGAAGTAGATATCCTATCCATGGTCGGGCTCCCTC
GGTACCTTGTGATTGTATACTGATTGAAAACCGGGGAAACGATATGCCGC
TGTACTGTTGTGTACCGTTGTCCAAAAAATATCAAAATAGCACGTGTTTT
TTGTTTTTTGGCGTTGACTTATTTGCCAGGTGTGGGACCTGGGACCGGGG
TCGGAGGGGAGGCTTTCCCCTCAGGCGAAGACGCTCCCCGGTGGGCACAA
GGACTACGTGCTGTCGGTGTGCTTCTCGCAGGACGGCAAGTACATCATCT
CGGGATCCAAGGACAGATCGGTCACCATGTGGGATGCTAGGCTCATGAAG
CGGGTG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12137:3..3908+

>mRNA_E-fasciculatus_F_contig12137.1667.1 ID=mRNA_E-fasciculatus_F_contig12137.1667.1|Name=mRNA_E-fasciculatus_F_contig12137.1667.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1926bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12137:3..3908+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTAGAAATTCCGGATGCTATCCCGGCGGAGCTTAGCTACCAAGTGAG
GTACGAGGCGGAGGAACGGGAGGGGGGGAGAGCGGCGGCTGCCAAGGACG
GGCTTGCTGTGGAGCTGGCCAAGTCTCAGGATTTGAGGATGGTAGAAATT
CCGGATGCTATCCCGGCGGAGCTTAGCTACCAAGTGAGGTACGAGGCGGA
GGAACGGGAGGGGGGGAGAGCGGCGGCTGCCAAGGACGGGCTTGCTGTGG
AGCTGGCCAAGTCTCAGGATTTGAGGAGCGTGGTTTGCTGCGTGAGGTTC
AGCACAGACGGGACTAAGATCGCAGCCGGGAGCCACTCGTGCGTCAAGGT
CTTCGACGTCAACACCTTCAAACAGCTTTACGTCTGCCGCAAGAGCGTGG
TTTGCTGCGTGAGGTTCAGCACAGACGGGACTAAGATCGCAGCCGGGAGC
CACTCGTGCGTCAAGGTCTTCGACGTCAACACCTTCAAACAGCTTTACGT
CTGCCGCAAGCAAGTCCAAGAGGAGCAGGGGGCACCGCAGACCGCAGACG
GCGGGGACCCCTACGTCCGCGCGGTGTGCTTCAGCCCGGACGGGCTGTCC
ATTGTCGCGGGCATGGAGAAGAACAGCGCCAAGGTGCTGGTGCTCGAGGA
AGAAGGGGGTCGGCAGGGGGCGATAACGCTGTCTGGGCACGAGCAAGTCC
AAGAGGAGCAGGGGGCACCGCAGACCGCAGACGGCGGGGACCCCTACGTC
CGCGCGGTGTGCTTCAGCCCGGACGGGCTGTCCATTGTCGCGGGCATGGA
GAAGAACAGCGCCAAGGTGCTGGTGCTCGAGGAAGAAGGGGGTCGGCAGG
GGGCGATAACGCTGTCTGGGCACGAGAGCGAGGTGTACTCGTTGGACTGG
GTTTCCGATATGATCGCCTCGGGGAGCGGGGACGGGCGAATCCGTCTGTG
GGACTCGGTCACGGGAGCCTGCAAGGCGTCGCTGGGAGACATGGGGGGCC
CGCAGGATGGAGTCACATCGGTCAGCGAGGTGTACTCGTTGGACTGGGTT
TCCGATATGATCGCCTCGGGGAGCGGGGACGGGCGAATCCGTCTGTGGGA
CTCGGTCACGGGAGCCTGCAAGGCGTCGCTGGGAGACATGGGGGGCCCGC
AGGATGGAGTCACATCGGTCGACACTACGATGGTGGCGGCTGCCTCGATA
GACAGAGTGGTCCACGTCTGGTCGACCCAGACCCACAAGATACTCCACCG
CCTGGACGGCCACTCGGAGTCCGTCTACGCCATCACCTTCTCGGCGGACG
GAAACAGGCTAGTCTCGGGAGGGTTGGACAAGACCATCAAGGCGAGTGCT
GAGCTGGAGCTCTCGATGATTGACACTACGATGGTGGCGGCTGCCTCGAT
AGACAGAGTGGTCCACGTCTGGTCGACCCAGACCCACAAGATACTCCACC
GCCTGGACGGCCACTCGGAGTCCGTCTACGCCATCACCTTCTCGGCGGAC
GGAAACAGGCTAGTCTCGGGAGGGTTGGACAAGACCATCAAGGCGAGTGC
TGAGCTGGAGCTCTCGATGATTGTGTGGGACCTGGGACCGGGGTCGGAGG
GGAGGCTTTCCCCTCAGGCGAAGACGCTCCCCGGTGGGCACAAGGACTAC
GTGCTGTCGGTGTGCTTCTCGCAGGACGGCAAGTACATCATCTCGGGATC
CAAGGACAGATCGGTCACCATGTGGGATGCTAGGCTCATGAAGCGGGTGG
TGTGGGACCTGGGACCGGGGTCGGAGGGGAGGCTTTCCCCTCAGGCGAAG
ACGCTCCCCGGTGGGCACAAGGACTACGTGCTGTCGGTGTGCTTCTCGCA
GGACGGCAAGTACATCATCTCGGGATCCAAGGACAGATCGGTCACCATGT
GGGATGCTAGGCTCATGAAGCGGGTG
back to top