prot_E-fasciculatus_F_contig12136.1666.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig12136.1666.1
Unique Nameprot_E-fasciculatus_F_contig12136.1666.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length235
Homology
BLAST of mRNA_E-fasciculatus_F_contig12136.1666.1 vs. uniprot
Match: D7FME4_ECTSI (5\'-3\' exoribonuclease 1 (Exonuclease 2) (Exonuclease II) (Exo II) (P140) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME4_ECTSI)

HSP 1 Score: 434 bits (1115), Expect = 5.390e-147
Identity = 214/225 (95.11%), Postives = 219/225 (97.33%), Query Frame = 0
Query:    1 MNGKRNPWEAVNVLPFIDAYRLRAAVKEMCPPTALSPQEAERNTRGQVVEYYHDPFMGRKEMSCNPEIGLADIPQCTASSRVVPFSIEPGECFRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTPSRYETLVLELKRPPVLPPASALSGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKGGGGKKSKSKTRVKVSTFTDEAAGRWRIKAAEEQ 225
            MNGKRNPWEAVNVLPFIDAYRLRAAVKE+CPPTALSPQEAERNTRGQVVEY+HD F+ RKEMSCNPEIGLADIPQCTASSR+VPFSIEPGECFRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGT SRYETLVLELKRPPVLPPASALSGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKGGGGKK K  TRVKVSTFTDEAAGRWR+KAAEEQ
Sbjct:    1 MNGKRNPWEAVNVLPFIDAYRLRAAVKELCPPTALSPQEAERNTRGQVVEYFHDAFVSRKEMSCNPEIGLADIPQCTASSRIVPFSIEPGECFRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTASRYETLVLELKRPPVLPPASALSGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKGGGGKKRK--TRVKVSTFTDEAAGRWRLKAAEEQ 223          
BLAST of mRNA_E-fasciculatus_F_contig12136.1666.1 vs. uniprot
Match: A0A835Z4G8_9STRA (XRN 5'-3' exonuclease N-terminus-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4G8_9STRA)

HSP 1 Score: 190 bits (482), Expect = 8.920e-52
Identity = 93/174 (53.45%), Postives = 121/174 (69.54%), Query Frame = 0
Query:    1 MNGKRNPWEAVNVLPFIDAYRLRAAVKEMCPPTALSPQEAERNTRGQVVEYYHDPFMGRKEMSCNPEIGLADIPQCTASSRVVPFSIEPGECFRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTPSRYETLVLELKRPPVLPPASALSGKVLGRSAYLNWPLMHEAQ 174
            MNGKRNPWEAVN+LPFIDA RL AAV E CP   L+P+E +RNT G V+EY +        +SCNPEIGL+DI QC +  + +P+SIE    F   LP  + IP AGFPSL+VL +   E + + +N FG+ SRY T+VL L+RP  LP A  L+ +V+GRS ++NWPL+HEA+
Sbjct:  547 MNGKRNPWEAVNLLPFIDASRLFAAVHERCPVQLLTPEERKRNTYGAVLEYTYSEHATGTVVSCNPEIGLSDIRQCVSEEKELPWSIESHTSFTSALPLGSTIPLAGFPSLNVLPIEQAEAKPIKLNVFGSESRYSTMVLTLRRPRGLPSAEQLAPRVIGRSVFVNWPLLHEAK 720          
BLAST of mRNA_E-fasciculatus_F_contig12136.1666.1 vs. uniprot
Match: A0A7S2PS12_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PS12_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.930e-47
Identity = 91/218 (41.74%), Postives = 130/218 (59.63%), Query Frame = 0
Query:    1 MNGKRNPWEAVNVLPFIDAYRLRAAVKEMCPPTALSPQEAERNTRGQVVEYYHDPFMGRKEMSCNPEIGLADIPQCTASSRVVPFSIEPGECFRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTPSRYETLVLELKRPPVLPPASALSGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKGGGGKKSKSKTRVKVSTFTDEAAGRWR 218
            MNGK+NPWE VN+LPFID   L+  +K +CP ++L+ +E  RN RGQV  Y +D        SCN EIGL DI  C +  +++        CF+PE+     IP  GFPSL+VL + + E   + VNCFG+ S+Y T+VL L++ P LP  +AL+ +VLG+  ++NWP+MHEA+VV ISD   E R+                 K  ++TD+ + RW+
Sbjct:  307 MNGKKNPWEGVNLLPFIDVALLKETIKNLCPDSSLTAEEFRRNKRGQVFLYSYDLTCSETVPSCNREIGLPDIHSCHSHVKMLDAVDRTDLCFKPEVIPGTKIPYPGFPSLNVLPICNTELTAIGVNCFGSSSKYSTMVLHLQKLPQLPAVAALAPRVLGQILFINWPMMHEAKVVAISDSTTEIRVN---------------GKTKSYTDKESERWQ 509          
BLAST of mRNA_E-fasciculatus_F_contig12136.1666.1 vs. uniprot
Match: K0STL9_THAOC (5'-3' exoribonuclease 1 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0STL9_THAOC)

HSP 1 Score: 169 bits (428), Expect = 1.760e-44
Identity = 86/187 (45.99%), Postives = 114/187 (60.96%), Query Frame = 0
Query:    1 MNGKRNPWEAVNVLPFIDAYRLRAAVKEMCPPTALSPQEAERNTRGQVVEYYHDPFMGRKEMSCNPEIGLADIPQCTASSRVVPFSIEPGECFRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTPSRYETLVLELKRPPVLPPASALSGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRL 187
            MNGKRNPWE VN+LPFIDA RL+ A+K+ CP   L+ +E  RN  GQV  Y +D        SCN +IGL +I +C +    +  S E    F PEL     IP  GFPSL+VL +  VE R   +NCFG  S+Y   +L +   P LP A  L+  ++G+S Y+NWP+MHEA+VV ++D K E R+
Sbjct:  619 MNGKRNPWEGVNILPFIDANRLKDAIKDNCPDRLLTAEERNRNRVGQVFCYSYDEACNDTIPSCNRDIGLPNIEKCHSRVITIDNSSESTVSFSPELIPGTKIPYPGFPSLNVLPIERVELRNAGLNCFGFASKYPNTILTMHTLPQLPSAEQLAANLIGKSIYVNWPMMHEAKVVAVTDSKSEVRM 805          
BLAST of mRNA_E-fasciculatus_F_contig12136.1666.1 vs. uniprot
Match: A0A7S1UYY6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UYY6_9STRA)

HSP 1 Score: 168 bits (426), Expect = 2.130e-44
Identity = 86/192 (44.79%), Postives = 114/192 (59.38%), Query Frame = 0
Query:    1 MNGKRNPWEAVNVLPFIDAYRLRAAVKEMCPPTALSPQEAERNTRGQVVEYYHDPFMGRKEMSCNPEIGLADIPQCTASSRVVPFSIEPGECFRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTPSRYETLVLELKRPPVLPPASALSGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKG 192
            MNGKRNPWE VN+LPFID   L+  +    P + L+  E +RN+RG V  Y HDP       S N  IGL DI +C +    +        CF+PEL     +P  GFPS++VL + S E  K  +NCFG+ S+Y  ++L L + P +PP   L+G +LG S Y+NWP+MHEA+VV +SD   E RL  VKG
Sbjct:   10 MNGKRNPWEGVNLLPFIDVKLLKQTIATQVPNSTLTNDERKRNSRGVVFMYEHDPTANETIPSPNTSIGLIDIQRCHSKIEEIDEPDRLDICFKPELVPGTKLPYPGFPSMNVLPIASFELTKTGLNCFGSASKYPNMILTLHQLPQMPPVEQLAGNILGHSLYINWPMMHEARVVAVSDAVSEARL--VKG 199          
BLAST of mRNA_E-fasciculatus_F_contig12136.1666.1 vs. uniprot
Match: A0A1Z5JKV0_FISSO (5'-3' exoribonuclease 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKV0_FISSO)

HSP 1 Score: 168 bits (426), Expect = 3.250e-44
Identity = 92/224 (41.07%), Postives = 126/224 (56.25%), Query Frame = 0
Query:    1 MNGKRNPWEAVNVLPFIDAYRLRAAVKEMCPPTALSPQEAERNTRGQVVEYYHDPFMGRKEMSCNPEIGLADIPQCTASSRVVPFSIEPGEC-FRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTPSRYETLVLELKRPPVLPPASALSGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKGGGGKKSKSKTRVKVSTFTDEAAGRWRIKAAE 223
            MNGK+NPWE VN+LPFID   L++ V++ CP + LS  E  RN+ G +  Y HDP       S NP IGL DI  C ++  V+ F   P    F P+L     +P  GFPSL+VL + S+   K  +NCFG PS+Y   +L L   P L P   L+  +LG+S ++NWP+MHEA+V+G+S E  E ++       GK+       KVS F    A +WR  + E
Sbjct:  551 MNGKKNPWEGVNLLPFIDIALLKSTVEKFCPDSKLSTAELVRNSMGTIYCYKHDPTSIETVTSPNPSIGLPDISVCHSTISVIEFDEGPSTSKFEPKLVSGTQLPYPGFPSLNVLPIASIALTKAGLNCFGVPSKYLNTILHLTELPELAPIEQLAESLLGKSVFVNWPMMHEAKVIGLSSESREIKIL-----NGKR-------KVSEFGKVEADKWRTDSME 762          
BLAST of mRNA_E-fasciculatus_F_contig12136.1666.1 vs. uniprot
Match: A0A6H5KVU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU6_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 2.630e-41
Identity = 83/92 (90.22%), Postives = 86/92 (93.48%), Query Frame = 0
Query:  134 RYETLVLELKRPPVLPPASALSGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKGGGGKKSKSKTRVKVSTFTDEAAGRWRIKAAEEQ 225
            RY TLVL LKRPPVLPPASAL+GKVLGRSAYLNWPLMHEAQVVGISDEKEEY LEEVKGGGGKK K  TRVKV+TFTDEAAGRWR+KAAEEQ
Sbjct:    2 RYATLVLALKRPPVLPPASALAGKVLGRSAYLNWPLMHEAQVVGISDEKEEYLLEEVKGGGGKKLK--TRVKVNTFTDEAAGRWRLKAAEEQ 91          
BLAST of mRNA_E-fasciculatus_F_contig12136.1666.1 vs. uniprot
Match: A0A7S2PSP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PSP2_9STRA)

HSP 1 Score: 160 bits (404), Expect = 2.670e-41
Identity = 86/203 (42.36%), Postives = 118/203 (58.13%), Query Frame = 0
Query:    1 MNGKRNPWEAVNVLPFIDAYRLRAAVKEMCPPTALSPQEAERNTRGQVVEYYHDPFMGRKEMSCNPEIGLADIPQCTASSRVVPFSIEPGECFRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTPSRYETLVLELKRPPVLPPASALSGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKGGGGKKSKSKTR 203
            MNGKRNPWE VN+LPFID   L+  + + CP +AL+  E  RN  G+V  Y +D  +     SCN +IGL +I +C +   ++         F+PEL     IP  GFPSL+VL +  VE R   VNCFG PS+Y  ++L +   P +P A  L+  ++GR+ ++NWP+MHEA+VV +SD   E R          K KSKTR
Sbjct:  567 MNGKRNPWEGVNILPFIDGNLLKQTIAKHCPDSALTADERHRNRVGKVYCYTYDAAVNDTVPSCNRDIGLPNIVKCNSRVDIIENLSVSNISFKPELVPGTKIPYPGFPSLNVLPIEHVELRNAGVNCFGFPSKYPNMILTMHTLPQMPGAVQLAENLIGRNIFVNWPMMHEAKVVAVSDSTCEVRKP--------KGKSKTR 761          
BLAST of mRNA_E-fasciculatus_F_contig12136.1666.1 vs. uniprot
Match: A0A7S4RC29_9STRA (5'-3' exoribonuclease 1 n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RC29_9STRA)

HSP 1 Score: 157 bits (398), Expect = 1.840e-40
Identity = 89/221 (40.27%), Postives = 121/221 (54.75%), Query Frame = 0
Query:    1 MNGKRNPWEAVNVLPFIDAYRLRAAVKEMCPPTALSPQEAERNTRGQVVEYYHDPFMGRKEMSCNPEIGLADIPQCTASSRVVPFSIEPGECFRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTPSRYETLVLELKRPPVLPPASALSGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKGGGGKKSKSKTRVKVSTFTDEAAGRWRIKA 221
            MNGKRNPWE VN+LPFID + L++++ + CP   L+  E  RN  G+V  Y  DP       S N +IGL DI +C +   +   +      FRP L     IP  GFPSL+VL + S+E   V +N FG PS+Y T +L LK    LP A+ L+   LG+S ++NWP+MHE++VV +SD   E R            K K + KV  FT     RW  ++
Sbjct:  571 MNGKRNPWEGVNILPFIDVHLLKSSISKYCPDEVLTADERNRNRLGKVYLYTFDPASNDMVPSFNKDIGLPDIQKCNSRVDIFEENDSTDISFRPTLVPGTQIPYPGFPSLNVLPLVSIELIPVGLNIFGMPSKYATTMLTLKPMGTLPAANDLADHFLGKSLFINWPMMHESRVVAVSDAVCEVR------------KVKKKKKVRWFTPPETERWETES 779          
BLAST of mRNA_E-fasciculatus_F_contig12136.1666.1 vs. uniprot
Match: A0A6V1PVC7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PVC7_HETAK)

HSP 1 Score: 157 bits (397), Expect = 2.470e-40
Identity = 86/192 (44.79%), Postives = 113/192 (58.85%), Query Frame = 0
Query:    2 NGKRNPWEAVNVLPFIDAYRLRAAVKEMCPPTALSPQEAERNTRGQVVEYYHDPFMGRKEMSCNPEIGLADIPQCTASSRVVPFSIEPGECFRPELPHDAI-----IPSAGFPSLHVLTVGSVEERKVPVNCFGTPSRYETLVLELKRPPVLPPASALSGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLE 188
            NGKRNPWEAVN+LPFIDA R+RAAV   CP   L+ +E  RN  G V+ Y+HDP       SCNPEIGL D+ +C +S  +V       E       H A+     +P  G+PSL  L    V    + +NCFG+ SRY+TLVL+L  P  +P A   + ++LGR+ ++NWP +HEA VVG  D+    R E
Sbjct:  425 NGKRNPWEAVNLLPFIDADRMRAAVAAHCPDRLLTEEERRRNRIGPVLLYHHDPANTATIPSCNPEIGLPDLLRCASS--IVELPTNAFEDVAEGTLHSALRPGVTLPLPGYPSLATLPRRGVRAEAIGLNCFGSGSRYQTLVLDLDPPAQVPTAEEAARELLGRTVFVNWPNLHEALVVGAQDQHTAARRE 614          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12136.1666.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FME4_ECTSI5.390e-14795.115\'-3\' exoribonuclease 1 (Exonuclease 2) (Exonucl... [more]
A0A835Z4G8_9STRA8.920e-5253.45XRN 5'-3' exonuclease N-terminus-domain-containing... [more]
A0A7S2PS12_9STRA1.930e-4741.74Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
K0STL9_THAOC1.760e-4445.995'-3' exoribonuclease 1 n=1 Tax=Thalassiosira ocea... [more]
A0A7S1UYY6_9STRA2.130e-4444.79Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A1Z5JKV0_FISSO3.250e-4441.075'-3' exoribonuclease 1 n=2 Tax=Fistulifera solari... [more]
A0A6H5KVU6_9PHAE2.630e-4190.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2PSP2_9STRA2.670e-4142.36Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S4RC29_9STRA1.840e-4040.275'-3' exoribonuclease 1 n=3 Tax=Ditylum brightwell... [more]
A0A6V1PVC7_HETAK2.470e-4044.79Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041412Xrn1, helical domainPFAMPF17846XRN_Mcoord: 1..47
e-value: 2.9E-7
score: 29.8
NoneNo IPR availableGENE3D2.170.260.40coord: 117..227
e-value: 2.2E-11
score: 45.8
IPR040992Xrn1, D1 domainPFAMPF18332XRN1_D1coord: 106..219
e-value: 5.8E-15
score: 55.6
IPR0164945'-3' exoribonuclease 1PANTHERPTHR12341:SF75'-3' EXORIBONUCLEASE 1coord: 1..186
IPR0270735'-3' exoribonucleasePANTHERPTHR123415'->3' EXORIBONUCLEASEcoord: 1..186

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12136contigE-fasciculatus_F_contig12136:492..3604 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12136.1666.1mRNA_E-fasciculatus_F_contig12136.1666.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig12136 492..3604 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig12136.1666.1 ID=prot_E-fasciculatus_F_contig12136.1666.1|Name=mRNA_E-fasciculatus_F_contig12136.1666.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=235bp
MNGKRNPWEAVNVLPFIDAYRLRAAVKEMCPPTALSPQEAERNTRGQVVE
YYHDPFMGRKEMSCNPEIGLADIPQCTASSRVVPFSIEPGECFRPELPHD
AIIPSAGFPSLHVLTVGSVEERKVPVNCFGTPSRYETLVLELKRPPVLPP
ASALSGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKGGGGKKSKS
KTRVKVSTFTDEAAGRWRIKAAEEQVSFFLFFLL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0270735_3_exoribonuclease
IPR0164945_3_exoribonuclease_1
IPR040992XRN1_D1
IPR041412Xrn1_helical