mRNA_E-fasciculatus_F_contig12136.1666.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12136.1666.1 vs. uniprot
Match: D7FME4_ECTSI (5\'-3\' exoribonuclease 1 (Exonuclease 2) (Exonuclease II) (Exo II) (P140) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME4_ECTSI) HSP 1 Score: 434 bits (1115), Expect = 5.390e-147 Identity = 214/225 (95.11%), Postives = 219/225 (97.33%), Query Frame = 1
Query: 1 MNGKRNPWEAVNVLPFIDAYRLRAAVKEMCPPTALSPQEAERNTRGQVVEYYHDPFMGRKEMSCNPEIGLADIPQCTASSRVVPFSIEPGECFRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTPSRYETLVLELKRPPVLPPASALSGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKGGGGKKSKSKTRVKVSTFTDEAAGRWRIKAAEEQ 675
MNGKRNPWEAVNVLPFIDAYRLRAAVKE+CPPTALSPQEAERNTRGQVVEY+HD F+ RKEMSCNPEIGLADIPQCTASSR+VPFSIEPGECFRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGT SRYETLVLELKRPPVLPPASALSGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKGGGGKK K TRVKVSTFTDEAAGRWR+KAAEEQ
Sbjct: 1 MNGKRNPWEAVNVLPFIDAYRLRAAVKELCPPTALSPQEAERNTRGQVVEYFHDAFVSRKEMSCNPEIGLADIPQCTASSRIVPFSIEPGECFRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTASRYETLVLELKRPPVLPPASALSGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKGGGGKKRK--TRVKVSTFTDEAAGRWRLKAAEEQ 223
BLAST of mRNA_E-fasciculatus_F_contig12136.1666.1 vs. uniprot
Match: A0A835Z4G8_9STRA (XRN 5'-3' exonuclease N-terminus-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4G8_9STRA) HSP 1 Score: 190 bits (482), Expect = 8.920e-52 Identity = 93/174 (53.45%), Postives = 121/174 (69.54%), Query Frame = 1
Query: 1 MNGKRNPWEAVNVLPFIDAYRLRAAVKEMCPPTALSPQEAERNTRGQVVEYYHDPFMGRKEMSCNPEIGLADIPQCTASSRVVPFSIEPGECFRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTPSRYETLVLELKRPPVLPPASALSGKVLGRSAYLNWPLMHEAQ 522
MNGKRNPWEAVN+LPFIDA RL AAV E CP L+P+E +RNT G V+EY + +SCNPEIGL+DI QC + + +P+SIE F LP + IP AGFPSL+VL + E + + +N FG+ SRY T+VL L+RP LP A L+ +V+GRS ++NWPL+HEA+
Sbjct: 547 MNGKRNPWEAVNLLPFIDASRLFAAVHERCPVQLLTPEERKRNTYGAVLEYTYSEHATGTVVSCNPEIGLSDIRQCVSEEKELPWSIESHTSFTSALPLGSTIPLAGFPSLNVLPIEQAEAKPIKLNVFGSESRYSTMVLTLRRPRGLPSAEQLAPRVIGRSVFVNWPLLHEAK 720
BLAST of mRNA_E-fasciculatus_F_contig12136.1666.1 vs. uniprot
Match: A0A7S2PS12_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PS12_9STRA) HSP 1 Score: 177 bits (450), Expect = 1.930e-47 Identity = 91/218 (41.74%), Postives = 130/218 (59.63%), Query Frame = 1
Query: 1 MNGKRNPWEAVNVLPFIDAYRLRAAVKEMCPPTALSPQEAERNTRGQVVEYYHDPFMGRKEMSCNPEIGLADIPQCTASSRVVPFSIEPGECFRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTPSRYETLVLELKRPPVLPPASALSGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKGGGGKKSKSKTRVKVSTFTDEAAGRWR 654
MNGK+NPWE VN+LPFID L+ +K +CP ++L+ +E RN RGQV Y +D SCN EIGL DI C + +++ CF+PE+ IP GFPSL+VL + + E + VNCFG+ S+Y T+VL L++ P LP +AL+ +VLG+ ++NWP+MHEA+VV ISD E R+ K ++TD+ + RW+
Sbjct: 307 MNGKKNPWEGVNLLPFIDVALLKETIKNLCPDSSLTAEEFRRNKRGQVFLYSYDLTCSETVPSCNREIGLPDIHSCHSHVKMLDAVDRTDLCFKPEVIPGTKIPYPGFPSLNVLPICNTELTAIGVNCFGSSSKYSTMVLHLQKLPQLPAVAALAPRVLGQILFINWPMMHEAKVVAISDSTTEIRVN---------------GKTKSYTDKESERWQ 509
BLAST of mRNA_E-fasciculatus_F_contig12136.1666.1 vs. uniprot
Match: K0STL9_THAOC (5'-3' exoribonuclease 1 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0STL9_THAOC) HSP 1 Score: 169 bits (428), Expect = 1.760e-44 Identity = 86/187 (45.99%), Postives = 114/187 (60.96%), Query Frame = 1
Query: 1 MNGKRNPWEAVNVLPFIDAYRLRAAVKEMCPPTALSPQEAERNTRGQVVEYYHDPFMGRKEMSCNPEIGLADIPQCTASSRVVPFSIEPGECFRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTPSRYETLVLELKRPPVLPPASALSGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRL 561
MNGKRNPWE VN+LPFIDA RL+ A+K+ CP L+ +E RN GQV Y +D SCN +IGL +I +C + + S E F PEL IP GFPSL+VL + VE R +NCFG S+Y +L + P LP A L+ ++G+S Y+NWP+MHEA+VV ++D K E R+
Sbjct: 619 MNGKRNPWEGVNILPFIDANRLKDAIKDNCPDRLLTAEERNRNRVGQVFCYSYDEACNDTIPSCNRDIGLPNIEKCHSRVITIDNSSESTVSFSPELIPGTKIPYPGFPSLNVLPIERVELRNAGLNCFGFASKYPNTILTMHTLPQLPSAEQLAANLIGKSIYVNWPMMHEAKVVAVTDSKSEVRM 805
BLAST of mRNA_E-fasciculatus_F_contig12136.1666.1 vs. uniprot
Match: A0A7S1UYY6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UYY6_9STRA) HSP 1 Score: 168 bits (426), Expect = 2.130e-44 Identity = 86/192 (44.79%), Postives = 114/192 (59.38%), Query Frame = 1
Query: 1 MNGKRNPWEAVNVLPFIDAYRLRAAVKEMCPPTALSPQEAERNTRGQVVEYYHDPFMGRKEMSCNPEIGLADIPQCTASSRVVPFSIEPGECFRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTPSRYETLVLELKRPPVLPPASALSGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKG 576
MNGKRNPWE VN+LPFID L+ + P + L+ E +RN+RG V Y HDP S N IGL DI +C + + CF+PEL +P GFPS++VL + S E K +NCFG+ S+Y ++L L + P +PP L+G +LG S Y+NWP+MHEA+VV +SD E RL VKG
Sbjct: 10 MNGKRNPWEGVNLLPFIDVKLLKQTIATQVPNSTLTNDERKRNSRGVVFMYEHDPTANETIPSPNTSIGLIDIQRCHSKIEEIDEPDRLDICFKPELVPGTKLPYPGFPSMNVLPIASFELTKTGLNCFGSASKYPNMILTLHQLPQMPPVEQLAGNILGHSLYINWPMMHEARVVAVSDAVSEARL--VKG 199
BLAST of mRNA_E-fasciculatus_F_contig12136.1666.1 vs. uniprot
Match: A0A1Z5JKV0_FISSO (5'-3' exoribonuclease 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKV0_FISSO) HSP 1 Score: 168 bits (426), Expect = 3.250e-44 Identity = 92/224 (41.07%), Postives = 126/224 (56.25%), Query Frame = 1
Query: 1 MNGKRNPWEAVNVLPFIDAYRLRAAVKEMCPPTALSPQEAERNTRGQVVEYYHDPFMGRKEMSCNPEIGLADIPQCTASSRVVPFSIEPGEC-FRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTPSRYETLVLELKRPPVLPPASALSGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKGGGGKKSKSKTRVKVSTFTDEAAGRWRIKAAE 669
MNGK+NPWE VN+LPFID L++ V++ CP + LS E RN+ G + Y HDP S NP IGL DI C ++ V+ F P F P+L +P GFPSL+VL + S+ K +NCFG PS+Y +L L P L P L+ +LG+S ++NWP+MHEA+V+G+S E E ++ GK+ KVS F A +WR + E
Sbjct: 551 MNGKKNPWEGVNLLPFIDIALLKSTVEKFCPDSKLSTAELVRNSMGTIYCYKHDPTSIETVTSPNPSIGLPDISVCHSTISVIEFDEGPSTSKFEPKLVSGTQLPYPGFPSLNVLPIASIALTKAGLNCFGVPSKYLNTILHLTELPELAPIEQLAESLLGKSVFVNWPMMHEAKVIGLSSESREIKIL-----NGKR-------KVSEFGKVEADKWRTDSME 762
BLAST of mRNA_E-fasciculatus_F_contig12136.1666.1 vs. uniprot
Match: A0A6H5KVU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU6_9PHAE) HSP 1 Score: 160 bits (404), Expect = 2.630e-41 Identity = 83/92 (90.22%), Postives = 86/92 (93.48%), Query Frame = 1
Query: 400 RYETLVLELKRPPVLPPASALSGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKGGGGKKSKSKTRVKVSTFTDEAAGRWRIKAAEEQ 675
RY TLVL LKRPPVLPPASAL+GKVLGRSAYLNWPLMHEAQVVGISDEKEEY LEEVKGGGGKK K TRVKV+TFTDEAAGRWR+KAAEEQ
Sbjct: 2 RYATLVLALKRPPVLPPASALAGKVLGRSAYLNWPLMHEAQVVGISDEKEEYLLEEVKGGGGKKLK--TRVKVNTFTDEAAGRWRLKAAEEQ 91
BLAST of mRNA_E-fasciculatus_F_contig12136.1666.1 vs. uniprot
Match: A0A7S2PSP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PSP2_9STRA) HSP 1 Score: 160 bits (404), Expect = 2.670e-41 Identity = 86/203 (42.36%), Postives = 118/203 (58.13%), Query Frame = 1
Query: 1 MNGKRNPWEAVNVLPFIDAYRLRAAVKEMCPPTALSPQEAERNTRGQVVEYYHDPFMGRKEMSCNPEIGLADIPQCTASSRVVPFSIEPGECFRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTPSRYETLVLELKRPPVLPPASALSGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKGGGGKKSKSKTR 609
MNGKRNPWE VN+LPFID L+ + + CP +AL+ E RN G+V Y +D + SCN +IGL +I +C + ++ F+PEL IP GFPSL+VL + VE R VNCFG PS+Y ++L + P +P A L+ ++GR+ ++NWP+MHEA+VV +SD E R K KSKTR
Sbjct: 567 MNGKRNPWEGVNILPFIDGNLLKQTIAKHCPDSALTADERHRNRVGKVYCYTYDAAVNDTVPSCNRDIGLPNIVKCNSRVDIIENLSVSNISFKPELVPGTKIPYPGFPSLNVLPIEHVELRNAGVNCFGFPSKYPNMILTMHTLPQMPGAVQLAENLIGRNIFVNWPMMHEAKVVAVSDSTCEVRKP--------KGKSKTR 761
BLAST of mRNA_E-fasciculatus_F_contig12136.1666.1 vs. uniprot
Match: A0A7S4RC29_9STRA (5'-3' exoribonuclease 1 n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RC29_9STRA) HSP 1 Score: 157 bits (398), Expect = 1.840e-40 Identity = 89/221 (40.27%), Postives = 121/221 (54.75%), Query Frame = 1
Query: 1 MNGKRNPWEAVNVLPFIDAYRLRAAVKEMCPPTALSPQEAERNTRGQVVEYYHDPFMGRKEMSCNPEIGLADIPQCTASSRVVPFSIEPGECFRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTPSRYETLVLELKRPPVLPPASALSGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLEEVKGGGGKKSKSKTRVKVSTFTDEAAGRWRIKA 663
MNGKRNPWE VN+LPFID + L++++ + CP L+ E RN G+V Y DP S N +IGL DI +C + + + FRP L IP GFPSL+VL + S+E V +N FG PS+Y T +L LK LP A+ L+ LG+S ++NWP+MHE++VV +SD E R K K + KV FT RW ++
Sbjct: 571 MNGKRNPWEGVNILPFIDVHLLKSSISKYCPDEVLTADERNRNRLGKVYLYTFDPASNDMVPSFNKDIGLPDIQKCNSRVDIFEENDSTDISFRPTLVPGTQIPYPGFPSLNVLPLVSIELIPVGLNIFGMPSKYATTMLTLKPMGTLPAANDLADHFLGKSLFINWPMMHESRVVAVSDAVCEVR------------KVKKKKKVRWFTPPETERWETES 779
BLAST of mRNA_E-fasciculatus_F_contig12136.1666.1 vs. uniprot
Match: A0A6V1PVC7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PVC7_HETAK) HSP 1 Score: 157 bits (397), Expect = 2.470e-40 Identity = 86/192 (44.79%), Postives = 113/192 (58.85%), Query Frame = 1
Query: 4 NGKRNPWEAVNVLPFIDAYRLRAAVKEMCPPTALSPQEAERNTRGQVVEYYHDPFMGRKEMSCNPEIGLADIPQCTASSRVVPFSIEPGECFRPELPHDAI-----IPSAGFPSLHVLTVGSVEERKVPVNCFGTPSRYETLVLELKRPPVLPPASALSGKVLGRSAYLNWPLMHEAQVVGISDEKEEYRLE 564
NGKRNPWEAVN+LPFIDA R+RAAV CP L+ +E RN G V+ Y+HDP SCNPEIGL D+ +C +S +V E H A+ +P G+PSL L V + +NCFG+ SRY+TLVL+L P +P A + ++LGR+ ++NWP +HEA VVG D+ R E
Sbjct: 425 NGKRNPWEAVNLLPFIDADRMRAAVAAHCPDRLLTEEERRRNRIGPVLLYHHDPANTATIPSCNPEIGLPDLLRCASS--IVELPTNAFEDVAEGTLHSALRPGVTLPLPGYPSLATLPRRGVRAEAIGLNCFGSGSRYQTLVLDLDPPAQVPTAEEAARELLGRTVFVNWPNLHEALVVGAQDQHTAARRE 614 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12136.1666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12136.1666.1 >prot_E-fasciculatus_F_contig12136.1666.1 ID=prot_E-fasciculatus_F_contig12136.1666.1|Name=mRNA_E-fasciculatus_F_contig12136.1666.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=235bp MNGKRNPWEAVNVLPFIDAYRLRAAVKEMCPPTALSPQEAERNTRGQVVEback to top mRNA from alignment at E-fasciculatus_F_contig12136:492..3604- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12136.1666.1 ID=mRNA_E-fasciculatus_F_contig12136.1666.1|Name=mRNA_E-fasciculatus_F_contig12136.1666.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3113bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12136:492..3604- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12136:492..3604- >mRNA_E-fasciculatus_F_contig12136.1666.1 ID=mRNA_E-fasciculatus_F_contig12136.1666.1|Name=mRNA_E-fasciculatus_F_contig12136.1666.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1410bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12136:492..3604- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |