mRNA_E-fasciculatus_F_contig12135.1665.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12135.1665.1
Unique NamemRNA_E-fasciculatus_F_contig12135.1665.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12135.1665.1 vs. uniprot
Match: D8LL29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL29_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 6.170e-37
Identity = 90/109 (82.57%), Postives = 92/109 (84.40%), Query Frame = 1 
Query:    1 MGLSLKQQADTVASAETARFEAKEAEIKKASKKAGDAEAPTPDKXXXXXXXXXXXXKNPEARA-----RRKELGKVKSTLGRLQRRVDGFWYSKFPFAGASGFRKRVLL 312
            MGLSLKQQADTVASAETARFEAKEA+IKK S+KAGDAEAPT   XXXXXXXXXXXX            RRKEL KVKSTLGRLQRRVDGFWYSKFPFAGASGFRKRVLL
Sbjct:    1 MGLSLKQQADTVASAETARFEAKEADIKKTSQKAGDAEAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXRRKELSKVKSTLGRLQRRVDGFWYSKFPFAGASGFRKRVLL 109
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BLAST of mRNA_E-fasciculatus_F_contig12135.1665.1 vs. uniprot
Match: A0A6H5KWU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU5_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 9.550e-33
Identity = 91/114 (79.82%), Postives = 92/114 (80.70%), Query Frame = 1 
Query:    1 MGLSLKQQADTVASAETARFEAKEAEIKKASKKAGDAEAPTPDKXXXXXXXXXXXXKNPEARA----------RRKELGKVKSTLGRLQRRVDGFWYSKFPFAGASGFRKRVLL 312
            MGLSLKQQADTVAS ETARFEAKEAEIKKAS+KAGDAEAPT   XXXXXXXXXXXX                 RRKEL KVKSTLGRLQRRVDGFWYSKFPFAGASGFRKRVLL
Sbjct:  367 MGLSLKQQADTVASTETARFEAKEAEIKKASQKAGDAEAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRKELSKVKSTLGRLQRRVDGFWYSKFPFAGASGFRKRVLL 480
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12135.1665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL29_ECTSI6.170e-3782.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWU5_9PHAE9.550e-3379.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12135contigE-fasciculatus_F_contig12135:656..1423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_000890.1
Exons2
Model size312
Cds size312
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927723.903136-CDS-E-fasciculatus_F_contig12135:655..7541622927723.903136-CDS-E-fasciculatus_F_contig12135:655..754Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12135 656..754 +
1695995666.4859574-CDS-E-fasciculatus_F_contig12135:655..7541695995666.4859574-CDS-E-fasciculatus_F_contig12135:655..754Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12135 656..754 +
1622927723.925456-CDS-E-fasciculatus_F_contig12135:1210..14231622927723.925456-CDS-E-fasciculatus_F_contig12135:1210..1423Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12135 1211..1423 +
1695995666.4966607-CDS-E-fasciculatus_F_contig12135:1210..14231695995666.4966607-CDS-E-fasciculatus_F_contig12135:1210..1423Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12135 1211..1423 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12135.1665.1prot_E-fasciculatus_F_contig12135.1665.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12135 656..1423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12135.1665.1

>prot_E-fasciculatus_F_contig12135.1665.1 ID=prot_E-fasciculatus_F_contig12135.1665.1|Name=mRNA_E-fasciculatus_F_contig12135.1665.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=104bp
MGLSLKQQADTVASAETARFEAKEAEIKKASKKAGDAEAPTPDKGKGNSS
KAKKTKKNPEARARRKELGKVKSTLGRLQRRVDGFWYSKFPFAGASGFRK
RVLL
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mRNA from alignment at E-fasciculatus_F_contig12135:656..1423+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12135.1665.1 ID=mRNA_E-fasciculatus_F_contig12135.1665.1|Name=mRNA_E-fasciculatus_F_contig12135.1665.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=768bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12135:656..1423+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGCTGAGCCTGAAGCAGCAAGCCGACACCGTCGCCTCCGCTGAAAC
CGCCCGTTTCGAGGCTAAGGAGGCGGAGATCAAGAAAGCCTCAAAAAAGG
TAGATACTTGCCACTAAACACAGGCGGTATTGTCAAACCTTGTGCTATTC
GATGTCGTGGCGGCGACTTAGATTGGTAAATGCACCCGCGGAAACATGGG
GCTGTGCGGTGATGTAGAACACGCGAGTACCGGGAGGATCTGTCCGATGG
CATCGTCGATCCTCTTCTTTTCTTTTTTTTCGGGACAACCAAGAATGGTT
TGGCCCGACATGACATGACATGGCCTCAAGTCCCCGCCGTTGTTTCGTGC
CCAGGCAGTTCAAGAAGCGGTTGTAGCATACGCGGTCGATGCTAATGGTA
CAACACACAGACCGTTGTTTCATTGCCTGTTAGCGCGGTAGATGCTACTA
TTAAAAATACACACATACACGTGCACGCGCGCATCCATGCGCCACCAGCG
TCCGTACAACAACCGCCTCCGAAGCCTCAGAAATTTCTCGGAAAATTATG
ACCAGGCCGGAGACGCCGAGGCTCCCACCCCGGACAAGGGCAAAGGCAAC
AGCAGCAAGGCCAAGAAGACGAAGAAGAACCCCGAGGCGCGCGCGCGGCG
CAAGGAGCTGGGCAAGGTCAAGTCTACGTTGGGCCGCCTGCAACGCCGCG
TGGACGGGTTCTGGTACTCCAAGTTCCCCTTCGCGGGGGCCAGCGGGTTC
CGCAAGCGCGTGTTGCTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12135:656..1423+

>mRNA_E-fasciculatus_F_contig12135.1665.1 ID=mRNA_E-fasciculatus_F_contig12135.1665.1|Name=mRNA_E-fasciculatus_F_contig12135.1665.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=624bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12135:656..1423+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGCTGAGCCTGAAGCAGCAAGCCGACACCGTCGCCTCCGCTGAAAC
CGCCCGTTTCGAGGCTAAGGAGGCGGAGATCAAGAAAGCCTCAAAAAAGA
TGGGGCTGAGCCTGAAGCAGCAAGCCGACACCGTCGCCTCCGCTGAAACC
GCCCGTTTCGAGGCTAAGGAGGCGGAGATCAAGAAAGCCTCAAAAAAGGC
CGGAGACGCCGAGGCTCCCACCCCGGACAAGGGCAAAGGCAACAGCAGCA
AGGCCAAGAAGACGAAGAAGAACCCCGAGGCGCGCGCGCGGCGCAAGGAG
CTGGGCAAGGTCAAGTCTACGTTGGGCCGCCTGCAACGCCGCGTGGACGG
GTTCTGGTACTCCAAGTTCCCCTTCGCGGGGGCCAGCGGGTTCCGCAAGC
GCGTGTTGCTGGCCGGAGACGCCGAGGCTCCCACCCCGGACAAGGGCAAA
GGCAACAGCAGCAAGGCCAAGAAGACGAAGAAGAACCCCGAGGCGCGCGC
GCGGCGCAAGGAGCTGGGCAAGGTCAAGTCTACGTTGGGCCGCCTGCAAC
GCCGCGTGGACGGGTTCTGGTACTCCAAGTTCCCCTTCGCGGGGGCCAGC
GGGTTCCGCAAGCGCGTGTTGCTG
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