mRNA_E-fasciculatus_F_contig12130.1660.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12130.1660.1
Unique NamemRNA_E-fasciculatus_F_contig12130.1660.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12130.1660.1 vs. uniprot
Match: D7G1F0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1F0_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 4.250e-39
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 ICRQGFVDPIVTNCGHYFCERCAQEHYKTNPRCAACGKQTQGVFNAAKKLTEKLRKKGMVTRKEQA 198
            ICRQGFVDPIVTNCGHYFCERCAQEHYKTNPRCAACGKQTQGVFNAAKKLTEKLRKKGMVTRKEQA
Sbjct:  296 ICRQGFVDPIVTNCGHYFCERCAQEHYKTNPRCAACGKQTQGVFNAAKKLTEKLRKKGMVTRKEQA 361
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BLAST of mRNA_E-fasciculatus_F_contig12130.1660.1 vs. uniprot
Match: A0A836CP80_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP80_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.140e-20
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 ICRQGFVDPIVTNCGHYFCERCAQEHYKTNPRCAACGKQTQGVFNAAKKLTEKLRKKGMV 180
            ICR+ F DP+VTNCGH+FCE CA ++YK + RCAACGKQT GVFN A++L E + KKG+V
Sbjct:  274 ICREAFRDPVVTNCGHHFCEACAMDNYKRSTRCAACGKQTGGVFNFARRLVEHMAKKGLV 333
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BLAST of mRNA_E-fasciculatus_F_contig12130.1660.1 vs. uniprot
Match: A0A6V1N7Z0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1N7Z0_HETAK)

HSP 1 Score: 87.8 bits (216), Expect = 7.220e-19
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 ICRQGFVDPIVTNCGHYFCERCAQEHYKTNPRCAACGKQTQGVFNAAKKLTEKLR 165
            ICR+ F  P+ T CGHYFCE CA EHYKT+ RCA CGKQT G+FN AKK+ E+++
Sbjct:  225 ICREDFEQPVATLCGHYFCEECALEHYKTDKRCAICGKQTSGIFNQAKKIVERMK 279
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BLAST of mRNA_E-fasciculatus_F_contig12130.1660.1 vs. uniprot
Match: A0A293MIA1_ORNER (RING finger protein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MIA1_ORNER)

HSP 1 Score: 85.1 bits (209), Expect = 8.660e-19
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 ICRQGFVDPIVTNCGHYFCERCAQEHYKTNPRCAACGKQTQGVFNAAKKLTEKLRKK 171
            ICR+ FVDP+VT C HYFCERCA + Y+   RC  CG+QT GVFN AK L ++LRKK
Sbjct:   98 ICRKSFVDPVVTKCNHYFCERCALKQYRKRTRCFVCGQQTSGVFNPAKDLIQRLRKK 154
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BLAST of mRNA_E-fasciculatus_F_contig12130.1660.1 vs. uniprot
Match: A0A367KLW3_RHIST (Pre-mRNA-splicing factor CWC24 n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367KLW3_RHIST)

HSP 1 Score: 86.3 bits (212), Expect = 2.510e-18
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 ICRQGFVDPIVTNCGHYFCERCAQEHYKTNPRCAACGKQTQGVFNAAKKLTEKLRKK 171
            ICR+ FV+P+VT C HYFCE CA  +YK +P+C ACG  TQGVFN AKK+ EKL KK
Sbjct:  233 ICREEFVNPVVTRCNHYFCEACAIRNYKESPKCFACGAPTQGVFNTAKKILEKLHKK 289
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BLAST of mRNA_E-fasciculatus_F_contig12130.1660.1 vs. uniprot
Match: A0A293MR66_ORNER (RING finger motif containing protein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MR66_ORNER)

HSP 1 Score: 85.1 bits (209), Expect = 6.710e-18
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 ICRQGFVDPIVTNCGHYFCERCAQEHYKTNPRCAACGKQTQGVFNAAKKLTEKLRKK 171
            ICR+ FVDP+VT C HYFCERCA + Y+   RC  CG+QT GVFN AK L ++LRKK
Sbjct:  226 ICRKSFVDPVVTKCNHYFCERCALKQYRKRTRCFVCGQQTSGVFNPAKDLIQRLRKK 282
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BLAST of mRNA_E-fasciculatus_F_contig12130.1660.1 vs. uniprot
Match: A0A8H7S6V7_9FUNG (Pre-mRNA-splicing factor CWC24 n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S6V7_9FUNG)

HSP 1 Score: 85.5 bits (210), Expect = 6.920e-18
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 ICRQGFVDPIVTNCGHYFCERCAQEHYKTNPRCAACGKQTQGVFNAAKKLTEKLRKK 171
            ICR+ F +P+VT C HYFCE+CA ++YK +P+C ACG  T GVFN AK + EKLRKK
Sbjct:  255 ICREEFTNPVVTKCNHYFCEKCALDNYKKSPKCYACGSPTSGVFNTAKNMLEKLRKK 311
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BLAST of mRNA_E-fasciculatus_F_contig12130.1660.1 vs. uniprot
Match: A0A0B7MVZ9_9FUNG (Pre-mRNA-splicing factor CWC24 n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7MVZ9_9FUNG)

HSP 1 Score: 84.7 bits (208), Expect = 1.030e-17
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 ICRQGFVDPIVTNCGHYFCERCAQEHYKTNPRCAACGKQTQGVFNAAKKLTEKLRKK 171
            ICRQ F DP+VT CGHYFCE CA ++Y+ +P+C ACG  TQGVFN AKK+  KL +K
Sbjct:  244 ICRQEFTDPVVTRCGHYFCETCAIKNYQKSPKCFACGAPTQGVFNTAKKMLAKLAEK 300
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BLAST of mRNA_E-fasciculatus_F_contig12130.1660.1 vs. uniprot
Match: A0A8J8VWV4_9EURO (Pre-mRNA-splicing factor CWC24 n=1 Tax=Penicillium sp. RFL-2021a TaxID=2839758 RepID=A0A8J8VWV4_9EURO)

HSP 1 Score: 84.7 bits (208), Expect = 1.080e-17
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:    1 ICRQGFVDPIVTNCGHYFCERCAQEHYKTNPRCAACGKQTQGVFNAAKKLTEKLRKKGMVTRKEQ 195
            ICR+ + +PI+T CGHYFCE CA + Y+ NP CAACG  T GVFN AKKL   L+KK    RKE+
Sbjct:  251 ICRKPYQNPIITKCGHYFCESCALQRYRKNPSCAACGAGTGGVFNTAKKLNTLLKKKREKARKER 315
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BLAST of mRNA_E-fasciculatus_F_contig12130.1660.1 vs. uniprot
Match: A0A8H7R028_9FUNG (Pre-mRNA-splicing factor CWC24 n=1 Tax=Mucor plumbeus TaxID=97098 RepID=A0A8H7R028_9FUNG)

HSP 1 Score: 84.7 bits (208), Expect = 1.110e-17
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 ICRQGFVDPIVTNCGHYFCERCAQEHYKTNPRCAACGKQTQGVFNAAKKLTEKLRKK 171
            ICRQ F DP+VT CGHYFCE CA ++Y+ +P+C ACG  TQGVFN AKK+  KL +K
Sbjct:  251 ICRQEFTDPVVTRCGHYFCETCAIKNYQKSPKCFACGAPTQGVFNTAKKMLAKLAEK 307
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12130.1660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1F0_ECTSI4.250e-39100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CP80_9STRA2.140e-2065.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V1N7Z0_HETAK7.220e-1963.64Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A293MIA1_ORNER8.660e-1963.16RING finger protein (Fragment) n=1 Tax=Ornithodoro... [more]
A0A367KLW3_RHIST2.510e-1864.91Pre-mRNA-splicing factor CWC24 n=1 Tax=Rhizopus st... [more]
A0A293MR66_ORNER6.710e-1863.16RING finger motif containing protein (Fragment) n=... [more]
A0A8H7S6V7_9FUNG6.920e-1861.40Pre-mRNA-splicing factor CWC24 n=1 Tax=Mucor circi... [more]
A0A0B7MVZ9_9FUNG1.030e-1763.16Pre-mRNA-splicing factor CWC24 n=1 Tax=Parasitella... [more]
A0A8J8VWV4_9EURO1.080e-1758.46Pre-mRNA-splicing factor CWC24 n=1 Tax=Penicillium... [more]
A0A8H7R028_9FUNG1.110e-1763.16Pre-mRNA-splicing factor CWC24 n=1 Tax=Mucor plumb... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12130contigE-fasciculatus_F_contig12130:2..1017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.5
Seed ortholog evalue8.7e-32
Seed eggNOG ortholog2880.D7G1F0
Preferred nameRNF113A
KEGG koko:K03661,ko:K13127,ko:K15696
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04142,ko04145,ko04721,ko05110,ko05120,ko05152,ko05323,map00190,map01100,map04142,map04145,map04721,map05110,map05120,map05152,map05323
KEGG ModuleM00160
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008270,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0016020,GO:0016070,GO:0016071,GO:0016074,GO:0016567,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0022008,GO:0030154,GO:0030182,GO:0031323,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0034247,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0043144,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043484,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046872,GO:0046914,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070647,GO:0071704,GO:0080090,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1990904
EggNOG free text desc.snoRNA splicing
EggNOG OGsCOG5152@1,KOG1813@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927723.3746886-CDS-E-fasciculatus_F_contig12130:1..1181622927723.3746886-CDS-E-fasciculatus_F_contig12130:1..118Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12130 2..118 +
1695995666.334975-CDS-E-fasciculatus_F_contig12130:1..1181695995666.334975-CDS-E-fasciculatus_F_contig12130:1..118Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12130 2..118 +
1622927723.390471-CDS-E-fasciculatus_F_contig12130:888..10171622927723.390471-CDS-E-fasciculatus_F_contig12130:888..1017Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12130 889..1017 +
1695995666.347073-CDS-E-fasciculatus_F_contig12130:888..10171695995666.347073-CDS-E-fasciculatus_F_contig12130:888..1017Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12130 889..1017 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12130.1660.1prot_E-fasciculatus_F_contig12130.1660.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12130 2..1017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12130.1660.1

>prot_E-fasciculatus_F_contig12130.1660.1 ID=prot_E-fasciculatus_F_contig12130.1660.1|Name=mRNA_E-fasciculatus_F_contig12130.1660.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=82bp
ICRQGFVDPIVTNCGHYFCERCAQEHYKTNPRCAACGKQTQGVFNAAKKL
TEKLRKKGMVTRKEQAGGGASAGADDGGGDSD
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mRNA from alignment at E-fasciculatus_F_contig12130:2..1017+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12130.1660.1 ID=mRNA_E-fasciculatus_F_contig12130.1660.1|Name=mRNA_E-fasciculatus_F_contig12130.1660.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1016bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12130:2..1017+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATCTGCAGGCAGGGGTTCGTTGACCCGATAGTGACGAATTGCGGTCACTA
CTTCTGTGAGCGGTGCGCCCAGGAGCACTACAAGACCAACCCCCGCTGCG
CCGCGTGTGGAAAACAGGTACGCGCCCGTGCACGTCATCGCTTCATTTGA
CTATCGTGGGAGATCTCATTTTGGCCTGTTTGGCACTGGTCTGTCTTGAT
CTGTTGGACAAGATTTGTGTCTTGCAGACTACGTAGCAGATTCCCACGAG
GCTGGGTCGAACGTGCGGTCTGTAGTGTTGCTTGTCTTGGACTGTTGGAT
CGTCGTTGAAGAGTCCATCTAGCTTTACGTCGCCGTGAACCGCGGACCTG
GTGTACGACGTAAGCTGCCTCTTGAGAAGTAGTGCTTGATGTGTTGCTCC
CATCAGTTCTGCGTTCCTTAGCTAACCGATCACGGTAGGGTTACACTTCA
GAATTACCTCTCACGAGACATGCAGATTGCGCACCTTGTAGCTCTACAGG
GTGATATTGTTGCATATTGCATTTAATATATCCATATGGCGCTCGGGAGT
TTGTTGTGGGTGCGGTGGCAAACTCTGGCTTTCCCCTATGGATACGGGGA
TAGTCTACAGGTCTGGGATTGCTGAATGCTTTGGTGGACGTTGGTCTGGG
CAACGCCATTCCTCTCATCAGTTCAGTAACCGTCTGAAACCGAGGATGTC
TCGCCAACCTCCTGTCTGTATTGTTTCGGTTTTCTGTGGCTTGACTACAA
GGTAAAAAACAGCTTTGCTCCTAGGTTTTGGGCGATCTGCTACAATAGTC
TCTCGCATTGGGTGCACCAATGAACCTATTCTCCTTGTACCCAACGACTG
CACGCGTGTGCCAAACGGTGCTTATTCTTCCATGCAGACCCAGGGCGTGT
TCAATGCGGCCAAAAAGCTGACGGAAAAGCTTCGCAAGAAAGGCATGGTG
ACGAGAAAAGAACAAGCTGGCGGGGGTGCGTCAGCTGGTGCCGACGACGG
GGGGGGTGACAGCGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12130:2..1017+

>mRNA_E-fasciculatus_F_contig12130.1660.1 ID=mRNA_E-fasciculatus_F_contig12130.1660.1|Name=mRNA_E-fasciculatus_F_contig12130.1660.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=492bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12130:2..1017+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATCTGCAGGCAGGGGTTCGTTGACCCGATAGTGACGAATTGCGGTCACTA
CTTCTGTGAGCGGTGCGCCCAGGAGCACTACAAGACCAACCCCCGCTGCG
CCGCGTGTGGAAAACAGATCTGCAGGCAGGGGTTCGTTGACCCGATAGTG
ACGAATTGCGGTCACTACTTCTGTGAGCGGTGCGCCCAGGAGCACTACAA
GACCAACCCCCGCTGCGCCGCGTGTGGAAAACAGACCCAGGGCGTGTTCA
ATGCGGCCAAAAAGCTGACGGAAAAGCTTCGCAAGAAAGGCATGGTGACG
AGAAAAGAACAAGCTGGCGGGGGTGCGTCAGCTGGTGCCGACGACGGGGG
GGGTGACAGCGACACCCAGGGCGTGTTCAATGCGGCCAAAAAGCTGACGG
AAAAGCTTCGCAAGAAAGGCATGGTGACGAGAAAAGAACAAGCTGGCGGG
GGTGCGTCAGCTGGTGCCGACGACGGGGGGGGTGACAGCGAC
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