prot_E-fasciculatus_F_contig12126.1657.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig12126.1657.1
Unique Nameprot_E-fasciculatus_F_contig12126.1657.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length262
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12126.1657.1 vs. uniprot
Match: D8LCM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCM2_ECTSI)

HSP 1 Score: 338 bits (868), Expect = 3.560e-112
Identity = 223/263 (84.79%), Postives = 233/263 (88.59%), Query Frame = 0 
Query:    1 TDDSEAVSAHGEFIFGGALIALELLVLAYCNHAHRKVIARMGVVGGFKGIGAVLEELWVEPKHHMGEETSAIDVKDLLLAAPVKAPTLEQLTSEASGHGASQAQVNFTSGRGSSSSSSVSGMRRSNGSTGSITGLANQEQPASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSNDAAFTPVAAAPGGG-KKVEAGAGGV--DAAGVDDDPLWLPPGRVQNCSMGGDPFILATLRPPQRVVDGLPDLLKGFEIK 260
            TD+SEAVSAHGEF+FG AL+ LELLVLAYCNHAHRKVIARMGVVGGFKGIGAVL+ELWVEPKHHMGEET+AIDV+DLLLAAPVKAPTLEQLTSEASG+GASQAQVNF S RGS SSSSVSGM+RSNGSTGSITGLANQE  ASSXX     XXXXXXXXXXXXXXXXXXXXXXXXXXXXX     A+FTPVAA P GG KKVEAG  G   DAA V  DPLWLPPGRVQNCSMGGDPFILATLRPPQRVVD LPD+LKGF IK
Sbjct:  170 TDESEAVSAHGEFVFGAALVVLELLVLAYCNHAHRKVIARMGVVGGFKGIGAVLQELWVEPKHHMGEETAAIDVRDLLLAAPVKAPTLEQLTSEASGNGASQAQVNFKSVRGS-SSSSVSGMKRSNGSTGSITGLANQEPSASSXXATVNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----ASFTPVAATPAGGEKKVEAGGRGAGEDAAAVGGDPLWLPPGRVQNCSMGGDPFILATLRPPQRVVDSLPDVLKGFAIK 426
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12126.1657.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCM2_ECTSI3.560e-11284.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 32..261
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 13..31
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..12
NoneNo IPR availableTMHMMTMhelixcoord: 10..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12126contigE-fasciculatus_F_contig12126:1018..3948 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12126.1657.1mRNA_E-fasciculatus_F_contig12126.1657.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig12126 1018..3948 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig12126.1657.1 ID=prot_E-fasciculatus_F_contig12126.1657.1|Name=mRNA_E-fasciculatus_F_contig12126.1657.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=262bp
TDDSEAVSAHGEFIFGGALIALELLVLAYCNHAHRKVIARMGVVGGFKGI
GAVLEELWVEPKHHMGEETSAIDVKDLLLAAPVKAPTLEQLTSEASGHGA
SQAQVNFTSGRGSSSSSSVSGMRRSNGSTGSITGLANQEQPASSSTATAP
PATTTTTTAAPAPAPAAPANDNNNNNNNNNNKSNDAAFTPVAAAPGGGKK
VEAGAGGVDAAGVDDDPLWLPPGRVQNCSMGGDPFILATLRPPQRVVDGL
PDLLKGFEIKV*
back to top