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Homology
BLAST of mRNA_E-fasciculatus_F_contig12126.1657.1 vs. uniprot
Match: D8LCM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCM2_ECTSI) HSP 1 Score: 338 bits (868), Expect = 3.560e-112 Identity = 223/263 (84.79%), Postives = 233/263 (88.59%), Query Frame = 1
Query: 1 TDDSEAVSAHGEFIFGGALIALELLVLAYCNHAHRKVIARMGVVGGFKGIGAVLEELWVEPKHHMGEETSAIDVKDLLLAAPVKAPTLEQLTSEASGHGASQAQVNFTSGRGSSSSSSVSGMRRSNGSTGSITGLANQEQPASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSNDAAFTPVAAAPGGG-KKVEAGAGGV--DAAGVDDDPLWLPPGRVQNCSMGGDPFILATLRPPQRVVDGLPDLLKGFEIK 780
TD+SEAVSAHGEF+FG AL+ LELLVLAYCNHAHRKVIARMGVVGGFKGIGAVL+ELWVEPKHHMGEET+AIDV+DLLLAAPVKAPTLEQLTSEASG+GASQAQVNF S RGS SSSSVSGM+RSNGSTGSITGLANQE ASSXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXX A+FTPVAA P GG KKVEAG G DAA V DPLWLPPGRVQNCSMGGDPFILATLRPPQRVVD LPD+LKGF IK
Sbjct: 170 TDESEAVSAHGEFVFGAALVVLELLVLAYCNHAHRKVIARMGVVGGFKGIGAVLQELWVEPKHHMGEETAAIDVRDLLLAAPVKAPTLEQLTSEASGNGASQAQVNFKSVRGS-SSSSVSGMKRSNGSTGSITGLANQEPSASSXXATVNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----ASFTPVAATPAGGEKKVEAGGRGAGEDAAAVGGDPLWLPPGRVQNCSMGGDPFILATLRPPQRVVDSLPDVLKGFAIK 426
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 786 |
| Cds size | 786 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12126.1657.1 >prot_E-fasciculatus_F_contig12126.1657.1 ID=prot_E-fasciculatus_F_contig12126.1657.1|Name=mRNA_E-fasciculatus_F_contig12126.1657.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=262bp
TDDSEAVSAHGEFIFGGALIALELLVLAYCNHAHRKVIARMGVVGGFKGI
GAVLEELWVEPKHHMGEETSAIDVKDLLLAAPVKAPTLEQLTSEASGHGA
SQAQVNFTSGRGSSSSSSVSGMRRSNGSTGSITGLANQEQPASSSTATAP
PATTTTTTAAPAPAPAAPANDNNNNNNNNNNKSNDAAFTPVAAAPGGGKK
VEAGAGGVDAAGVDDDPLWLPPGRVQNCSMGGDPFILATLRPPQRVVDGL
PDLLKGFEIKV* back to topmRNA from alignment at E-fasciculatus_F_contig12126:1018..3948- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig12126.1657.1 ID=mRNA_E-fasciculatus_F_contig12126.1657.1|Name=mRNA_E-fasciculatus_F_contig12126.1657.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2931bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12126:1018..3948- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACCGACGACAGCGAGGCGGTGTCGGCGCACGGAGAGTTTATATTCGGGGG
TGCGCTTATCGCCCTCGAGTTGCTGGTGCTGGCCTACTGCAACCACGCAC
ACCGGAAGGTCATCGCGAGGATGGGGGTGGTGGGCGGCTTCAAGGGCATC
GGGGCAGTGCTTGAGGTGAGGAGGGAGAGAGGGAGAGGGAAAGGGAGAGA
GAGAGAGACAGACAGACAGAGGCAAAGACGAAGACAGGCCAACAGAGACC
GGGACAGAGGCAGCAGCCGAGGGCGAGGGAGACAGACAAACGGAGATAGA
GATGGATACAGAGACTGAGACAGAGGTCAAGACAAAGACAGACAGAGACA
CGGACACAGACACAGACAGAGACACAGACACAGACACAGACAGAGAGGCA
GAGAGGAGCGGGTGGCAGAGGTGCAGTGTGATGCGCCCTCTCTCTGATCA
ATGCACAGTAATTGTGCGCGATCGAGGAGCCTTACATTTTCCCGTTTTTC
CCTCCTCCGGGGTGCTTGTGCTTGGCAGGAGCTCTGGGTAGAGCCGAAGC
ACCACATGGGCGAGGAAACGTCGGCCATCGACGTGAAGGACCTGCTGCTG
GCCGCCCCCGTAAAGGCTCCCACCCTCGAGCAGCTGACTTCTGAGGCTTC
CGGCCATGTGAGTCAAGTCCCCATTCCATCCTCTTTGTGCTGTTGTGTGT
TTCTGCGAAGGTTCCGTGGTTTACCGCATTGCGTGTGTTCGTCTCGTGTG
TCTTTCGAGGTTCCTGCATTGTGCGTGGTTGGCTTGTTGAGTGTCTTCCA
TGGTTACTACTGTGTGTGTTTGCCTCGTTTTTGTGTTTGCCTCGTTTTTG
TGTTTGTCTCGTGCGTCTTTCGAGGTCCCTGCATTGTGCGTGTTTGTCTT
GTTGAGTGTCTTCCGTGGTTACAACTGTGTGTGTCTGCCTTGTTTGTGTT
TGCCTCGTGTGTCTGCCATGGTTCCTGCATTGTGCGCATTTGTCTTGTTG
AGTGTCTTCCGTGGTTTTTCCCACGTTGCGTTTGTTTTTTCCTTGTGTGT
CTGCTCGGGCGGGGGACTGTTTCTTGCTAGGGCCCAGCGGTCGTGAGTGG
TCCCCGTGGAAGACCGCATCATCATCAGTAACTAACAGCCGTGGTACGCA
GATGGAGTGGAGATTTTGCACGTTTTTCTCATACCTGGTGCCCGATGTGA
AAGACCGGCTAGATCCCTTGGCGCCGTGCGGCGTTGCGCAGGGACCGCTG
CTGCTGCTGTGGATGACGGTGTTTATGTTTTTTGTTTTGTGTTTTTGCGT
TCCCCCTCTCAAGCGAAGGTGTTGAAAATACGTTGGTTTCACCAGCGGCG
CCTTTTTTTGATTGATTGATTACGTTCGTGTTCAAAGCGAAGATAGACCA
GCTTGCCGCTTCTTCGGCCCACTGAAGCCCCGCTGTCAGCAGAATGCCAT
CAACATCAACCTATTTCACTGTTATCCCATAACCACCACCCCCGCTGCTA
CGCCACTCACTCCCAGCCGATGTATCATGTATCACGCGTGCTCTTCATCG
CCACCTGCAACTCTACAGCCCACCTACCGTGGGCAGCGTGAAGCTAGCCT
GATTGTTCTTCCGGGTGTTGTTGTTTCCGGGATGCGTCGCTTCGCCTTTT
GATGTCGCTCCGACCCCCGCCCCCCGCCCCCCTCCCTCCTCGGCACGCCT
TTACAATTTCGATGCTCTTGTGAACAACGATAAAGCCGCAGGGCGCGTCT
CAGGCTCAGGTGAACTTCACGTCTGGGCGAGGGTCCTCCTCGTCCTCCTC
GGTCTCCGGGATGTGAGTTGTTGACTTGTTGAGTTGTCCGCCGGGGTTGA
AACAGCAGTTCGGTTCCGAAGGCTCCGCTGTGCACAGCAGCAGCAGAGGT
GTAGGCAGGTTGGGCAGGAGGACGGCAGCGCTAGAGTAGACAGGTCGGGC
GGTAGTACTTTTATTGGAGCAGCGATAACAACTAGCGAGTACCGCATTCG
CCGCCGCCGTCGCGGTGGCTTGCTCCGTTGCTGAGAGTCAGCGACGCAGG
CGCGTTTGCGTGGAAGAGGTGGAGGCGGTAGCGAGGCCGGCAGAGTCGAT
CGATGATGATTCTACCGGAAAAATGCCACTTCCACCTCCTGCTGATTTTT
ACCGTACAAGGGAAAGAAAGAGATGAAGGTACGGGGGGGGTTGCGAACCA
GATACTACTGTACCTCCCCCCAAGCTCGGAATGTTGCTTACGACCGGTCA
TCGTTATCATGATCGTTTTCATTACTACCCGTCCCCCGCACCCCGCTCCT
CAGACTTGTCTTTGGCATGAACGAAGTGCACGAACGAAGAGTGTTTTCCC
CGGGGAAATCTCGCTGTGACCTTTCGGGTCCCCTAGTCCCCTCCCGGCTC
ATACTGACTTGTGTTTCAGGCACCACAACCAGGCGCGCCTTGATGCTACT
GCTCGCTCGCTCGCTCGCTCGCTCACCGGCGCTCGCCTTTTTTTTTTATT
GTCCCCCCAGGAGACGATCGAACGGGAGCACCGGTAGCATCACGGGGCTC
GCCAACCAAGAACAGCCAGCGTCGTCGTCGACGGCCACAGCACCTCCCGC
TACCACCACCACAACGACAGCAGCACCAGCACCAGCACCAGCCGCCCCCG
CCAACGACAATAACAACAACAACAACAACAACAACAACAAGAGCAACGAT
GCGGCTTTCACTCCGGTGGCGGCGGCACCGGGCGGGGGGAAGAAAGTTGA
GGCGGGGGCGGGGGGGGTAGACGCCGCGGGTGTCGATGACGACCCCCTCT
GGCTTCCCCCGGGCAGGGTGCAGAACTGCTCCATGGGAGGCGACCCGTTC
ATCCTGGCCACGCTCAGGCCGCCGCAGAGAGTGGTCGATGGCCTTCCCGA
TCTCCTCAAGGGCTTTGAAATCAAGGTATAG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig12126:1018..3948- >mRNA_E-fasciculatus_F_contig12126.1657.1 ID=mRNA_E-fasciculatus_F_contig12126.1657.1|Name=mRNA_E-fasciculatus_F_contig12126.1657.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1572bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12126:1018..3948- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACCGACGACAGCGAGGCGGTGTCGGCGCACGGAGAGTTTATATTCGGGGG
TGCGCTTATCGCCCTCGAGTTGCTGGTGCTGGCCTACTGCAACCACGCAC
ACCGGAAGGTCATCGCGAGGATGGGGGTGGTGGGCGGCTTCAAGGGCATC
GGGGCAGTGCTTGAGACCGACGACAGCGAGGCGGTGTCGGCGCACGGAGA
GTTTATATTCGGGGGTGCGCTTATCGCCCTCGAGTTGCTGGTGCTGGCCT
ACTGCAACCACGCACACCGGAAGGTCATCGCGAGGATGGGGGTGGTGGGC
GGCTTCAAGGGCATCGGGGCAGTGCTTGAGGAGCTCTGGGTAGAGCCGAA
GCACCACATGGGCGAGGAAACGTCGGCCATCGACGTGAAGGACCTGCTGC
TGGCCGCCCCCGTAAAGGCTCCCACCCTCGAGCAGCTGACTTCTGAGGCT
TCCGGCCATGAGCTCTGGGTAGAGCCGAAGCACCACATGGGCGAGGAAAC
GTCGGCCATCGACGTGAAGGACCTGCTGCTGGCCGCCCCCGTAAAGGCTC
CCACCCTCGAGCAGCTGACTTCTGAGGCTTCCGGCCATGGCGCGTCTCAG
GCTCAGGTGAACTTCACGTCTGGGCGAGGGTCCTCCTCGTCCTCCTCGGT
CTCCGGGATGGCGCGTCTCAGGCTCAGGTGAACTTCACGTCTGGGCGAGG
GTCCTCCTCGTCCTCCTCGGTCTCCGGGATGAGACGATCGAACGGGAGCA
CCGGTAGCATCACGGGGCTCGCCAACCAAGAACAGCCAGCGTCGTCGTCG
ACGGCCACAGCACCTCCCGCTACCACCACCACAACGACAGCAGCACCAGC
ACCAGCACCAGCCGCCCCCGCCAACGACAATAACAACAACAACAACAACA
ACAACAACAAGAGCAACGATGCGGCTTTCACTCCGGTGGCGGCGGCACCG
GGCGGGGGGAAGAAAGTTGAGGCGGGGGCGGGGGGGGTAGACGCCGCGGG
TGTCGATGACGACCCCCTCTGGCTTCCCCCGGGCAGGGTGCAGAACTGCT
CCATGGGAGGCGACCCGTTCATCCTGGCCACGCTCAGGCCGCCGCAGAGA
GTGGTCGATGGCCTTCCCGATCTCCTCAAGGGCTTTGAAATCAAGGTATA
GGAGACGATCGAACGGGAGCACCGGTAGCATCACGGGGCTCGCCAACCAA
GAACAGCCAGCGTCGTCGTCGACGGCCACAGCACCTCCCGCTACCACCAC
CACAACGACAGCAGCACCAGCACCAGCACCAGCCGCCCCCGCCAACGACA
ATAACAACAACAACAACAACAACAACAACAAGAGCAACGATGCGGCTTTC
ACTCCGGTGGCGGCGGCACCGGGCGGGGGGAAGAAAGTTGAGGCGGGGGC
GGGGGGGGTAGACGCCGCGGGTGTCGATGACGACCCCCTCTGGCTTCCCC
CGGGCAGGGTGCAGAACTGCTCCATGGGAGGCGACCCGTTCATCCTGGCC
ACGCTCAGGCCGCCGCAGAGAGTGGTCGATGGCCTTCCCGATCTCCTCAA
GGGCTTTGAAATCAAGGTATAG back to top
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