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Homology
BLAST of mRNA_E-fasciculatus_F_contig12124.1656.1 vs. uniprot
Match: D7FXK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK9_ECTSI) HSP 1 Score: 75.1 bits (183), Expect = 2.030e-12 Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 1
Query: 88 ISPTNKSAFGTPPRLTRTGSASEGRSQHSPPPGPLLVHPQ 207
+SPTNKSAFGTPPR+ R+GSASEGR HSPPPGPLLVHPQ
Sbjct: 760 VSPTNKSAFGTPPRVARSGSASEGRYLHSPPPGPLLVHPQ 799
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 554 |
| Cds size | 552 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12124.1656.1 >prot_E-fasciculatus_F_contig12124.1656.1 ID=prot_E-fasciculatus_F_contig12124.1656.1|Name=mRNA_E-fasciculatus_F_contig12124.1656.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=184bp
GSYTEAAAAAVAGAAAAAAAAAAKSSSSSISPTNKSAFGTPPRLTRTGSA
SEGRSQHSPPPGPLLVHPQRRQAARQSRSGLRITTSSSGEELAEEKAGQQ
QQQQAFDRSLLPRSPTAESRQLSKEAAEARAGGWVQVELPQGAVPDAAAG
SEGGEQKAEHARNGVGGSSDFTWSKIGAFPFGQG back to topmRNA from alignment at E-fasciculatus_F_contig12124:668..2744- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig12124.1656.1 ID=mRNA_E-fasciculatus_F_contig12124.1656.1|Name=mRNA_E-fasciculatus_F_contig12124.1656.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2077bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12124:668..2744- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGAGCTACACGGAGGCGGCGGCGGCGGCGGTGGCGGGGGCGGCGGCTGC
GGCGGCTGCGGCGGCGGCGAAATCGTCATCGTCGTCGATATCGCCGACGA
ACAAGTCGGCTTTCGGAACGCCTCCTCGTTTGGTGAGTTTTAGTAGGTGC
CTTCTGCTGTGGCGTTTTGTTTCGAGGCGCCCTGGGGGGTGAGAGGTGTT
TGGCACCTCTTCTGCCCTCGGTTCAAATGCTGTGCTCGCGAGTGTTGTAC
TGTAGTGCGCTTATTCCTCGACCTATGAAAGTCAGTCCATGGGGTATGAT
GTCTTCCGTCACCGAGGGTAGGCCGCTGCTGGCGACACGGCGGCGGAAGC
GTCTAGATTGACCATTGTGTGCTCCGTCTCTAGACTTGGGGGTAGAGAGT
CTTGGTATTTTGGCTGTGCATCGGCACACGTTGTCTACCCTCTCCTCGGC
CGACGTCCTATTAGTAACTAGGCCCGTAGACTTTGTGCTGGCCTGCTGTG
CCTGCAGTCGATCCGCACTGGGTGTGTTGGTGGTGAGTGACGGGGAGTCT
CCGACGCCGTAGTGTTGACTCGGGTCTTCGGATGTAGGTGCCGTGCGTTT
CAACTCCGTTGTCCTTGCTGTTGTTCGCAGACCCGAACCGGCAGCGCGTC
TGAGGGTAGGTCTCAGCACAGCCCACCTCCGGGGCCTCTCCTTGTGCACC
CTCAGCGCCGACAAGCAGCGGTAAGAGAGAAAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAAAGATAGCATAT
AAAGGGGTAGGTTATTGAAATGATTGCTAACAGAGGTTAGAAACAGAAGT
GAAATGATTACTAACAGAGTTGAGGTGGTGGGGGAAGGCAGACAGACACA
CACACACCATGGACGTAGGAAGTTGTCTTATTTTTGCTTTCGTCGAGAAG
ATAGAACGTTATTCGTACATTTGCAGCAGTTAAACTTTGTTTTTGTTTTT
TTCTTCATGAAAACAGTTGCGTTCGACAAACACCGACTCACCGCACAGAC
ACGCATGCACACACAACGATTGGCGTGTTGTGAAAAGTAGCAACATATCG
GCTCTCGGTGCTCCCCCCGCTCCAAAGCACATGTCACCACTGAGCACATG
CCTTTGGGAAGCGATAAGAACGCATGCCCCCGGCATATCGCTCCGTCCCG
GCTTTGTAGGGATGCGAGGTCTATGGTCTAACGACTACGGCATGCATGAT
ACTGAGTACACACACACACACACACACATACCCTGTCCACCTGTCCCCCC
GGACGGTGCCCCCTGTGTCGCTCCGACGACACCCTTTGGCCGTACCAGAG
ACAAAGCCGGAGCGGGTTACGGATCACCACCTCGTCTTCCGGTGAAGAGT
TGGCGGAGGAAAAGGCGGGGCAGCAGCAGCAGCAGCAGGCCTTCGACCGA
TCGCTCCTGCCGCGGTCGCCCACCGCCGAGAGTCGACAGCTCAGCAAGGA
GGCCGCCGAGGCCCGCGCCGGGGGCTGGGTGCAGGTGGAGCTGCCGCAGG
GTGCTGTCCCTGATGCTGCTGCTGGAAGCGAGGGGGGGGAGCAGAAAGTG
AGTAACCTCTGTGTTGTCGTTTTGTGTTTTTCTTTCGATTGTGGACTTTT
TCATGTGCTGCCGTGTTGTATGCTTCTTTGAATGTGGACTAGCTTGTAGT
GCTGTCGTCTTGTGTGTTTCTTTACAGTGTAAATCGGCGGCGCTAAACCT
AACCCAACCCGGCTGACTTGGTCTTGTCGCCCTCCACGTACTGTAGGTAT
ATAGGTAGGCACACTTGGCTCCTCGGTTGGTGTGTTCGATTTTCGGTGCG
CTTCACGCCACTGTTTCTGTGCTCTTTTTCTTAGTATGCCACAGCGAATC
TATCTCTATCTACAGACGTCTTAGATAGATTAGCAATGAATCCATAGCGT
CGAGGCTATCTGTATTTTGACACAACGGTGTACGCCCCAACACAGGCGGA
GCATGCTCGGAACGGCGTCGGCGGCAGCAGCGACTTCACGTGGAGTAAGA
TCGGCGCTTTTCCTTTCGGACAAGGGG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig12124:668..2744- >mRNA_E-fasciculatus_F_contig12124.1656.1 ID=mRNA_E-fasciculatus_F_contig12124.1656.1|Name=mRNA_E-fasciculatus_F_contig12124.1656.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1104bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12124:668..2744- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGAGCTACACGGAGGCGGCGGCGGCGGCGGTGGCGGGGGCGGCGGCTGC
GGCGGCTGCGGCGGCGGCGAAATCGTCATCGTCGTCGATATCGCCGACGA
ACAAGTCGGCTTTCGGAACGCCTCCTCGTTTGGGGAGCTACACGGAGGCG
GCGGCGGCGGCGGTGGCGGGGGCGGCGGCTGCGGCGGCTGCGGCGGCGGC
GAAATCGTCATCGTCGTCGATATCGCCGACGAACAAGTCGGCTTTCGGAA
CGCCTCCTCGTTTGACCCGAACCGGCAGCGCGTCTGAGGGTAGGTCTCAG
CACAGCCCACCTCCGGGGCCTCTCCTTGTGCACCCTCAGCGCCGACAAGC
AGCGACCCGAACCGGCAGCGCGTCTGAGGGTAGGTCTCAGCACAGCCCAC
CTCCGGGGCCTCTCCTTGTGCACCCTCAGCGCCGACAAGCAGCGAGACAA
AGCCGGAGCGGGTTACGGATCACCACCTCGTCTTCCGGTGAAGAGTTGGC
GGAGGAAAAGGCGGGGCAGCAGCAGCAGCAGCAGGCCTTCGACCGATCGC
TCCTGCCGCGGTCGCCCACCGCCGAGAGTCGACAGCTCAGCAAGGAGGCC
GCCGAGGCCCGCGCCGGGGGCTGGGTGCAGGTGGAGCTGCCGCAGGGTGC
TGTCCCTGATGCTGCTGCTGGAAGCGAGGGGGGGGAGCAGAAAAGACAAA
GCCGGAGCGGGTTACGGATCACCACCTCGTCTTCCGGTGAAGAGTTGGCG
GAGGAAAAGGCGGGGCAGCAGCAGCAGCAGCAGGCCTTCGACCGATCGCT
CCTGCCGCGGTCGCCCACCGCCGAGAGTCGACAGCTCAGCAAGGAGGCCG
CCGAGGCCCGCGCCGGGGGCTGGGTGCAGGTGGAGCTGCCGCAGGGTGCT
GTCCCTGATGCTGCTGCTGGAAGCGAGGGGGGGGAGCAGAAAGCGGAGCA
TGCTCGGAACGGCGTCGGCGGCAGCAGCGACTTCACGTGGAGTAAGATCG
GCGCTTTTCCTTTCGGACAAGGGGCGGAGCATGCTCGGAACGGCGTCGGC
GGCAGCAGCGACTTCACGTGGAGTAAGATCGGCGCTTTTCCTTTCGGACA
AGGG back to top
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