mRNA_E-fasciculatus_F_contig12119.1651.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12119.1651.1
Unique NamemRNA_E-fasciculatus_F_contig12119.1651.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12119.1651.1 vs. uniprot
Match: D7FWJ6_ECTSI (Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B\' beta isoform n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWJ6_ECTSI)

HSP 1 Score: 332 bits (850), Expect = 2.850e-109
Identity = 169/173 (97.69%), Postives = 170/173 (98.27%), Query Frame = 1 
Query:    1 PVCSTPTLINGVEDTPVADPELPRRASTALSRRSTSFESSRSSDIAFIRQEFIKELPLLRDTSQHQREALFQQKLKLCTVVFDMTDPMENSRDKEVKRCTLLELVEYINSTHGQQPDDCDPDKDEPLLEEAWPHLQVVYEFLVRFVVSSEVDAKQAKQYVDQAMCLQLVDLFD 519
            P  STPTLINGVEDTPVADPELPRRASTALSRRSTSFESSRSSDIAFIR EF+KELPLLRDTSQHQREALFQQKLKLCTVVFDMTDPMENSRDKEVKRCTLLELVEYINSTHGQQPDDCDPDKDEPLLEEAWPHLQVVYEFLVRFVVSSEVDAKQAKQYVDQAMCLQLVDLFD
Sbjct:  124 PSSSTPTLINGVEDTPVADPELPRRASTALSRRSTSFESSRSSDIAFIRSEFMKELPLLRDTSQHQREALFQQKLKLCTVVFDMTDPMENSRDKEVKRCTLLELVEYINSTHGQQPDDCDPDKDEPLLEEAWPHLQVVYEFLVRFVVSSEVDAKQAKQYVDQAMCLQLVDLFD 296
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12119.1651.1 vs. uniprot
Match: A0A6S9GHG6_HETAK (Serine/threonine protein phosphatase 2A regulatory subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GHG6_HETAK)

HSP 1 Score: 152 bits (385), Expect = 2.680e-41
Identity = 79/146 (54.11%), Postives = 100/146 (68.49%), Query Frame = 1 
Query:  157 IKELPLLRDTSQHQREALFQQKLKLCTVVFDMTDPMENSRDKEVKRCTLLELVEYINSTHGQ-------------------------QPDDCDPDKDEPLLEEAWPHLQVVYEFLVRFVVSSEVDAKQAKQYVDQAMCLQLVDLFD 519
            +K+LP L+DTS  +REALFQQKL+LC++VF+  DP  + R KE+KR TLLELV+Y+N+  GQ                         Q DD DP++DEP+LE AWPHLQVVYEF +RF+VSSEV+AK AK+Y DQ  CL LV+LFD
Sbjct:    4 LKDLPALKDTSAQKREALFQQKLQLCSIVFNFDDPNADKRGKELKRQTLLELVDYVNTPAGQKIFTEALMPDVMACVSANVVRALPPQTDDYDPEEDEPVLEPAWPHLQVVYEFFLRFIVSSEVNAKVAKKYTDQKFCLALVELFD 149
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12119.1651.1 vs. uniprot
Match: A0A7S1FZL3_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FZL3_9STRA)

HSP 1 Score: 150 bits (379), Expect = 2.690e-41
Identity = 80/156 (51.28%), Postives = 102/156 (65.38%), Query Frame = 1 
Query:  127 SDIAFIRQEFIKELPLLRDTSQHQREALFQQKLKLCTVVFDMTDPMENSRDKEVKRCTLLELVEYINSTHGQQ-------------------------PDDCDPDKDEPLLEEAWPHLQVVYEFLVRFVVSSEVDAKQAKQYVDQAMCLQLVDLFD 519
            S+ A   Q+ +KELP LRD+   +RE+LF QKL+LC+VVF   DP  + R K++KR TLLELV+Y+N+  GQ+                          DD DP++DEP+LE AWPHLQV YEF +RF+VSSEV+AK AK+YVDQ  CL LVDLFD
Sbjct:   88 SNTAITNQQLLKELPALRDSPPARRESLFIQKLRLCSVVFSFDDPSSDKRGKDLKRQTLLELVDYVNTPAGQKIFTESVMQDLMACINANVVRALPPATDDFDPEEDEPVLEPAWPHLQVAYEFFLRFIVSSEVNAKVAKRYVDQRFCLALVDLFD 243
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12119.1651.1 vs. uniprot
Match: A0A7S2V448_9STRA (Serine/threonine protein phosphatase 2A regulatory subunit n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V448_9STRA)

HSP 1 Score: 153 bits (386), Expect = 3.230e-41
Identity = 79/146 (54.11%), Postives = 100/146 (68.49%), Query Frame = 1 
Query:  157 IKELPLLRDTSQHQREALFQQKLKLCTVVFDMTDPMENSRDKEVKRCTLLELVEYINSTHGQ-------------------------QPDDCDPDKDEPLLEEAWPHLQVVYEFLVRFVVSSEVDAKQAKQYVDQAMCLQLVDLFD 519
            +K+LP L+DTS  +RE LFQQKL+LC++VF+  DP  + R KE+KR TLLELV+Y+N+  GQ                         Q DD DP++DEP+LE AWPHLQVVYEF +RF+VSSEV+AK AK+YVDQ  CL LV+LFD
Sbjct:   45 LKDLPALKDTSAQKREGLFQQKLQLCSIVFNFEDPNADKRGKELKRQTLLELVDYVNTPAGQKIFTEALMPDIMACVVANICRALPPQTDDYDPEEDEPVLEPAWPHLQVVYEFFLRFIVSSEVNAKVAKKYVDQRFCLNLVELFD 190
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12119.1651.1 vs. uniprot
Match: I2CR38_NANGC (Protein phosphatase 2 (Formerly 2A), regulatory subunit B (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR38_NANGC)

HSP 1 Score: 152 bits (383), Expect = 3.070e-40
Identity = 90/186 (48.39%), Postives = 116/186 (62.37%), Query Frame = 1 
Query:   37 EDTPVADPELPRRASTALSRRSTSFESSRSSDIAFIRQEFIKELPLLRDTSQHQREALFQQKLKLCTVVFDMTDPMENSRDKEVKRCTLLELVEYINSTHGQQ-------PD------------------DCDPDKDEPLLEEAWPHLQVVYEFLVRFVVSSEVDAKQAKQYVDQAMCLQLVDLFD 519
            + TP ADP LPR   T   RRS+     +       R   +K+LPLLRDT+  +REALFQQKL+L  V+F+  DP  + R K++KR TLLELV+YIN+  GQ+       PD                  D DP++DEP+LE +WPHLQVVYEF +RF+VSSEV+AK AK+YVDQ  C  L++LFD
Sbjct:  103 DGTPRADPSLPRH--TPQRRRSSLVRHQQ-------RLAALKDLPLLRDTTASKREALFQQKLQLSAVIFNFDDPQSDKRGKDMKRQTLLELVDYINTPAGQKIFTEALMPDIMACVTANICRSLPPPTEDFDPEEDEPVLEPSWPHLQVVYEFFLRFIVSSEVNAKLAKKYVDQRFCASLIELFD 279
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12119.1651.1 vs. uniprot
Match: D0N579_PHYIT (Serine/threonine protein phosphatase 2A regulatory subunit n=38 Tax=Peronosporaceae TaxID=4777 RepID=D0N579_PHYIT)

HSP 1 Score: 150 bits (380), Expect = 3.860e-40
Identity = 76/146 (52.05%), Postives = 101/146 (69.18%), Query Frame = 1 
Query:  157 IKELPLLRDTSQHQREALFQQKLKLCTVVFDMTDPMENSRDKEVKRCTLLELVEYINSTHGQ-------------------------QPDDCDPDKDEPLLEEAWPHLQVVYEFLVRFVVSSEVDAKQAKQYVDQAMCLQLVDLFD 519
            +K+LP L+DTS  +REALFQQKL+LC+V+F+  DP  + R K++KR TLLELV+Y+N+  GQ                         Q +D DP++DEP+LE +WPHLQVVYEF +RF+VSSEV+AK AK+YVDQ  CL ++DLFD
Sbjct:   72 LKDLPHLKDTSLQRREALFQQKLELCSVIFNFDDPTSDKRGKDLKRQTLLELVDYVNNPGGQKIFTETLMPDIMAMVSLNICRALPPQTEDFDPEEDEPVLEASWPHLQVVYEFFLRFIVSSEVNAKVAKKYVDQKFCLSIIDLFD 217
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12119.1651.1 vs. uniprot
Match: A0A7S1FZ03_9STRA (Serine/threonine protein phosphatase 2A regulatory subunit n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FZ03_9STRA)

HSP 1 Score: 150 bits (379), Expect = 7.670e-40
Identity = 80/156 (51.28%), Postives = 102/156 (65.38%), Query Frame = 1 
Query:  127 SDIAFIRQEFIKELPLLRDTSQHQREALFQQKLKLCTVVFDMTDPMENSRDKEVKRCTLLELVEYINSTHGQQ-------------------------PDDCDPDKDEPLLEEAWPHLQVVYEFLVRFVVSSEVDAKQAKQYVDQAMCLQLVDLFD 519
            S+ A   Q+ +KELP LRD+   +RE+LF QKL+LC+VVF   DP  + R K++KR TLLELV+Y+N+  GQ+                          DD DP++DEP+LE AWPHLQV YEF +RF+VSSEV+AK AK+YVDQ  CL LVDLFD
Sbjct:   88 SNTAITNQQLLKELPALRDSPPARRESLFIQKLRLCSVVFSFDDPSSDKRGKDLKRQTLLELVDYVNTPAGQKIFTESVMQDLMACINANVVRALPPATDDFDPEEDEPVLEPAWPHLQVAYEFFLRFIVSSEVNAKVAKRYVDQRFCLALVDLFD 243
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12119.1651.1 vs. uniprot
Match: A0A7S0GE31_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GE31_9STRA)

HSP 1 Score: 145 bits (367), Expect = 3.410e-39
Identity = 75/146 (51.37%), Postives = 97/146 (66.44%), Query Frame = 1 
Query:  157 IKELPLLRDTSQHQREALFQQKLKLCTVVFDMTDPMENSRDKEVKRCTLLELVEYINSTHGQQ-------------------------PDDCDPDKDEPLLEEAWPHLQVVYEFLVRFVVSSEVDAKQAKQYVDQAMCLQLVDLFD 519
            +++LP LRD   ++REALF QKL+LC V+F   DP  + R K++KR TLLELV+Y+N+  GQ+                          DD DP++DEP+LE AWPHLQV YEF +RF+VSSEV+AK AK+YVDQ  CLQLV+LFD
Sbjct:   36 LRDLPALRDAPPNRREALFVQKLQLCGVIFSFDDPTSDKRGKDMKRQTLLELVDYVNTPAGQKIFTESVMSDLMKCVEANVCRALPPATDDFDPEEDEPVLEPAWPHLQVAYEFFLRFIVSSEVNAKAAKRYVDQRFCLQLVELFD 181
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12119.1651.1 vs. uniprot
Match: K3XB75_GLOUD (Serine/threonine protein phosphatase 2A regulatory subunit n=2 Tax=Pythiaceae TaxID=4782 RepID=K3XB75_GLOUD)

HSP 1 Score: 146 bits (368), Expect = 1.600e-38
Identity = 73/146 (50.00%), Postives = 100/146 (68.49%), Query Frame = 1 
Query:  157 IKELPLLRDTSQHQREALFQQKLKLCTVVFDMTDPMENSRDKEVKRCTLLELVEYINSTHGQ-------------------------QPDDCDPDKDEPLLEEAWPHLQVVYEFLVRFVVSSEVDAKQAKQYVDQAMCLQLVDLFD 519
            +K+LP L+DTS  +REALFQQKL+LC+V+F+  DP  + R K++KR TLLELV+Y+N+  GQ                         Q +D DP++DEP+LE +WPHLQVVYEF +RF+VS EV+AK AK++VDQ  CL +++LFD
Sbjct:   53 LKDLPHLKDTSLQRREALFQQKLELCSVIFNFDDPTSDKRGKDLKRQTLLELVDYVNNPGGQKIFTEALMPDIMAMVSANICRSLPPQTEDFDPEEDEPVLEASWPHLQVVYEFFLRFIVSGEVNAKVAKKFVDQKFCLSIIELFD 198
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12119.1651.1 vs. uniprot
Match: A0A7S0F7B0_9STRA (Serine/threonine protein phosphatase 2A regulatory subunit n=5 Tax=Bacillariophycidae TaxID=33850 RepID=A0A7S0F7B0_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.830e-38
Identity = 77/146 (52.74%), Postives = 96/146 (65.75%), Query Frame = 1 
Query:  157 IKELPLLRDTSQHQREALFQQKLKLCTVVFDMTDPMENSRDKEVKRCTLLELVEYINSTHGQQ-------------------------PDDCDPDKDEPLLEEAWPHLQVVYEFLVRFVVSSEVDAKQAKQYVDQAMCLQLVDLFD 519
            +KELP LRD    +RE LF  KLKLC+V+F   DPM + R K++KR TLLELV+Y+N+  GQ+                          DD DP++DEP+LE AWPHLQV YEF +RF+VSSEV+AK AK+YVDQ  CLQLV+LFD
Sbjct:   85 LKELPALRDAPPAKREELFILKLKLCSVIFSFDDPMADKRGKDMKRQTLLELVDYVNTPAGQKIFTESVMGDLMAMVSANVCRALPPATDDFDPEEDEPVLEPAWPHLQVAYEFFLRFIVSSEVNAKAAKKYVDQKFCLQLVELFD 230
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12119.1651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWJ6_ECTSI2.850e-10997.69Serine/threonine protein phosphatase 2A 57 kDa reg... [more]
A0A6S9GHG6_HETAK2.680e-4154.11Serine/threonine protein phosphatase 2A regulatory... [more]
A0A7S1FZL3_9STRA2.690e-4151.28Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2V448_9STRA3.230e-4154.11Serine/threonine protein phosphatase 2A regulatory... [more]
I2CR38_NANGC3.070e-4048.39Protein phosphatase 2 (Formerly 2A), regulatory su... [more]
D0N579_PHYIT3.860e-4052.05Serine/threonine protein phosphatase 2A regulatory... [more]
A0A7S1FZ03_9STRA7.670e-4051.28Serine/threonine protein phosphatase 2A regulatory... [more]
A0A7S0GE31_9STRA3.410e-3951.37Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
K3XB75_GLOUD1.600e-3850.00Serine/threonine protein phosphatase 2A regulatory... [more]
A0A7S0F7B0_9STRA1.830e-3852.74Serine/threonine protein phosphatase 2A regulatory... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12119contigE-fasciculatus_F_contig12119:1187..4135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score339.0
Seed ortholog evalue1.3e-90
Seed eggNOG ortholog2880.D7FWJ6
KEGG koko:K11584
KEGG Pathwayko03015,ko04071,ko04113,ko04114,ko04151,ko04152,ko04261,ko04728,ko05165,map03015,map04071,map04113,map04114,map04151,map04152,map04261,map04728,map05165
GOsGO:0000096,GO:0000159,GO:0000902,GO:0000904,GO:0002682,GO:0002683,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005777,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008287,GO:0009058,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009653,GO:0009759,GO:0009888,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010026,GO:0010090,GO:0010565,GO:0010646,GO:0010648,GO:0016043,GO:0016143,GO:0016144,GO:0017144,GO:0018130,GO:0019216,GO:0019217,GO:0019220,GO:0019222,GO:0019438,GO:0019748,GO:0019752,GO:0019757,GO:0019758,GO:0019760,GO:0019761,GO:0023051,GO:0023057,GO:0030154,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031347,GO:0031348,GO:0031974,GO:0031981,GO:0031998,GO:0032000,GO:0032502,GO:0032989,GO:0032991,GO:0033353,GO:0034641,GO:0042278,GO:0042325,GO:0042343,GO:0042430,GO:0042435,GO:0042579,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0045088,GO:0045824,GO:0045834,GO:0045923,GO:0046128,GO:0046320,GO:0046321,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0048869,GO:0050776,GO:0050777,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050994,GO:0050996,GO:0051174,GO:0051186,GO:0055086,GO:0062012,GO:0062013,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0072521,GO:0080090,GO:0080134,GO:0080183,GO:0090342,GO:0090558,GO:0090626,GO:0097159,GO:1900457,GO:1900458,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901657,GO:1901659,GO:1902494,GO:1903293,GO:2000377
EggNOG free text desc.protein phosphatase regulator activity
EggNOG OGsKOG2085@1,KOG2085@2759
Ec32 ortholog descriptionProtein phosphatase 2A regulatory subunit B-prime
Ec32 orthologEc-25_003320.1
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein phosphatase 2A, regulatory B subunit, B56
Ec32 orthologEc-25_003320.2
Exons6
Model size519
Cds size519
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12119.1651.1prot_E-fasciculatus_F_contig12119.1651.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12119 1187..4135 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927722.004577-CDS-E-fasciculatus_F_contig12119:1186..12631622927722.004577-CDS-E-fasciculatus_F_contig12119:1186..1263Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12119 1187..1263 +
1695995665.6457832-CDS-E-fasciculatus_F_contig12119:1186..12631695995665.6457832-CDS-E-fasciculatus_F_contig12119:1186..1263Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12119 1187..1263 +
1622927722.0190246-CDS-E-fasciculatus_F_contig12119:1580..16831622927722.0190246-CDS-E-fasciculatus_F_contig12119:1580..1683Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12119 1581..1683 +
1695995665.6579232-CDS-E-fasciculatus_F_contig12119:1580..16831695995665.6579232-CDS-E-fasciculatus_F_contig12119:1580..1683Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12119 1581..1683 +
1622927722.0336363-CDS-E-fasciculatus_F_contig12119:2251..23461622927722.0336363-CDS-E-fasciculatus_F_contig12119:2251..2346Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12119 2252..2346 +
1695995665.666403-CDS-E-fasciculatus_F_contig12119:2251..23461695995665.666403-CDS-E-fasciculatus_F_contig12119:2251..2346Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12119 2252..2346 +
1622927722.0455365-CDS-E-fasciculatus_F_contig12119:2662..27321622927722.0455365-CDS-E-fasciculatus_F_contig12119:2662..2732Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12119 2663..2732 +
1695995665.6751792-CDS-E-fasciculatus_F_contig12119:2662..27321695995665.6751792-CDS-E-fasciculatus_F_contig12119:2662..2732Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12119 2663..2732 +
1622927722.0590076-CDS-E-fasciculatus_F_contig12119:3451..35141622927722.0590076-CDS-E-fasciculatus_F_contig12119:3451..3514Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12119 3452..3514 +
1695995665.6866894-CDS-E-fasciculatus_F_contig12119:3451..35141695995665.6866894-CDS-E-fasciculatus_F_contig12119:3451..3514Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12119 3452..3514 +
1622927722.0737734-CDS-E-fasciculatus_F_contig12119:4024..41351622927722.0737734-CDS-E-fasciculatus_F_contig12119:4024..4135Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12119 4025..4135 +
1695995665.6954281-CDS-E-fasciculatus_F_contig12119:4024..41351695995665.6954281-CDS-E-fasciculatus_F_contig12119:4024..4135Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12119 4025..4135 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12119.1651.1

>prot_E-fasciculatus_F_contig12119.1651.1 ID=prot_E-fasciculatus_F_contig12119.1651.1|Name=mRNA_E-fasciculatus_F_contig12119.1651.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=173bp
PVCSTPTLINGVEDTPVADPELPRRASTALSRRSTSFESSRSSDIAFIRQ
EFIKELPLLRDTSQHQREALFQQKLKLCTVVFDMTDPMENSRDKEVKRCT
LLELVEYINSTHGQQPDDCDPDKDEPLLEEAWPHLQVVYEFLVRFVVSSE
VDAKQAKQYVDQAMCLQLVDLFD
back to top

mRNA from alignment at E-fasciculatus_F_contig12119:1187..4135+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12119.1651.1 ID=mRNA_E-fasciculatus_F_contig12119.1651.1|Name=mRNA_E-fasciculatus_F_contig12119.1651.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2949bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12119:1187..4135+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTGTTTGCAGCACGCCGACGCTCATCAACGGTGTGGAGGACACCCCGGT
AGCCGACCCGGAGTTGCCGAGACGCGCGTGAGTTATTCTTGTGTCTTGTT
GTCGCGTTGTCGCTACAACAGCGTTTGTGTTACTTGTTCGCGTGGCGTTG
CTGTTGCTTCGGTTTGTGCCTAGGGCTGACCAGTGAGAAGGCCGTTCTTT
ATGCCGCACGTTGATTTGTTGCGTGTTTTCGGTCTATGATGGTATTGATG
CCGCGGAACGGTGTGTATTGCTTTCTTCTTGTCTATGATGGTCTTGATGT
CCCACGTTGTGTGTTGCTTTCTTTCTGTCTGGCATTGTCTTGACTTGATG
CATGCGGCACGTTGTGTGTTGCCTTCTGTCGGTGTCTCGCTCAGGTCCAC
CGCTTTGAGTCGAAGATCGACATCCTTCGAATCCAGCCGCTCGAGCGACA
TCGCGTTCATCCGACAAGAGTTCATAAAGGAGCTACCTCTCCTCAGGGTA
AGCCGAGCTGCTTTATTGTTTCTCCGCTACCCCTTTGAGTTGTAGACAAC
GGGGACGACGTCATAGCCAGAGCGGCAGAAAGACGTTTCAATACTCGGTA
CAATAGGCGTTTGCATGTGATGTGTCTGTCCTGAGAGGCGAATCCTTACA
GTGTCGGAGGGACTGCACTTTTACCCTGGGATAAGGTATACTTCTATTAT
TGTGGGTGTGTTTTTTTTCGTTTGCCACGGGCGGCAGAAACTGCCCCCCC
CTCCCCCCCCCGTAGCTAAGTACCTAACAACGGCATCGCCTCGGAGAGCG
TCATGCGTTGGCCATCGGGTCATGGAGAGTTGTTGCAGCTTTTAAGGCAA
GTATTTACTGTAGATACCCCGCCCGTGCTCACGATTTCACTCTCTCGATA
CTAAATAGTAAAATGTGATTGCCCTATGATAGCACGTTGTTCCCTTTCAG
ATTGAGATCGATCGCGGTGCGGAGAGTTGTATGGGTTGTTGATGTGACAA
GGCTGGGTAACATCATGTCGGTTTACTCATGCATTTTTGCTTCGTTTTAT
CCTTGCCTTGTGCAGGACACGTCACAGCACCAGCGAGAGGCGTTGTTCCA
GCAGAAGCTCAAGCTGTGCACGGTGGTGTTTGACATGACGGACCCGATGG
AAAATTCGAGGTCAGACGCGATCAACGGCTTATCAAAGGATGATGGAGAC
GTCTAAGTTGTACGGGTTAAAGTTTGGGTGGTGTAGGGGTTAGCGTTGGA
CCCATGGGTGAATTTTGTCTATCCTCGAGCTAAGACTACCGCTGTAGACT
GAAACGATAGGTCAGAAATGAAGAAGCCTACAACTAGCTCTTCCATCATT
TTTAGCCTTTATTCCATTGCCTGTTTTGTCTGCTCGATTCTCCGGACACT
TAACTTGGTTGTTTTGTTGCCCGTGTGTTGTTGCCCGTGGCGCGGCTCTT
ACGACGGCGGCGGTGTGGTAATGAAGGGATAAGGAAGTGAAGAGGTGCAC
GCTGCTGGAGCTAGTGGAGTACATCAACTCGACGCACGGGCAACAGGTGA
GTTGAGACAAGCGCTTGGCACCGCGAAGCTAGGCAGCACAGCCAGTCCGG
GGAGAAGCTTTGGTCTTGGCTAGGTACCAGAGATGAGAGCCCTTCCAGCG
GTTAGGAAAAGGGGTTCCGCGGAATGTACATTGTGCTGGGGTGACCCCGG
ATCGCGGCTCGTTGGTAGAACAGGCGAGGGCGATGAATCGACGACAGTAT
TGTCTTTCGGGAGCAGCACGAGGATGTAGAAACCCTTCCATGCGCGTTGA
GGGTTGGGCAGGTCGGGACATGCCGCGCAATGGCCGATTGGCATATGCGG
TTGCCCGACAGTAGTCTGTGCTGTATACCCTCCCCCACCACCTCCAGTAG
TTGGGGCATGGCGGCAACACGGGGCAAACATACGAGGCGCTCCTGTGTTG
TTTCTCGAGGTTAATGGCCAAGTCACATGACATGCTACTGCCCCGGGCTT
TCGAACGAGCTCAATAAACAATAAACGAATACCCCCCCCCAACCTCGATT
TGGCCATCGGTGATCGGTCCTGTGGGAACAATGCTCCGTCCTCTCAAGGA
CGCGTGGTCAATGGTCTAATATGACGAAGGCATGTAAAATGTAAGAGTAC
CCCCCCTGCCCCGCCCCGTCCCCCGCTTTTTCGGATTAAGATCTTCACCC
CGGCGGTGATGCCAGACGTGATCGCCATGGTGAAGGCGAATATTTGTCGA
GCGTTGCCGCCGCAGCCTGACGACTGCGATCCGGACAAAGACGAGCCTTT
GCTCGAGGAGGCCTGGCCGCACTTGCAGGTGAGGGGAAGGCAGGCGGGGT
ATGCCTTCGGGCGGCGTTCGAGGCCTTTTTTGCGTGCGTGTTAAGTGTGA
AGGCGACAACAACAACAACGAAGTGTAGTTGCGAAGTTTGTTCCTTTTAA
AATTAAGAGACAAGTACAAACACCGAAAGACTACCCGTTCGAGAAAAAGC
CACAGTCGAAGGGGATGTGTTCAAGTCTTTGCTGGCATCGACGTCGCCTG
CCGGCTACCAAGCGAGAATACCATGGTGTTTGTGTTGTCGTTGTCGTTTT
TTGTTACAATTAAGTGGCTTCCACCGCGTTAACCGGCTCACCGGCTGACC
AATGTCCTCACGTAGGTCCTGACGGAACGAACGAGACTCATACAGTACCA
GTAATTTGCTTTCAAAACGATGTTGACTACAGCTATATAACAACAATGGA
TGGATGGTTGAAAGCGCTTGCTTCGCCTCTTATCCTCCGGGTGTGCTGGT
ATTGTTGTTTTTGTGTTTTTCCTCGTTCTGCGACATAGGTGGTGTATGAG
TTTTTAGTCCGGTTTGTGGTGTCTTCGGAGGTGGACGCGAAGCAGGCCAA
GCAGTACGTGGACCAGGCTATGTGCTTGCAGCTCGTCGATCTCTTCGAC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12119:1187..4135+

>mRNA_E-fasciculatus_F_contig12119.1651.1 ID=mRNA_E-fasciculatus_F_contig12119.1651.1|Name=mRNA_E-fasciculatus_F_contig12119.1651.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1038bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12119:1187..4135+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTGTTTGCAGCACGCCGACGCTCATCAACGGTGTGGAGGACACCCCGGT
AGCCGACCCGGAGTTGCCGAGACGCGCCCTGTTTGCAGCACGCCGACGCT
CATCAACGGTGTGGAGGACACCCCGGTAGCCGACCCGGAGTTGCCGAGAC
GCGCGTCCACCGCTTTGAGTCGAAGATCGACATCCTTCGAATCCAGCCGC
TCGAGCGACATCGCGTTCATCCGACAAGAGTTCATAAAGGAGCTACCTCT
CCTCAGGGTCCACCGCTTTGAGTCGAAGATCGACATCCTTCGAATCCAGC
CGCTCGAGCGACATCGCGTTCATCCGACAAGAGTTCATAAAGGAGCTACC
TCTCCTCAGGGACACGTCACAGCACCAGCGAGAGGCGTTGTTCCAGCAGA
AGCTCAAGCTGTGCACGGTGGTGTTTGACATGACGGACCCGATGGAAAAT
TCGAGGACACGTCACAGCACCAGCGAGAGGCGTTGTTCCAGCAGAAGCTC
AAGCTGTGCACGGTGGTGTTTGACATGACGGACCCGATGGAAAATTCGAG
GGATAAGGAAGTGAAGAGGTGCACGCTGCTGGAGCTAGTGGAGTACATCA
ACTCGACGCACGGGCAACAGGGATAAGGAAGTGAAGAGGTGCACGCTGCT
GGAGCTAGTGGAGTACATCAACTCGACGCACGGGCAACAGCCTGACGACT
GCGATCCGGACAAAGACGAGCCTTTGCTCGAGGAGGCCTGGCCGCACTTG
CAGCCTGACGACTGCGATCCGGACAAAGACGAGCCTTTGCTCGAGGAGGC
CTGGCCGCACTTGCAGGTGGTGTATGAGTTTTTAGTCCGGTTTGTGGTGT
CTTCGGAGGTGGACGCGAAGCAGGCCAAGCAGTACGTGGACCAGGCTATG
TGCTTGCAGCTCGTCGATCTCTTCGACGTGGTGTATGAGTTTTTAGTCCG
GTTTGTGGTGTCTTCGGAGGTGGACGCGAAGCAGGCCAAGCAGTACGTGG
ACCAGGCTATGTGCTTGCAGCTCGTCGATCTCTTCGAC
back to top