mRNA_E-fasciculatus_F_contig12115.1648.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12115.1648.1
Unique NamemRNA_E-fasciculatus_F_contig12115.1648.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12115.1648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12115contigE-fasciculatus_F_contig12115:89..650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size562
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12115.1648.1prot_E-fasciculatus_F_contig12115.1648.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12115 163..486 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927721.7075992-UTR-E-fasciculatus_F_contig12115:88..1621622927721.7075992-UTR-E-fasciculatus_F_contig12115:88..162Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12115 89..162 +
1695995665.5002635-UTR-E-fasciculatus_F_contig12115:88..1621695995665.5002635-UTR-E-fasciculatus_F_contig12115:88..162Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12115 89..162 +
1622927721.7335544-UTR-E-fasciculatus_F_contig12115:486..6501622927721.7335544-UTR-E-fasciculatus_F_contig12115:486..650Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12115 487..650 +
1695995665.518567-UTR-E-fasciculatus_F_contig12115:486..6501695995665.518567-UTR-E-fasciculatus_F_contig12115:486..650Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12115 487..650 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927721.7215097-CDS-E-fasciculatus_F_contig12115:162..4861622927721.7215097-CDS-E-fasciculatus_F_contig12115:162..486Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12115 163..486 +
1695995665.508086-CDS-E-fasciculatus_F_contig12115:162..4861695995665.508086-CDS-E-fasciculatus_F_contig12115:162..486Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12115 163..486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12115.1648.1

>prot_E-fasciculatus_F_contig12115.1648.1 ID=prot_E-fasciculatus_F_contig12115.1648.1|Name=mRNA_E-fasciculatus_F_contig12115.1648.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=108bp
MAFFLPPTSVYVPFARLDGEQSIFLSGCWERQGVGWTRTVWIVGGWGGGR
YTWRARGRPPVNIPLCERLSGNINPVYDLPKAHRTSTYLRSGAGARVEGF
RGINDPL*
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mRNA from alignment at E-fasciculatus_F_contig12115:89..650+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12115.1648.1 ID=mRNA_E-fasciculatus_F_contig12115.1648.1|Name=mRNA_E-fasciculatus_F_contig12115.1648.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=562bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12115:89..650+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGAATATGTAGTGCCTCCAAGCGACAACCAACGCTTGTGTAGAGTACTG
TAGAATTGTATCATACTGTTTTCGATGGCGTTTTTTTTACCCCCAACATC
TGTGTATGTGCCATTCGCCCGACTCGATGGCGAGCAAAGCATCTTTCTGA
GTGGGTGTTGGGAGAGACAAGGGGTGGGGTGGACACGGACGGTATGGATA
GTAGGCGGGTGGGGTGGTGGCCGGTACACATGGCGCGCCAGAGGGCGCCC
GCCCGTGAATATACCTCTTTGTGAAAGGCTCAGTGGCAACATCAACCCTG
TGTACGACCTTCCAAAGGCACACCGAACAAGCACCTACCTCCGGTCGGGT
GCTGGGGCCAGGGTTGAGGGATTCCGTGGCATCAACGACCCTTTGTAGCA
CCTGCGAAGGGCACGCCGACTGAGCGCCCAAACCTCCTGTTGAGGCTAGG
TCTTACGGTCGGGAGGCACAGCAGTCGTAGCTCATCGCCCGAAAATCCAA
GGCATGCCTTGGTTATATCCAAGCGCAACACTACACCTACCTTTATACTG
CTGTACACGCAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12115:89..650+

>mRNA_E-fasciculatus_F_contig12115.1648.1 ID=mRNA_E-fasciculatus_F_contig12115.1648.1|Name=mRNA_E-fasciculatus_F_contig12115.1648.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=648bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12115:89..650+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGTTTTTTTTACCCCCAACATCTGTGTATGTGCCATTCGCCCGACT
CGATGGCGAGCAAAGCATCTTTCTGAGTGGGTGTTGGGAGAGACAAGGGG
TGGGGTGGACACGGACGGTATGGATAGTAGGCGGGTGGGGTGGTGGCCGG
TACACATGGCGCGCCAGAGGGCGCCCGCCCGTGAATATACCTCTTTGTGA
AAGGCTCAGTGGCAACATCAACCCTGTGTACGACCTTCCAAAGGCACACC
GAACAAGCACCTACCTCCGGTCGGGTGCTGGGGCCAGGGTTGAGGGATTC
CGTGGCATCAACGACCCTTTGTAGATGGCGTTTTTTTTACCCCCAACATC
TGTGTATGTGCCATTCGCCCGACTCGATGGCGAGCAAAGCATCTTTCTGA
GTGGGTGTTGGGAGAGACAAGGGGTGGGGTGGACACGGACGGTATGGATA
GTAGGCGGGTGGGGTGGTGGCCGGTACACATGGCGCGCCAGAGGGCGCCC
GCCCGTGAATATACCTCTTTGTGAAAGGCTCAGTGGCAACATCAACCCTG
TGTACGACCTTCCAAAGGCACACCGAACAAGCACCTACCTCCGGTCGGGT
GCTGGGGCCAGGGTTGAGGGATTCCGTGGCATCAACGACCCTTTGTAG
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