mRNA_E-fasciculatus_F_contig12110.1647.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12110.1647.1
Unique NamemRNA_E-fasciculatus_F_contig12110.1647.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12110.1647.1 vs. uniprot
Match: D7FZQ4_ECTSI (Helicase ATP-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZQ4_ECTSI)

HSP 1 Score: 549 bits (1414), Expect = 1.780e-184
Identity = 275/277 (99.28%), Postives = 275/277 (99.28%), Query Frame = 1
Query:    1 RLPPLSRFTTGWKLDEWQKRVLRQVDKKNSAIVCAPTSSGKTIISTYVTVAAGASGKILFVVPTEPLVWQVAALFNKLLRGQQVAICMDQIYYRPDIELRTIVGTPMALETALTKLRGPVGDEVVGKLDYTQMKGGFDFDYAVYDEVHSLDSEEGDALQRLIRAVNCNFLALSATIGNAQQLKDWWTEVQGEQARDLEVIEAPAGAGEGRRGFVPPSGEVYLEEHSGRFINLQRYVWMGSTFVNLHPCSAMSVELLQSGRTEEVSLSFTPHDTYKLW 831
            RLPPLSRFTTGWKLDEWQKRVLRQVDKKNSAIVCAPTSSGKTIISTYVTVAAGASGKILFVVPTEPLVWQVAALFNKLLRGQ VAICMDQIYYRPDIELRTIVGTPMALETALTKLRG VGDEVVGKLDYTQMKGGFDFDYAVYDEVHSLDSEEGDALQRLIRAVNCNFLALSATIGNAQQLKDWWTEVQGEQARDLEVIEAPAGAGEGRRGFVPPSGEVYLEEHSGRFINLQRYVWMGSTFVNLHPCSAMSVELLQSGRTEEVSLSFTPHDTYKLW
Sbjct:  287 RLPPLSRFTTGWKLDEWQKRVLRQVDKKNSAIVCAPTSSGKTIISTYVTVAAGASGKILFVVPTEPLVWQVAALFNKLLRGQ-VAICMDQIYYRPDIELRTIVGTPMALETALTKLRGAVGDEVVGKLDYTQMKGGFDFDYAVYDEVHSLDSEEGDALQRLIRAVNCNFLALSATIGNAQQLKDWWTEVQGEQARDLEVIEAPAGAGEGRRGFVPPSGEVYLEEHSGRFINLQRYVWMGSTFVNLHPCSAMSVELLQSGRTEEVSLSFTPHDTYKLW 562          
BLAST of mRNA_E-fasciculatus_F_contig12110.1647.1 vs. uniprot
Match: A0A836CAV0_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAV0_9STRA)

HSP 1 Score: 352 bits (903), Expect = 5.040e-110
Identity = 179/281 (63.70%), Postives = 219/281 (77.94%), Query Frame = 1
Query:    1 RLPPLSRFTTGWKLDEWQKRVLRQVDKKNSAIVCAPTSSGKTIISTYVTVAAGASGKILFVVPTEPLVWQVAALFNKLLRGQQVAICMDQIYYRPDIELRTIVGTPMALETALTKLRGPVGDEVVGKLDYTQMKGGFDFDYAVYDEVHSLDSEEGDALQRLIRAVNCNFLALSATIGNAQQLKDWWTEVQGEQARDLEVIEAPAGAGEGRRGFVPPSGEVYLEEHSGRFINLQRYVWMGST--FVNLHPCSAMSVELL--QSGRTEEVSLSFTPHDTYKLW 831
            RLPPLSRF+TGWKLD+WQKRVL  VD+  SAIVCAPTSSGKT+IS+YV   + AS ++LFVVPTEPLVWQVAALF+KLL+G  V +CMDQ+++RPDI LR IVGTP  LETAL+KLRGP GDE + K+DY QM+GGF FDYA++DEVHSLD +EG ALQRLI+ ++CNFLALSATIGNAQ+LK+WW  ++G+Q  D+E+IEA A  G            ++LEEHSGRFINLQR VWMG    F  LHP +A+++++L  + G     SL FTP DTY LW
Sbjct:  219 RLPPLSRFSTGWKLDDWQKRVLAVVDRHQSAIVCAPTSSGKTVISSYVASDSAAS-RVLFVVPTEPLVWQVAALFHKLLKGS-VGLCMDQMHFRPDINLRVIVGTPQPLETALSKLRGPAGDEALNKVDYAQMQGGFAFDYAIFDEVHSLDGDEGAALQRLIQGLSCNFLALSATIGNAQELKEWWEGIRGQQLEDVEMIEA-AQEGPSDEPKQLTDASIFLEEHSGRFINLQRMVWMGDAGQFKPLHPLAAVTLDMLKVEGGCFHTFSLPFTPQDTYALW 496          
BLAST of mRNA_E-fasciculatus_F_contig12110.1647.1 vs. uniprot
Match: A0A7S4A060_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A060_9STRA)

HSP 1 Score: 264 bits (675), Expect = 1.970e-77
Identity = 146/281 (51.96%), Postives = 187/281 (66.55%), Query Frame = 1
Query:    1 RLPPLSRFTTGWKLDEWQKRVLRQVDKKNSAIVCAPTSSGKTIISTYVTVAAGASGKILFVVPTEPLVWQVAALFNKLLRGQ-QVAICMDQIYYRPDIEL-RTIVGTPMALETALTKLRGPVGDEVVG-KLDYTQMKGGFDFDYAVYDEVHSLDSEEGDALQRLIRAVNCNFLALSATIGNAQQLKDWWTEVQGEQARDLEVIEAPAGAGEGRRGFVPPSGEVYLEEHSGRFINLQRYVW-MGSTFVNLHPCSAMSVELLQSGRTEEVSLSFTPHDTYKLW 831
            RLPPLSRF  GW+LD WQK+VLR +D   SA+VCAPTSSGKT+ISTY  VA   + ++LFVVPTEPLVWQVAA+F KLL+G  +VA+  +Q+ YRP  +  R +VGTP+ALE++L K+RG VG+E    + DY Q+ GGFDFDYAV+DEVH+LD +EG ALQRL+R V C  LALSATIGNA +L+DWW  V+ + A                     P   V L EH+GRFIN+Q  V         LHPC+A+ V  L     E+++ + TP D+  L+
Sbjct:  217 RLPPLSRFLKGWRLDAWQKKVLRHIDNGKSAVVCAPTSSGKTVISTYTCVA---NERVLFVVPTEPLVWQVAAMFEKLLQGSARVALATNQLAYRPSEDRSRVVVGTPLALESSLVKIRGQVGEECTSTRWDYAQLDGGFDFDYAVFDEVHALDGDEGAALQRLVRYVTCPTLALSATIGNASELRDWWQCVRDDAA---------------------PGDAVELVEHAGRFINVQNLVLDPRGQLAALHPCAALKVPQLLGD--EKLAFAMTPADSKSLY 471          
BLAST of mRNA_E-fasciculatus_F_contig12110.1647.1 vs. uniprot
Match: F0YFT5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFT5_AURAN)

HSP 1 Score: 236 bits (602), Expect = 3.900e-67
Identity = 136/280 (48.57%), Postives = 179/280 (63.93%), Query Frame = 1
Query:    1 RLPPLSRFTTGWKLDEWQKRVLRQVDKKNSAIVCAPTSSGKTIISTYVTVAAGASGKILFVVPTEPLVWQVAALFNKLLRGQQVAICMDQIYYRP-DIELRTIVGTPMALETALTKLRGPVGDEVVGKL-DYTQMKGGFDFDYAVYDEVHSLDSEEGDALQRLIRAVNCNFLALSATIGNAQQLKDWWTEVQGEQARDLEVIEAPAGAGEGRRGFVPPSGEVYLEEHSGRFINLQRYVWMGSTFVN-LHPCSAMSVELLQSGRTEEVSLSFTPHDTYKLW 831
            RLPPLS F   W+LD WQK+VLR +D   SA+VCAPTSSGKT+ISTY  VA   + ++LFVVPTEPL                VA+  +Q+ YRP + + R +VGTP+ALE++L K+RG VGDE   K  DY Q+ GGFDFDYAV+DEVH+LD +EG ALQRL+R+V C  LALSATIGNA QL+ WW  V+     D  +++            V  S  V L EHSGRFIN+Q  V      ++ LHPC+A++ + L     E+++ + TP D+ +L+
Sbjct:  982 RLPPLSPFLKSWRLDAWQKKVLRHIDAGKSAVVCAPTSSGKTVISTYTCVA---NDRVLFVVPTEPL----------------VALATNQLAYRPSEDKSRIVVGTPLALESSLVKIRGQVGDEATSKRWDYAQLDGGFDFDYAVFDEVHALDGDEGAALQRLVRSVTCPTLALSATIGNAAQLQGWWQGVRD----DCALVDG-----------VESSDRVELVEHSGRFINVQNLVLDPDAKLDRLHPCAALTTDQLLGD--EKIAFAMTPADSKQLY 1225          
BLAST of mRNA_E-fasciculatus_F_contig12110.1647.1 vs. uniprot
Match: A0A448YY16_9STRA (Helicase ATP-binding domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YY16_9STRA)

HSP 1 Score: 234 bits (598), Expect = 1.080e-66
Identity = 140/289 (48.44%), Postives = 186/289 (64.36%), Query Frame = 1
Query:    1 RLPPLSRFTTGWKLDEWQKRVLRQVDKKNSAIVCAPTSSGKTIISTYVTVAAGASGKILFVVPTEPLVWQVAALFNKLLRGQQVAICMDQIYYRPDI-ELRTIVGTPMALETALTKLRGPVGDEVV-GKLDYTQMKGGFD-FDYAVYDEVHSLDSEEGDALQRLIRAVNCNFLALSATIGNAQQLKDWWTEVQGEQARDLEVIEAPAGAGEGRRGFVPPSGEVYLEEHSGRFINLQRYVWM------GST---FVNLHPCSAMSVELLQSGRTEEVSLSFTPHDTYKLW 831
            RLPPLSR+    +L+ WQ  +L+ +D + +A+VCAPTSSGKTI+STY      A+G +LFV+P+E LVWQVA+L+ +  +G  V +C +QI ++    E +  VGTP+ALE +L K+RG  GDE+  G+ ++  + GGF+ FDY V DEVH+L+  EGDALQR+I+A NC  LALSATIGNA QLKDW+  VQ EQ  +  VI+AP           PP  +V L+EHS RFINLQRYV        G T      LHP +AM+ + L +      SL+ TPHD   LW
Sbjct:  332 RLPPLSRYNRKLQLEPWQFDILKAIDDRQTAVVCAPTSSGKTILSTYT--CKNANGPVLFVLPSEVLVWQVASLYYQFFKGN-VTVCTEQITFQEVTGEAQVYVGTPIALERSLCKVRGIAGDEMTKGEREFMILDGGFNQFDYLVLDEVHTLNGPEGDALQRIIKACNCPMLALSATIGNAVQLKDWFASVQKEQM-EATVIDAPE---------TPP--DVVLKEHSSRFINLQRYVVTEKEGKDGKTEAKLTKLHPVAAMTSDRLTNQPELISSLAMTPHDMMTLW 605          
BLAST of mRNA_E-fasciculatus_F_contig12110.1647.1 vs. uniprot
Match: A0A4D9CYE4_9STRA (Helicase ATP-binding domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CYE4_9STRA)

HSP 1 Score: 231 bits (590), Expect = 1.520e-65
Identity = 136/266 (51.13%), Postives = 176/266 (66.17%), Query Frame = 1
Query:    1 RLPPLSRFTTGWKLDEWQKRVLRQVDKKNSAIVCAPTSSGKTIISTYVTVAAGASGKILFVVPTEPLVWQVAALFNKLLRGQQVAICMDQIYYRPDIE----LRTIVGTPMALETALTKLRGPVGDEVVGKLDYTQMKGGF-DFDYAVYDEVHSLDSEEGDALQRLIRAVNCNFLALSATIGNAQQLKDWWTEVQ----GEQARDLEVIEAPAGAGEGRRGFVPPSGEVYLEEHSGRFINLQRYVWMGSTFVNLHPCSAMSVELLQ 771
            RLPPLSRFT G  LD WQKRVL  +D++ S IVCAPTSSGKTI+S+YVT+ A    KILFVVPTEPLVWQVAA+F K+L G+ VA+  +QI Y P  E     R IVGTP+ALE+AL+K RG  G E++G+ D++  +GGF +F+Y +YDEVH+LD EEG ALQR+I+AV CNFLALSATIGN   L+DWW  V     G++  ++E + A      GR       GE Y  E   R + ++        +++L P     V+ L+
Sbjct:  393 RLPPLSRFTFGRSLDAWQKRVLGLIDERRSVIVCAPTSSGKTILSSYVTMRAD---KILFVVPTEPLVWQVAAMFYKVLGGE-VAVVTNQIVYNPKREDPRDWRVIVGTPLALESALSKPRGREGAEMLGQQDFSTFRGGFHEFEYVIYDEVHTLDGEEGAALQRIIKAVRCNFLALSATIGNGPALRDWWQGVHEDHVGQERAEVEAMLA------GRGDQTREEGEDY--EMLARLVRMR--------YIHLSPAQGPDVKALK 638          
BLAST of mRNA_E-fasciculatus_F_contig12110.1647.1 vs. uniprot
Match: A0A7S3P4A9_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P4A9_9STRA)

HSP 1 Score: 231 bits (588), Expect = 2.460e-65
Identity = 133/289 (46.02%), Postives = 187/289 (64.71%), Query Frame = 1
Query:    1 RLPPLSRFTTGWKLDEWQKRVLRQVDKKNSAIVCAPTSSGKTIISTYVTVAAGASGKILFVVPTEPLVWQVAALFNKLLRGQQVAICMDQIYYRPDI-ELRTIVGTPMALETALTKLRGPVGDEVV-GKLDYTQMKGGFD-FDYAVYDEVHSLDSEEGDALQRLIRAVNCNFLALSATIGNAQQLKDWWTEVQGEQARDLEVIEAPAGAGEGRRGFVPPSGEVYLEEHSGRFINLQRYVWM------GST---FVNLHPCSAMSVELLQSGRTEEVSLSFTPHDTYKLW 831
            RLPPLSR+   +KL++WQ ++L  +DK+ SA+VCAPTSSGKT++STY      A G +LFV+P+E LVWQVA+ + +  +G  V +C DQI ++    + +  +GTP ALE +++K+RG  G+E+  G+ ++  + GG+  FDY V DEVH+L+  EGDALQR+I+  NC  LALSATIGNA QL+DW++ V+ EQ  +  V++AP           P +G+V L+E+S RFINLQRYV        G T    V LHP +AM+ + L+       SLS TP D   LW
Sbjct:  340 RLPPLSRYNRQFKLEDWQCKILGAIDKRQSAVVCAPTSSGKTLLSTYT--CKNAKGTVLFVLPSEVLVWQVASTYYQFFKGN-VTVCTDQITFQEVTGDAQVYIGTPKALERSISKVRGIAGEEMQKGEREFMILDGGYSQFDYLVLDEVHTLNGPEGDALQRIIKCCNCPVLALSATIGNATQLRDWFSSVRTEQI-EATVVDAP-----------PDAGDVLLQEYSARFINLQRYVVNEVEAKDGKTKKKLVKLHPIAAMTPKRLKEEPELIESLSMTPSDLMDLW 613          
BLAST of mRNA_E-fasciculatus_F_contig12110.1647.1 vs. uniprot
Match: A0A7S3Q8K1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q8K1_9STRA)

HSP 1 Score: 230 bits (586), Expect = 3.810e-65
Identity = 136/289 (47.06%), Postives = 180/289 (62.28%), Query Frame = 1
Query:    1 RLPPLSRFTTGWKLDEWQKRVLRQVDKKNSAIVCAPTSSGKTIISTYVTVAAGASGKILFVVPTEPLVWQVAALFNKLLRGQQVAICMDQIYYRP-DIELRTIVGTPMALETALTKLRGPVGDEVV-GKLDYTQMKGGF-DFDYAVYDEVHSLDSEEGDALQRLIRAVNCNFLALSATIGNAQQLKDWWTEVQGEQARDLEVIEAPAGAGEGRRGFVPPSGEVYLEEHSGRFINLQRYVWMGST---------FVNLHPCSAMSVELLQSGRTEEVSLSFTPHDTYKLW 831
            RLPPLSR+   +KL+EWQ  +L  +D + SA+VCAPTSSGKT++STY    A   G +LFV+P+E LVWQ+AA + +  RG  V IC DQI ++    + +  +GTP ALE A+TK RG  G E+  G+ ++T + GGF  FDY V DEVH+++  EGDALQR+I+A NC FLALSATIGNA QLK W+ +V      D ++++APA           P G V L+EH  RFINLQRY    S           V LHP +AM+ E L++     + LS TP D   +W
Sbjct:  247 RLPPLSRYNRTFKLEEWQCDILEAIDNRQSAVVCAPTSSGKTLLSTYTCKIA--QGTVLFVLPSEALVWQIAATYYEFFRGN-VTICTDQISFQEISGDTQVYIGTPRALEKAITKARGCAGQEMAKGEKEFTILDGGFHQFDYLVLDEVHTMNGPEGDALQRIIKACNCPFLALSATIGNAVQLKSWFEKVLNSHV-DAQLVDAPA----------KPEG-VILKEHFARFINLQRYFVEESEGKDGKKKCKLVKLHPIAAMTPERLENEPDLVLGLSMTPVDMMDIW 520          
BLAST of mRNA_E-fasciculatus_F_contig12110.1647.1 vs. uniprot
Match: A0A7S2KIY8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KIY8_9STRA)

HSP 1 Score: 227 bits (578), Expect = 5.410e-64
Identity = 137/289 (47.40%), Postives = 177/289 (61.25%), Query Frame = 1
Query:    1 RLPPLSRFTTGWKLDEWQKRVLRQVDKKNSAIVCAPTSSGKTIISTYVTVAAGASGKILFVVPTEPLVWQVAALFNKLLRGQQVAICMDQIYYRPDIE--LRTIVGTPMALETALTKLRGPVGDEVV-GKLDYTQMKGGFDFDYAVYDEVHSLDSEEGDALQRLIRAVNCNFLALSATIGNAQQLKDWWTEVQGEQARDLEVIEAPAGAGEGRRGFVPPSGEVYLEEHSGRFINLQRYVW---------MGSTFVNLHPCSAMSVELLQSGRTEEVSLSFTPHDTYKLW 831
            RLPPLSR+   ++L++WQ  VL  +D ++SAIVCAPTSSGKT++STY      A G +LFV+P+E LVWQVAA + +  +G  V IC DQI ++ +I    +  +GTP ALE ALTK R   G E+  G+ ++  + GG++FDY V DEVH+L+  EGDALQR+I A NC  LALSATIGNA QLK W+            V+    G  EG++     S EV L EH  RFINLQRYV          +    V LHP +AM+ E L + R    SLS TP D  +LW
Sbjct:  329 RLPPLSRYNRKFRLEDWQCAVLESIDNRSSAIVCAPTSSGKTLLSTYT--CKSAKGTVLFVLPSEVLVWQVAATYYEFFKGN-VTICTDQIQFQ-EISGGAQVYIGTPKALEKALTKSRACAGQEMTKGEREFMILDGGYNFDYLVLDEVHTLNGPEGDALQRIIHATNCPILALSATIGNATQLKGWFET----------VVNRHFGLIEGQK-----SEEVLLREHFARFINLQRYVVTKEEGKDGKVKQKLVKLHPVAAMTPERLLNERDLVASLSMTPSDMMELW 598          
BLAST of mRNA_E-fasciculatus_F_contig12110.1647.1 vs. uniprot
Match: A0A7S2YA93_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YA93_9STRA)

HSP 1 Score: 225 bits (574), Expect = 8.640e-64
Identity = 129/289 (44.64%), Postives = 181/289 (62.63%), Query Frame = 1
Query:    1 RLPPLSRFTTGWKLDEWQKRVLRQVDKKNSAIVCAPTSSGKTIISTYVTVAAGASGKILFVVPTEPLVWQVAALFNKLLRGQQVAICMDQIYYRPDI-ELRTIVGTPMALETALTKLRGPVGDEVV-GKLDYTQMKGGFD-FDYAVYDEVHSLDSEEGDALQRLIRAVNCNFLALSATIGNAQQLKDWWTEVQGEQARDLEVIEAPAGAGEGRRGFVPPSGEVYLEEHSGRFINLQRYVWMGST---------FVNLHPCSAMSVELLQSGRTEEVSLSFTPHDTYKLW 831
            RLPPLSR+   +KL++WQ  +L  +D++ SA+VCAPTSSGKT++STY      A G +LFV+P+E LVWQVA+ + +  +G  V +C DQI ++    + +  +GTP ALE A+ K+RG  G+E+  G+ ++  + GG+  FDY V DEVH+L+  EGDALQR+I++ NC  LALSATIGNA QL+DW++ V+ E   +  +++AP+           P  +V L+E+  RFINLQRYV   S           V LHP +AM+ E L        SLS TP D   LW
Sbjct:  337 RLPPLSRYNRKFKLEDWQCSILGAIDERRSAVVCAPTSSGKTLLSTYT--CKNAHGTVLFVLPSEVLVWQVASTYYQFFKGN-VTVCTDQISFQEVTGDAQVYIGTPKALERAIAKVRGAAGEEMTKGEREFMILDGGYSQFDYLVLDEVHTLNGPEGDALQRIIKSCNCPVLALSATIGNASQLRDWFSHVRNEHL-EATLVDAPS----------EPPEDVILQEYFARFINLQRYVVTESEGKDGKTKQKLVKLHPVAAMTPERLNDEPELIASLSMTPADMMDLW 611          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12110.1647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZQ4_ECTSI1.780e-18499.28Helicase ATP-binding domain-containing protein n=2... [more]
A0A836CAV0_9STRA5.040e-11063.70P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S4A060_9STRA1.970e-7751.96Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YFT5_AURAN3.900e-6748.57Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A448YY16_9STRA1.080e-6648.44Helicase ATP-binding domain-containing protein n=1... [more]
A0A4D9CYE4_9STRA1.520e-6551.13Helicase ATP-binding domain-containing protein n=2... [more]
A0A7S3P4A9_9STRA2.460e-6546.02Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S3Q8K1_9STRA3.810e-6547.06Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2KIY8_9STRA5.410e-6447.40Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2YA93_9STRA8.640e-6444.64Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12110contigE-fasciculatus_F_contig12110:756..4118 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score551.6
Seed ortholog evalue2.1e-154
Seed eggNOG ortholog2880.D7FZQ4
Preferred nameDDX60
KEGG koko:K20103
GOsGO:0001817,GO:0001819,GO:0002682,GO:0002684,GO:0002697,GO:0002699,GO:0002831,GO:0002833,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003725,GO:0003727,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0008150,GO:0009605,GO:0009607,GO:0009615,GO:0009966,GO:0009967,GO:0010646,GO:0010647,GO:0023051,GO:0023056,GO:0031347,GO:0031349,GO:0032101,GO:0032103,GO:0039531,GO:0039533,GO:0039535,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043900,GO:0043902,GO:0044424,GO:0044444,GO:0044464,GO:0045088,GO:0045089,GO:0045111,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050688,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051239,GO:0051240,GO:0051704,GO:0051707,GO:0065007,GO:0080134,GO:0097159,GO:1900245,GO:1900246,GO:1901363,GO:1902531,GO:1902533
EggNOG free text desc.helicase activity
EggNOG OGsCOG4581@1,KOG0949@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019
Hectar predicted targeting categoryother localisation
Exons6
Model size834
Cds size834
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12110.1647.1prot_E-fasciculatus_F_contig12110.1647.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12110 756..4118 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927721.5631883-CDS-E-fasciculatus_F_contig12110:755..9061622927721.5631883-CDS-E-fasciculatus_F_contig12110:755..906Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12110 756..906 -
1695995665.436404-CDS-E-fasciculatus_F_contig12110:755..9061695995665.436404-CDS-E-fasciculatus_F_contig12110:755..906Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12110 756..906 -
1622927721.5910447-CDS-E-fasciculatus_F_contig12110:1411..15511622927721.5910447-CDS-E-fasciculatus_F_contig12110:1411..1551Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12110 1412..1551 -
1695995665.4532661-CDS-E-fasciculatus_F_contig12110:1411..15511695995665.4532661-CDS-E-fasciculatus_F_contig12110:1411..1551Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12110 1412..1551 -
1622927721.606526-CDS-E-fasciculatus_F_contig12110:2160..22651622927721.606526-CDS-E-fasciculatus_F_contig12110:2160..2265Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12110 2161..2265 -
1695995665.4627328-CDS-E-fasciculatus_F_contig12110:2160..22651695995665.4627328-CDS-E-fasciculatus_F_contig12110:2160..2265Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12110 2161..2265 -
1622927721.6240785-CDS-E-fasciculatus_F_contig12110:2882..30741622927721.6240785-CDS-E-fasciculatus_F_contig12110:2882..3074Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12110 2883..3074 -
1695995665.4739752-CDS-E-fasciculatus_F_contig12110:2882..30741695995665.4739752-CDS-E-fasciculatus_F_contig12110:2882..3074Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12110 2883..3074 -
1622927721.6390233-CDS-E-fasciculatus_F_contig12110:3515..36241622927721.6390233-CDS-E-fasciculatus_F_contig12110:3515..3624Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12110 3516..3624 -
1695995665.4826012-CDS-E-fasciculatus_F_contig12110:3515..36241695995665.4826012-CDS-E-fasciculatus_F_contig12110:3515..3624Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12110 3516..3624 -
1622927721.652697-CDS-E-fasciculatus_F_contig12110:3981..41181622927721.652697-CDS-E-fasciculatus_F_contig12110:3981..4118Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12110 3982..4118 -
1695995665.4915702-CDS-E-fasciculatus_F_contig12110:3981..41181695995665.4915702-CDS-E-fasciculatus_F_contig12110:3981..4118Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12110 3982..4118 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12110.1647.1

>prot_E-fasciculatus_F_contig12110.1647.1 ID=prot_E-fasciculatus_F_contig12110.1647.1|Name=mRNA_E-fasciculatus_F_contig12110.1647.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=278bp
RLPPLSRFTTGWKLDEWQKRVLRQVDKKNSAIVCAPTSSGKTIISTYVTV
AAGASGKILFVVPTEPLVWQVAALFNKLLRGQQVAICMDQIYYRPDIELR
TIVGTPMALETALTKLRGPVGDEVVGKLDYTQMKGGFDFDYAVYDEVHSL
DSEEGDALQRLIRAVNCNFLALSATIGNAQQLKDWWTEVQGEQARDLEVI
EAPAGAGEGRRGFVPPSGEVYLEEHSGRFINLQRYVWMGSTFVNLHPCSA
MSVELLQSGRTEEVSLSFTPHDTYKLW*
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mRNA from alignment at E-fasciculatus_F_contig12110:756..4118-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12110.1647.1 ID=mRNA_E-fasciculatus_F_contig12110.1647.1|Name=mRNA_E-fasciculatus_F_contig12110.1647.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3363bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12110:756..4118- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCTGCCCCCTCTCTCCCGCTTCACCACCGGCTGGAAGCTGGATGAGTG GCAGAAGCGCGTGCTGAGGCAGGTCGACAAGAAGAACTCGGCCATCGTGT GCGCGCCGACCTCCTCTGGGAAGACCATCATCTCCACGTAAGTCCCCGGC TAAACACACACACAAAACCCGTGGCTGCTTGTTTTTCATTAGGAAATGGT CGAGATACCAATACTCGTGCGCGTGCTCACTTCCACGACGGGTGGTTTCT GATTCCATTCCGTGATGAACCAACAATGTATATTCCGGGCCGGCGTCGTG GCCGTTCATATTCCATGAAAGCTCACCAAGTTGCTGCATGAGTTTGCTTT ACGTTATGGGGAATGTCCAATCCGTCGTTCCCCTCGTAAACAGACCGCCC TGTATCCGCCGTTTTCTGGATGCCCTGCTGTGTCTAACGAAACTCTTTAT TCCCAATCATGCGTTTGTATCACTCTCTGCCCATCACGTAATAGGTACGT GACCGTGGCTGCAGGGGCGTCGGGAAAGATCCTGTTTGTGGTGCCCACGG AGCCCCTCGTGTGGCAGGTGGCGGCGCTTTTCAACAAGCTTCTCCGAGGG CAGGTAAGAGCTATTTGTAGTAACTGATGGAACTGCGTTTTTTCTTTTTT GACAATGAGTTGCTGGCTGTCCGCGTGGGCACGTGAGAGGGAGACAGTTA AAAACTGCTGCTGAAGCTGCGGAACTCTTCTGCCGACGAGTTGCTGCCTG TTGGCGTGTGCTGTGTTGCCGCTCTTGATTGGTGAACCCCACTCCCCCGA GTCTCAAGGCCGAAATAGTACGAAGTGATGATGGGTCCGTAGAAGCAAAA CTAAGACAACAAGCCGTTTCAAGGTATGACAGGAACCGACAGCGCGCCGA ATTGTTTTGGGGGCGCCTCTGTGAGGGATAGTAGCTGTTCTCCTTCGTCC CAAAAAAAAAAAGAAAAAAAGAAAAAACGCGTATGAACGAACCACCTAAG CGACGAATAGCTGCGTCACGAGCCCCCCATCACATTTTTCCGAGCAGGTG GCGATCTGCATGGACCAGATCTACTACCGACCGGATATCGAGCTGCGGAC TATCGTGGGCACCCCCATGGCGCTCGAGACGGCTTTGACGAAGCTCAGGG GGCCCGTGGGGGATGAGGTGGTGGGGAAGCTGGACTACACGCAGATGAAG GGGGGCTTCGACTTCGACTACGCCGTGTACGACGAGGTGAGAGAGACATA CCCCAACCCCTAACCCCAAGTAGAGGTGAGCTAGATTTGTGTCTGTTTGT GTTTATTATTAACATCGACCGCGCTAACCGGCTGACCAATGAAAAGACGT CAGTCTCAGTGCGGTTGATTTGTGTGTGTGTGTGTGTGTGTGTGTGTACC TCAGTAGAGGACCCTGTTGTATGGCGGGTGGTATGAATGGTGGGTGTTCG GAGGAAGCGGCGGGTGGAAGTTGGCTGGCACTATCCCCCTCTTCGAGCCA CCCTGCCTCATCGCGGTGTCGAGGACATCATTACCCTATTGCGTCGAGCT GACAGCGTAAACACCTGCAGCGCATACGCAGCCACTGGAAGGCAGAAAGT CGAGCATACCTATTTGCTTTCGAAAGAGTGGCTCGAGCTTGATGTGATGC CCGCATGGCCTACAAATGGACTGTTCTTGGTTGCCCTCAAGGGAAATGTT CGCGTGCAAGCGACACCGTTATCTGGTGGTGCGGCGTCTCGTGGTTCCGC CGTGGCCTTATTTGGCCCTTTGTTGCTGCTGCTGTACTGCTGTACGTCTC TCTCTCTCATGCTTGTCGTGTGATCCTTCTTTTTCGTCTTTGGCTTGCTG CAGGTGCACTCTTTGGACAGCGAAGAGGGCGACGCCCTTCAGCGACTTAT CCGCGCGGTGAACTGCAACTTCCTTGCCCTCTCCGCCACCATCGGAAACG CTCAGCAGGTATACTAAATACAGCATACATGTAGCAGGTATACTATATAC AGCATACATTTAGCAGAGATACGTGCAACGTGTAATGCAACAGCAGTCCG GCAGCGACCGCGGTTTTTGTAAGAGAGAGTCGGGACAAACGTGAACTCAC TCCTCCTTTTTTTTTTATCAAACCCGAATCAAGTTTATTGCTGAAACGAA ACGAAACAAGTTATAACGGGTACCGCAAGTTTTTCGTAAGATATCACACC CCCTGGACCGATTTCGAAGCTTGATTGCTCACAGAAGGAAAAGCAGTGAC GGTGCCCAAAAAGTGGCTGCGTTGGAATCGTGTCGACGAGAGCCTTCCGA AAACGTATCCTTTGATTTCGGCATCCTCGCCGTCGTGGAGTAATGGAGCT AGCTTTGAAAATCGGTCCAGGGGGTGTGATATCTTGTTCTCCCTACGTCT GTGCTTATGTATTTCTAAAAACAAATCCATCTCCCATCCACATATTGTTT GAGGGTCCAGTATAATAAACGCCTGTTGTTGTCTACCCCCCGGCGTTGTT TTATCCCGTAACCTAACCTATGCCCCTTTCCTTGTCCCCGATCGTGTGTC GGCCCCGCTTGGCACAGCTCAAGGACTGGTGGACTGAGGTCCAGGGGGAG CAGGCCAGAGACCTAGAGGTCATCGAAGCGCCGGCGGGGGCGGGGGAGGG CCGAAGGGGCTTCGTGCCTCCGTCGGGGGAGGTATACCTGGAGGAGCACA GCGGCAGGTGACAAGTGACAATGGGACCATTCTGCGTCGCCCCCAGTGCT AAAAAAGCGTCTCTCCAGTGTATCCACGTCTATGATGTATTTCGAGCAAG GCTGCTTTTTTTTTTCAATTTCCTTCTTCAATCATAACACCAGCATTTTT CTCTTTAACAGAGAAGAGAGTCTGGGATCGGTTAGCAATGAATCCACGTT TGCGTCAGCAGGAGCTATCTGTACTTCGTTTTTTTCGCTGCTGCTGTAAC AACAACGCGAGACTTGTGGGGGCGTTCGCGGGCATGTTCCGAAGCAAGCG CCCATGTGGCAGCGTGCCAAAATCGGAGGTTTTGACAATATCGAGGTCTT GCTGTTTCCTCTCTCTGCAGGTAACAAGTACGGTACCGTTGTCCTTAGCC ATAGCCCAGGCCCATCATCAACCCAGGACCTCTTGCTAAACGCATTTTGG AACCCGTCGTGTGCGTTCCCCATCGTGCTTGATCCTCGTTATGGCTTGGG TGCTTGACCCAGGTTCATTAACTTGCAGCGGTACGTGTGGATGGGTTCGA CGTTCGTGAACCTCCACCCTTGCTCCGCGATGTCGGTGGAGCTGCTACAG AGCGGCAGGACGGAGGAGGTATCCCTGTCCTTCACCCCTCACGACACCTA CAAGCTCTGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12110:756..4118-

>mRNA_E-fasciculatus_F_contig12110.1647.1 ID=mRNA_E-fasciculatus_F_contig12110.1647.1|Name=mRNA_E-fasciculatus_F_contig12110.1647.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1668bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12110:756..4118- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCTGCCCCCTCTCTCCCGCTTCACCACCGGCTGGAAGCTGGATGAGTG
GCAGAAGCGCGTGCTGAGGCAGGTCGACAAGAAGAACTCGGCCATCGTGT
GCGCGCCGACCTCCTCTGGGAAGACCATCATCTCCACAGGCTGCCCCCTC
TCTCCCGCTTCACCACCGGCTGGAAGCTGGATGAGTGGCAGAAGCGCGTG
CTGAGGCAGGTCGACAAGAAGAACTCGGCCATCGTGTGCGCGCCGACCTC
CTCTGGGAAGACCATCATCTCCACGTACGTGACCGTGGCTGCAGGGGCGT
CGGGAAAGATCCTGTTTGTGGTGCCCACGGAGCCCCTCGTGTGGCAGGTG
GCGGCGCTTTTCAACAAGCTTCTCCGAGGGCAGGTACGTGACCGTGGCTG
CAGGGGCGTCGGGAAAGATCCTGTTTGTGGTGCCCACGGAGCCCCTCGTG
TGGCAGGTGGCGGCGCTTTTCAACAAGCTTCTCCGAGGGCAGCAGGTGGC
GATCTGCATGGACCAGATCTACTACCGACCGGATATCGAGCTGCGGACTA
TCGTGGGCACCCCCATGGCGCTCGAGACGGCTTTGACGAAGCTCAGGGGG
CCCGTGGGGGATGAGGTGGTGGGGAAGCTGGACTACACGCAGATGAAGGG
GGGCTTCGACTTCGACTACGCCGTGTACGACGAGCAGGTGGCGATCTGCA
TGGACCAGATCTACTACCGACCGGATATCGAGCTGCGGACTATCGTGGGC
ACCCCCATGGCGCTCGAGACGGCTTTGACGAAGCTCAGGGGGCCCGTGGG
GGATGAGGTGGTGGGGAAGCTGGACTACACGCAGATGAAGGGGGGCTTCG
ACTTCGACTACGCCGTGTACGACGAGGTGCACTCTTTGGACAGCGAAGAG
GGCGACGCCCTTCAGCGACTTATCCGCGCGGTGAACTGCAACTTCCTTGC
CCTCTCCGCCACCATCGGAAACGCTCAGCAGGTGCACTCTTTGGACAGCG
AAGAGGGCGACGCCCTTCAGCGACTTATCCGCGCGGTGAACTGCAACTTC
CTTGCCCTCTCCGCCACCATCGGAAACGCTCAGCAGCTCAAGGACTGGTG
GACTGAGGTCCAGGGGGAGCAGGCCAGAGACCTAGAGGTCATCGAAGCGC
CGGCGGGGGCGGGGGAGGGCCGAAGGGGCTTCGTGCCTCCGTCGGGGGAG
GTATACCTGGAGGAGCACAGCGGCAGCTCAAGGACTGGTGGACTGAGGTC
CAGGGGGAGCAGGCCAGAGACCTAGAGGTCATCGAAGCGCCGGCGGGGGC
GGGGGAGGGCCGAAGGGGCTTCGTGCCTCCGTCGGGGGAGGTATACCTGG
AGGAGCACAGCGGCAGGTTCATTAACTTGCAGCGGTACGTGTGGATGGGT
TCGACGTTCGTGAACCTCCACCCTTGCTCCGCGATGTCGGTGGAGCTGCT
ACAGAGCGGCAGGACGGAGGAGGTATCCCTGTCCTTCACCCCTCACGACA
CCTACAAGCTCTGGTGAGTTCATTAACTTGCAGCGGTACGTGTGGATGGG
TTCGACGTTCGTGAACCTCCACCCTTGCTCCGCGATGTCGGTGGAGCTGC
TACAGAGCGGCAGGACGGAGGAGGTATCCCTGTCCTTCACCCCTCACGAC
ACCTACAAGCTCTGGTGA
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