mRNA_E-fasciculatus_F_contig1211.1646.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1211.1646.1 vs. uniprot
Match: D7G8K0_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8K0_ECTSI) HSP 1 Score: 650 bits (1677), Expect = 4.750e-229 Identity = 382/592 (64.53%), Postives = 388/592 (65.54%), Query Frame = 1
Query: 1 MLMDACGCDLPDEGRRADVSGRGLVSVVGEDMSFFVRLQAVDAGDNSLPFDSFLDLPRLDELRLPCNNIRDIDGRKILAQLQFGGGDGKSGTGYGQLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLADLPVAMARFPALQKLSLERNQLESDAAFDVLSRLPGLRELNLAFNYFTGINLDPGIAEQAFPLLEALDLGFNFIGSERDVVVVVLFERLQRLILYGNPLAGPTGEDSLGLCVEKLIAESDRIRGDYANYPIEVITELPRIRQTRGXXXXXXXXXXRPYGDTGVTMVDEGCLPPASAFRDAGNRSLFRFERKPSGDGSGDGDAPDDNIVEATLRLARESKNRATLAASR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VDEVLTSMGAGMDRMVLENRARENNNGAQA-KPELSTIIRTVNAVLDETEY 1230
MLMDACGCDLPDEGRRADVSGRGLVSVV EDMSFFVRLQAVDAGDNSLPFDSFLDLPRL+ELRLPCN+IRDIDGRKIL QLQ GGGDG SG GYGQLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGL DLPVAMARFP LQKLSLERNQLESDA FDVLSRLPGLRELNLAFNYFTGINLD IAEQAFPLLEALDLGFNFIGSE DVVVVVLFERLQRLILYGNPLAGPTGEDSLGLCVEKL+AESDRIRGDYA+ PIEVITELPRIRQTRGXXXXXXXXXXRPY DTGVTMVDEGCLPPAS FRD+GNR+LFRFERKPSG SGDGDAPDDNIVEATLRLARESKNR LAASR VDEVLTSMGAGMDRMVLE RARENNNG QA KPELS IIRTVN VLDETEY
Sbjct: 1 MLMDACGCDLPDEGRRADVSGRGLVSVVREDMSFFVRLQAVDAGDNSLPFDSFLDLPRLEELRLPCNSIRDIDGRKILTQLQLGGGDGNSGNGYGQLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLVDLPVAMARFPVLQKLSLERNQLESDAVFDVLSRLPGLRELNLAFNYFTGINLDLDIAEQAFPLLEALDLGFNFIGSESDVVVVVLFERLQRLILYGNPLAGPTGEDSLGLCVEKLVAESDRIRGDYASCPIEVITELPRIRQTRGXXXXXXXXXXRPYCDTGVTMVDEGCLPPASTFRDSGNRTLFRFERKPSGS-SGDGDAPDDNIVEATLRLARESKNRVALAASRSAAKAAAIGVQDCTFLTSVERQQEDNHDAGPAANGGATDERENEAGADVGRLLGQEAGAVNGMSTRLLRGPIDPMVRGDPVKLRMALTTLRYTLKHPVTSSLDVQWQKQXXXXXXXXXXXLTRGKDCGAGRKTAAARARQLPRRPYQLLKPSHQVGFCARLLDEPTKDGRGGGGGDGVLGRVDEVLTSMGAGMDRMVLEKRARENNNGTQAAKPELSAIIRTVNEVLDETEY 591
BLAST of mRNA_E-fasciculatus_F_contig1211.1646.1 vs. uniprot
Match: A0A836C9W6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9W6_9STRA) HSP 1 Score: 238 bits (606), Expect = 2.150e-67 Identity = 147/374 (39.30%), Postives = 199/374 (53.21%), Query Frame = 1
Query: 4 LMDACGCDLPDEGRRADVSGRGLVSVVGEDMSFFVRLQAVDAGDNSLPFDSFLDLPRLDELRLPCNNIRDIDGRKILAQLQFGGGDGKSGTGYGQLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLADLPVAMARFPALQKLSLERNQLESDAAFDVLSRLPGLRELNLAFNYFTGINLDPGIAEQAFPLLEALDLGFNFIGSERDVVVVVLFERLQRLILYGNPLAGPTGEDSLGLCVEKLIAESDRIRGDYANYPIEVITELPRIRQTRGXXXXXXXXXXRPYGDTGVTMVDEGCLPPASAFRDAGNRSLFRFERKPSGDGSGDGDAPDDNIVEATLRLARESKNRATLAASRVDEV--LTSMGAGMD 1119
+++ G DLPD RR+D+SG VV +D+ +F +LQ +DAGDNSL F L +L ELRL CN I + Y L RLDLSYN+LSG A++ L LP L LDL+CNGL LP +A P L+ L LERNQLE L+ LP LREL+LAFNYF I EALDL FN+IG++ D + +VL +L R+ILYGNPL GP+GED G+ +E L +DR R ++ +E ITE+PR + R +T+V E +P + + GN+++F+FE S + A +I ATLR K R+ A R ++ LT++ G D
Sbjct: 162 ILEGSGVDLPDGARRSDISGGNFTEVVQDDLGYFNKLQELDAGDNSLSLSCFACLQQLHELRLQCNGITAPPAPPLPP------------ASYPALTRLDLSYNALSGAAIAQLAQLPVLKYLDLSCNGLTSLPAELAALPCLECLVLERNQLEGGEVMATLATLPVLRELSLAFNYFAAI--------------EALDLAFNYIGAQADAMPLVLLPKLARVILYGNPLCGPSGEDLSGITIEGLEDAADRARDGWSVPLLEFITEMPRPKHERAGLKNSRRRMYCEMTRAPITLVSEAPVPASRDLKATGNKAVFKFEEARSDN------AAAMDIATATLRAME--KQRSVEAQRRAQDLTFLTAIDMGGD 501
BLAST of mRNA_E-fasciculatus_F_contig1211.1646.1 vs. uniprot
Match: A0A7S3XTX8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTX8_HETAK) HSP 1 Score: 232 bits (592), Expect = 9.000e-66 Identity = 136/324 (41.98%), Postives = 181/324 (55.86%), Query Frame = 1
Query: 4 LMDACGCDLPDEGRRADVSGRGLVSVVGEDMSFFVRLQAVDAGDNSLPFDSFLDLPRLDELRLPCNNIRDIDGRKILAQLQFGGGDGKSGTGYGQLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLADLPVAMARFPALQKLSLERNQLESDAAFDVLSRLPGLRELNLAFNYFTGINLDPG--IAEQAFPLLEALDLGFNFIGSERDVVVVVLFERLQRLILYGNPLAGPTGEDSLGLCVEKLIAESDRIRGDYANYPIEVITELPRIRQTRGXXXXXXXXXXRPYGDTGVTMVDEGCLPPASAFRDAGNRSLFRFERK 969
L+ A G PDE RRAD SG+G V D+ +FVRL +D +N L + F LPRL +LRL N + + ++ GY L RLDLSYN++ AL L LP L LDLT NGLA+LP A+A F L+ L+LE NQ + + VL+ +P LREL LAFN+ I+ P AE FP L+ LDL FN++ +ERDV+ + L R+ILYGNPLAGPTGED G CV + + ++R R ++ P+EV+ E PR R RPY D +VDE LP FR+AGNR + +++
Sbjct: 105 LLQAAGVQFPDEARRADASGKGYEEVNTADLGYFVRLATLDVSENHLALEWFCRLPRLKDLRLAYNGLTALGPQE----------------GYPALMRLDLSYNAVEPAALGCLAALPRLRALDLTSNGLAELPDALAGFHTLEILTLEHNQFDGEIPL-VLAEIPKLRELYLAFNF---IDTAPAECAAEGQFPALDLLDLAFNYVAAERDVLPLAALPVLTRVILYGNPLAGPTGEDPAGACVRRFLHLAERARQGWSARPLEVVLEQPRRRAAE-------RVNRRPYRDVETVVVDEAPLPTGGEFREAGNRLMLGRQKR 401
BLAST of mRNA_E-fasciculatus_F_contig1211.1646.1 vs. uniprot
Match: A0A7S4E570_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E570_9STRA) HSP 1 Score: 172 bits (437), Expect = 4.780e-44 Identity = 117/335 (34.93%), Postives = 167/335 (49.85%), Query Frame = 1
Query: 1 MLMDACGCDLPDEGRRADVSGRGLVSVVGEDMSFFVRLQAVDAGDNS-LPFDSFLDLPRLDELRLPCNNIRDIDGRKILAQLQFGGGDGKSGTGYGQLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLADLPVAMARFPALQKLSLERNQLESDAAFDVLSRLPGLRELNLAFNYFTGINLDPGIAE-------QAFPLLEALDLGFNFIGSERDVVVVVLFERLQRLILYGNPLAGPTGEDSLGLCVEKLIAESDRIRGDYANYPIEVITELPRIRQTRGXXXXXXXXXX-RPYGDTGVTMVDEGCLPPASAFRDAGNRSLFRFERKPSG 978
+L+DACG + PDEG RADVSGR V D+ +F L VDA DN LP + F LPRL +LR N+ + + + S + +L LDLSYN+ + +S L +P L DLDLT NGL +LP + F +L+KL LERN+L+ D + +D +AE + L ALDL N I SE+D+ + + +L++L LYGNPL G TGED G V L+ + + R + ++V TE+PR R RG R + GV + E +P A+ FR+ G+++L K +G
Sbjct: 127 LLLDACGVEFPDEGHRADVSGRHATEVSSTDLEYFPNLSWVDASDNPRLPLEDFGSLPRLKDLRFAANSW------SVCSSV--------SEDWFPRLLVLDLSYNTATLDGISQLVTMPRLRDLDLTGNGLVELPDVFSDFQSLEKLFLERNRLQGDXXXXXXXXXXXXXXXXXXXXVTSTPTID-AMAEATSLDHTEILAELVALDLAHNHIRSEKDIDDLTVLPKLEQLSLYGNPLLGATGEDPTGETVRTLVQTATQQRDGWTARHLDVTTEVPRKRPNRGTAGAAAGAKCDRRFERIGVQRIAEAPIPTAAQFREKGHQALVDALEKEAG 446
BLAST of mRNA_E-fasciculatus_F_contig1211.1646.1 vs. uniprot
Match: F0YEQ3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEQ3_AURAN) HSP 1 Score: 142 bits (357), Expect = 6.620e-33 Identity = 110/333 (33.03%), Postives = 147/333 (44.14%), Query Frame = 1
Query: 1 MLMDACGCDLPDEGRRADVSGRGLVSVVGEDMSFFVRLQAVDAGDNSLPFDSFLDLPRLDELRLPCNNIRDIDGRKILAQLQFGGGDGKSGTGYGQLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLADLPVAMARFPALQKLSLERNQLE--SDAAFD-----VLSRLPGLRELNLAFNYFTGINLDPGIAEQA-------FPLLEALDLGFNFIGSERDVVVVVLFERLQRLILYGNPLAGPTGEDSLGLCVEKLIAESDRIRGDYANYPIEVITELPRIRQTRGXXXXXXXXXX-RPYGDTGVTMVDEGCLPPASAFRDAGNRSLF 954
+L++ACG + PDEG RADVSG SV D+ +F RL +D DN LP F LPRL ELR N + D + + Q +L+ LDLSYN+L A++ L + DA D LS L LREL+LA N TG +AE F L AL+L +N I +E DV+ + L +L+ L LYGNPL GP ED+ G V + R + + +EV TE+PR R RG R + + +T V E +P A+ FR GNR+L
Sbjct: 74 LLLEACGVEFPDEGHRADVSGYAASSVSETDLEYFPRLATLDCSDNCLPLAPFGKLPRLKELRFAANGLERFDWPQGSSAWQ-------------RLQVLDLSYNALGVQAVTNLAGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDAQDDCGNVCALSGLTRLRELSLAHNKLTGFPTLDAVAEATKVSETAIFVELVALNLAWNKIHTEGDVMGLTLLPKLEHLALYGNPLLGPAKEDASGGSVRNFAECAADARDGWTDRLLEVSTEVPRRRAPRGSMAAATNARGDRRFRNVSLTRVPEPPIPTAAEFRARGNRALL 393
BLAST of mRNA_E-fasciculatus_F_contig1211.1646.1 vs. uniprot
Match: A0A7S0N1X0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N1X0_9CHLO) HSP 1 Score: 103 bits (258), Expect = 1.330e-20 Identity = 79/237 (33.33%), Postives = 113/237 (47.68%), Query Frame = 1
Query: 4 LMDACGCDLPDEGRRADVSGRGLVSVVGEDMSFFVRLQAVDAGDNSLP-FDSFLDLPRLDELRLPCNNIRDIDGRKILAQLQFGGGDGKSGTGYGQLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLADLPVAM---ARFPALQKLSL--ERNQLESDAAFDVLSRLPGLRELNLAFNYFTGINLDPGIAEQAFPLLEALDLGFNFIGSERDVVVVVLFERLQRLILYGNPLA 696
L+ ACG +LP+ + + G+ V V ED+ FV LQ +D GDN LP +LP L L++ CN+ L+ LQ G + L L+L YN L AL L LP+L +LD++ N + P FPAL+ L L + ++ + L LP LR L + N N D + FP L LDL N + E D+V V L++++L+G PLA
Sbjct: 85 LVGACGVELPEAVQTVSLMGKNYVDVEVEDLHHFVCLQDLDVGDNQLPGMHCLAELPVLRTLKMQCNS---------LSTLQIEPGS------FHTLETLELCYNCLGADALLQLATLPNLRELDVSFNCINRPPSEQFPSEAFPALETLHLGGQTPKMAPSVVYR-LGHLPRLRALRVPNNNIQSFNPDK-VRPDMFPALGLLDLADNRVEVEDDIVAFVQCPELEKVVLWGTPLA 304
BLAST of mRNA_E-fasciculatus_F_contig1211.1646.1 vs. uniprot
Match: A0A7S2S8V5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8V5_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 2.460e-16 Identity = 44/105 (41.90%), Postives = 62/105 (59.05%), Query Frame = 1
Query: 499 PGLRELNLAFNYFTGINLDPGIAEQAFPLLEALDLGFNFIGSERDVVVVVLFERLQRLILYGNPLAGPTGEDSLGLCVEKLIAESDRIRGDYANYPIEVITELPR 813
P L+EL+L FNY T + FP L L+L FN+I SE D+V VV +L+ L++YGNPL GPTGED G +E L +R Y+ ++++TE P+
Sbjct: 1 PQLQELHLGFNYLT-VFPRAATGVDRFPCLHTLNLAFNYIASEDDLVPVVHLHKLEMLVIYGNPLLGPTGEDPSGTSIEYLAQCLLDVRTGYSTRALDILTEKPK 104
BLAST of mRNA_E-fasciculatus_F_contig1211.1646.1 vs. uniprot
Match: W6KNS6_9TRYP (Uncharacterized protein n=1 Tax=Phytomonas sp. isolate EM1 TaxID=134006 RepID=W6KNS6_9TRYP) HSP 1 Score: 91.7 bits (226), Expect = 6.680e-16 Identity = 74/262 (28.24%), Postives = 115/262 (43.89%), Query Frame = 1
Query: 4 LMDACGCDLPDEGRRADVSGRGLVSVVGEDMSFFVRLQAVDAGDNSLPFDSFLDLPRLDELRLPCNNIRDIDGRKILAQLQFGGGDGKSGTGYG---------------------QLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLADLPVAMARFPALQKLSLERNQLESDA-------AFDVLSRLPGLRELNLAFN---YFTGINLDPGIAEQAFPLLEALDLGFN-FIGSERDVVVVVLFERLQRLILYGNPL 693
+++A G D P+ + L + V ED+SFF +L +D +NSL + + L L+ L + CN I + G + Q Q GT G L L+LSYN + G LS+L H P L LDL+ N + LP ++ + +LE NQ S F LS +P L E+NL N + +++ G FP +E + + N F +E V + L L++++L NP+
Sbjct: 168 ILNAAGTDNPEAVEAVTLQCSYLTNSVPEDLSFFTKLVFLDVSENSLNVEDLVALTSLETLHIACNKISSLAGINWVLQQQRQDSGAPDGTECGPSASATLGTSKSLSLHDVLLPNLTALNLSYNRIPAGHLSLLVHFPCLEKLDLSGNDIKVLPRDLSFLTGVTHFALENNQFRSSLDKGDKSDVFQSLSTMPSLVEVNLNHNQLFHVPPLSMHSGRG-LCFPSIEIIGVADNQFQLTEGLVELGHLHRTLRQIVLTNNPI 428
BLAST of mRNA_E-fasciculatus_F_contig1211.1646.1 vs. uniprot
Match: A0A7S2Y223_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y223_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 2.320e-15 Identity = 39/104 (37.50%), Postives = 62/104 (59.62%), Query Frame = 1
Query: 658 RLQRLILYGNPLAGPTGEDSLGLCVEKLIAESDRIRGDYANYPIEVITELPRIRQTRGXXXXXXXXXXRPYGDTGVTMVDEGCLPPASAFRDAGNRSLFRFERK 969
++ R+ILYGNP+AGP+GED G CV+ +A +++ R + P+EV+ E PR + + RPY D +V+E +P A+ F++AGN+ L+ RK
Sbjct: 7 QVTRIILYGNPIAGPSGEDPSGACVQGFLATAEQFRHGWIERPLEVVLEEPRQKVSE-------RVNRRPYRDVETVVVNEKPIPSAAQFKEAGNKRLYEGRRK 103
BLAST of mRNA_E-fasciculatus_F_contig1211.1646.1 vs. uniprot
Match: A0A078A4A4_STYLE (Leucine rich repeat family protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078A4A4_STYLE) HSP 1 Score: 89.4 bits (220), Expect = 4.160e-15 Identity = 73/256 (28.52%), Postives = 125/256 (48.83%), Query Frame = 1
Query: 4 LMDACGCDLPDEGRRADVSGRGLVSVVGEDMSFFVRLQAVDAGDNSLPFDSFLDLPRLDELR------LPCNNIRDIDGRKILAQLQFGGGDGKSGTGYG--QLRRLDLSYNSLSGGALSVLTHLPSLTDLDLTCNGLADLPVAMARFPALQKLSLERNQLESDAA-------FDVLSRLPGLRELNLAFNYFTGINLDP-GIAEQAFPLLEALDLGFNFIGSERDVVVVVLFERLQRLILYGNPL----AGPTGE 711
++ +C LP E +A++ + + D+SFF L +DA DN L +S ++L +L L+ L N+I + + + D T +G L + L+YN++ ++ L LP L LDL+ N L+ +P ++ L++L+L N S + F L+ +P +++LNL++N GI+ + I + F L LDL +N I S+ D++ F+ L L L GNP+ G TG+
Sbjct: 241 ILYSCRVKLPHEAIKANLQSLCINIINQNDLSFFNNLSYLDASDNQL--NSQIELIKLGMLKNLTHINLAYNHINSLQFLQECHLMLQNQKDVSVKTYFGLISLETIGLAYNNIPINSIHFLKFLPKLKVLDLSSNYLSQVPDDLSYLLNLEELNLSHNLFSSHTSIYNPNKFFMALASIPRIKKLNLSYNKLEGIHYEEMQIKKVNFHKLTELDLSYNIITSQEDLLYCQNFQNLILLTLAGNPIFETQEGKTGD 494 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1211.1646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1211.1646.1 >prot_E-fasciculatus_F_contig1211.1646.1 ID=prot_E-fasciculatus_F_contig1211.1646.1|Name=mRNA_E-fasciculatus_F_contig1211.1646.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=411bp MLMDACGCDLPDEGRRADVSGRGLVSVVGEDMSFFVRLQAVDAGDNSLPFback to top mRNA from alignment at E-fasciculatus_F_contig1211:15394..17993- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1211.1646.1 ID=mRNA_E-fasciculatus_F_contig1211.1646.1|Name=mRNA_E-fasciculatus_F_contig1211.1646.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2600bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1211:15394..17993- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1211:15394..17993- >mRNA_E-fasciculatus_F_contig1211.1646.1 ID=mRNA_E-fasciculatus_F_contig1211.1646.1|Name=mRNA_E-fasciculatus_F_contig1211.1646.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2466bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1211:15394..17993- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |