mRNA_E-fasciculatus_F_contig1211.1645.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1211.1645.1
Unique NamemRNA_E-fasciculatus_F_contig1211.1645.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1211.1645.1 vs. uniprot
Match: D7G8K1_ECTSI (SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8K1_ECTSI)

HSP 1 Score: 241 bits (614), Expect = 7.080e-71
Identity = 128/152 (84.21%), Postives = 135/152 (88.82%), Query Frame = 3 
Query:    3 NAYREARTAPDSPPELVKALIYRVTVKRILARQLEMVEAAISFVQDIAAVRDQFQSSDENDKDVGHENGPSMVSAPVSSSRLDHLVASPPLPPSRPSQPPLSTGASSTTGGGIEYNCHQHHSQSHRFSLATAIDSPSFLSYLSDVESVVVYQ 458
            NAYREART+PDS PEL  ALIYRVTVKRILARQLEM EAA +FVQ+IAAVRDQFQSSDEN K  GHENG SMVSAPVSSSRLDHL+ASPP PPSR S PPLST ASSTTGGGIE  CHQHH QSHRFSLAT IDSPSF+SYL+DVESV+VYQ
Sbjct:  554 NAYREARTSPDSSPELATALIYRVTVKRILARQLEMAEAANAFVQNIAAVRDQFQSSDENGKGAGHENGSSMVSAPVSSSRLDHLLASPPSPPSRLSSPPLSTRASSTTGGGIENKCHQHHLQSHRFSLATGIDSPSFVSYLADVESVIVYQ 705
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BLAST of mRNA_E-fasciculatus_F_contig1211.1645.1 vs. uniprot
Match: A0A6H5JC99_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC99_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 6.460e-30
Identity = 72/107 (67.29%), Postives = 78/107 (72.90%), Query Frame = 3 
Query:  138 DIAAVRDQFQSSDENDKDVGHENGPSMVSAPVSSSRLDHLVASPPLPPSRPSQPPLSTGASSTTGGGIEYNCHQHHSQSHRFSLATAIDSPSFLSYLSDVESVVVYQ 458
            DIAAVRDQFQSSDEN + VGHENGPSMVSAPVSSSRLDHL+A                      GGGIE  CHQHH QS RFSLAT IDSPSF+SYL+DVESV+VY+
Sbjct:  627 DIAAVRDQFQSSDENGEGVGHENGPSMVSAPVSSSRLDHLLAPXXXXXXXXXXXXXXXXXXXXXGGGIENECHQHHLQSPRFSLATGIDSPSFVSYLADVESVIVYK 733
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1211.1645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8K1_ECTSI7.080e-7184.21SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JC99_9PHAE6.460e-3067.29SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1211contigE-fasciculatus_F_contig1211:13719..14838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.4
Seed ortholog evalue8.5e-45
Seed eggNOG ortholog2880.D7G8K1
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K19199
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,map00310
EggNOG free text desc.peptidyl-lysine monomethylation
EggNOG OGsKOG1337@1,KOG1337@2759
EC2.1.1.43
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSET domain and Rubisco LSMT substrate-binding domain protein
Ec32 orthologEc-14_003300.1
Exons2
Model size853
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1211.1645.1prot_E-fasciculatus_F_contig1211.1645.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1211 13826..14491 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927721.2958848-UTR-E-fasciculatus_F_contig1211:13718..138251622927721.2958848-UTR-E-fasciculatus_F_contig1211:13718..13825Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1211 13719..13825 +
1695995665.3464634-UTR-E-fasciculatus_F_contig1211:13718..138251695995665.3464634-UTR-E-fasciculatus_F_contig1211:13718..13825Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1211 13719..13825 +
1622927721.3401701-UTR-E-fasciculatus_F_contig1211:14491..148381622927721.3401701-UTR-E-fasciculatus_F_contig1211:14491..14838Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1211 14492..14838 +
1695995665.3772151-UTR-E-fasciculatus_F_contig1211:14491..148381695995665.3772151-UTR-E-fasciculatus_F_contig1211:14491..14838Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1211 14492..14838 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927721.3125253-CDS-E-fasciculatus_F_contig1211:13825..138551622927721.3125253-CDS-E-fasciculatus_F_contig1211:13825..13855Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1211 13826..13855 +
1695995665.3615859-CDS-E-fasciculatus_F_contig1211:13825..138551695995665.3615859-CDS-E-fasciculatus_F_contig1211:13825..13855Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1211 13826..13855 +
1622927721.327215-CDS-E-fasciculatus_F_contig1211:14122..144911622927721.327215-CDS-E-fasciculatus_F_contig1211:14122..14491Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1211 14123..14491 +
1695995665.3692846-CDS-E-fasciculatus_F_contig1211:14122..144911695995665.3692846-CDS-E-fasciculatus_F_contig1211:14122..14491Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1211 14123..14491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1211.1645.1

>prot_E-fasciculatus_F_contig1211.1645.1 ID=prot_E-fasciculatus_F_contig1211.1645.1|Name=mRNA_E-fasciculatus_F_contig1211.1645.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=133bp
MVEAAISFVQDIAAVRDQFQSSDENDKDVGHENGPSMVSAPVSSSRLDHL
VASPPLPPSRPSQPPLSTGASSTTGGGIEYNCHQHHSQSHRFSLATAIDS
PSFLSYLSDVESVVVYQGKVLPPPLQRADQND*
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mRNA from alignment at E-fasciculatus_F_contig1211:13719..14838+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1211.1645.1 ID=mRNA_E-fasciculatus_F_contig1211.1645.1|Name=mRNA_E-fasciculatus_F_contig1211.1645.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1120bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1211:13719..14838+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAACGCGTACCGGGAAGCGCGAACAGCACCGGACTCTCCCCCCGAGCTG
GTAAAAGCTTTGATCTACCGAGTCACGGTCAAGCGGATTCTGGCGCGGCA
GCTGGAGATGGTCGAAGCAGCCATTTCGTTTGTTCAGGTGACATAATGAG
AGAGCATTGCCTCCGTGTGCAGTTTGAGCGCTCCGTCTGCTGTCCTTGCC
CATGGTACAGAGGTGTCGCTTTCGGCTGGTCACGCGGGAGGGAGGCGCTC
TATGCGCCAACAAGTATGTAAAGTATGCCACTAAGAATTGCCGTATGCTT
TGTGTTGACACGCTTACAAGAGATGGCAGTGGAAATCCAACCGCCTTGCC
TTCATCCTTAGCGCGATACATCCCTCCCTCCTGCTGAAAACGCCCACTTA
CCAGGACATCGCTGCTGTGCGGGATCAGTTTCAGTCCTCGGACGAGAATG
ACAAGGACGTGGGGCACGAGAACGGGCCGTCGATGGTATCTGCTCCGGTT
TCTTCATCCCGCTTGGACCATCTCGTGGCGTCCCCGCCTTTGCCACCGTC
ACGTCCGTCACAGCCGCCGCTCTCAACCGGGGCATCATCGACGACCGGCG
GTGGCATCGAATACAATTGCCACCAGCATCACAGTCAGAGCCATCGTTTC
TCCCTGGCAACGGCGATCGATTCGCCGTCCTTCTTATCGTACTTGTCGGA
CGTCGAGAGTGTGGTAGTCTACCAAGGAAAGGTGCTACCACCGCCGCTTC
AGCGTGCCGACCAGAATGACTAGAAGGCGCTTTTGCCGCCGCAGTGTACA
GCATCGGAGAGGCCAACGCGGTGGAATTCAGGGATTCGAAGAATGCGTTA
ATGAAGAATACGTCCCTCCCCAGGTCCTGTGGTGTCAGATGTAGATGGTT
AAGTAGTGAGAGCTGTCGTTTCTACAGCGAGCGATGGTAAGTCCAAACAT
GTCATTGTCTTGTTTCAACTGTACGCAACTACAATAGCCAGGGAATTTCC
CTTGCTGCAGGAATGGACCGACCTTGTTGTTCCTAACCCCCTGGATTTTT
CGTTCAAGATATCCAAGTAGACCTGGGTGTACCGTGTGCCACCGTCATGA
TATTAGGCGGCCGTAGATGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1211:13719..14838+

>mRNA_E-fasciculatus_F_contig1211.1645.1 ID=mRNA_E-fasciculatus_F_contig1211.1645.1|Name=mRNA_E-fasciculatus_F_contig1211.1645.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=798bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1211:13719..14838+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTCGAAGCAGCCATTTCGTTTGTTCAGATGGTCGAAGCAGCCATTTC
GTTTGTTCAGGACATCGCTGCTGTGCGGGATCAGTTTCAGTCCTCGGACG
AGAATGACAAGGACGTGGGGCACGAGAACGGGCCGTCGATGGTATCTGCT
CCGGTTTCTTCATCCCGCTTGGACCATCTCGTGGCGTCCCCGCCTTTGCC
ACCGTCACGTCCGTCACAGCCGCCGCTCTCAACCGGGGCATCATCGACGA
CCGGCGGTGGCATCGAATACAATTGCCACCAGCATCACAGTCAGAGCCAT
CGTTTCTCCCTGGCAACGGCGATCGATTCGCCGTCCTTCTTATCGTACTT
GTCGGACGTCGAGAGTGTGGTAGTCTACCAAGGAAAGGTGCTACCACCGC
CGCTTCAGCGTGCCGACCAGAATGACTAGGACATCGCTGCTGTGCGGGAT
CAGTTTCAGTCCTCGGACGAGAATGACAAGGACGTGGGGCACGAGAACGG
GCCGTCGATGGTATCTGCTCCGGTTTCTTCATCCCGCTTGGACCATCTCG
TGGCGTCCCCGCCTTTGCCACCGTCACGTCCGTCACAGCCGCCGCTCTCA
ACCGGGGCATCATCGACGACCGGCGGTGGCATCGAATACAATTGCCACCA
GCATCACAGTCAGAGCCATCGTTTCTCCCTGGCAACGGCGATCGATTCGC
CGTCCTTCTTATCGTACTTGTCGGACGTCGAGAGTGTGGTAGTCTACCAA
GGAAAGGTGCTACCACCGCCGCTTCAGCGTGCCGACCAGAATGACTAG
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