mRNA_E-fasciculatus_F_contig12109.1642.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12109.1642.1
Unique NamemRNA_E-fasciculatus_F_contig12109.1642.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12109.1642.1 vs. uniprot
Match: D8LJF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF1_ECTSI)

HSP 1 Score: 286 bits (733), Expect = 5.700e-87
Identity = 141/145 (97.24%), Postives = 144/145 (99.31%), Query Frame = 1 
Query:    1 GMYERRLAFLDDLIELLRVPSDQLEGVFTGMLGQHIHCQRSVQHALQVVLCLRADGSTVPGGVSKWADEDNWMGGDAIVLTADTAEIEPFHRVFRRPLSLLRADPTPLVAPTVLNRASDGGRRQSAAPLPAAKDATHDNNSGNPS 435
            GMYERRLAFLDDL+ELLRVPSDQLEGVFTGMLG+HIHCQRSVQHALQVVLCLRADGSTVPGGVSKWADEDNWMGGDAIVLTADTAEIEPFHRVFRRPLSLLRADPTPLVAPTVLNRASDGGRRQSAAPLPAAKDATHDN +GNPS
Sbjct: 1428 GMYERRLAFLDDLLELLRVPSDQLEGVFTGMLGRHIHCQRSVQHALQVVLCLRADGSTVPGGVSKWADEDNWMGGDAIVLTADTAEIEPFHRVFRRPLSLLRADPTPLVAPTVLNRASDGGRRQSAAPLPAAKDATHDNTTGNPS 1572
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BLAST of mRNA_E-fasciculatus_F_contig12109.1642.1 vs. uniprot
Match: A0A6H5KJ77_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ77_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 1.310e-55
Identity = 97/103 (94.17%), Postives = 99/103 (96.12%), Query Frame = 1 
Query:   76 GVFTGMLGQHIHCQRSVQHALQVVLCLRADGSTVPGGVSKWADEDNWMGGDAIVLTADTAEIEPFHRVFRRPLSLLRADPTPLVAPTVLNRASDGGRRQSAAP 384
            GVFTGML QHIHCQRSVQHALQVVLCLRADGSTVP  VS+WADEDNWMGGDAIVLTAD AEIEPFHRVFRRPLSLLRADPTPLVAPTVLNRASDGGRR+SAAP
Sbjct: 1320 GVFTGMLRQHIHCQRSVQHALQVVLCLRADGSTVPVEVSEWADEDNWMGGDAIVLTADMAEIEPFHRVFRRPLSLLRADPTPLVAPTVLNRASDGGRRKSAAP 1422
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12109.1642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJF1_ECTSI5.700e-8797.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJ77_9PHAE1.310e-5594.17C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12109contigE-fasciculatus_F_contig12109:25..2301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size437
Cds size432
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12109.1642.1prot_E-fasciculatus_F_contig12109.1642.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12109 25..2298 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927720.8358984-CDS-E-fasciculatus_F_contig12109:24..2011622927720.8358984-CDS-E-fasciculatus_F_contig12109:24..201Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12109 25..201 -
1695995665.032045-CDS-E-fasciculatus_F_contig12109:24..2011695995665.032045-CDS-E-fasciculatus_F_contig12109:24..201Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12109 25..201 -
1622927720.851701-CDS-E-fasciculatus_F_contig12109:856..9731622927720.851701-CDS-E-fasciculatus_F_contig12109:856..973Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12109 857..973 -
1695995665.0525942-CDS-E-fasciculatus_F_contig12109:856..9731695995665.0525942-CDS-E-fasciculatus_F_contig12109:856..973Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12109 857..973 -
1622927720.8683953-CDS-E-fasciculatus_F_contig12109:1635..17001622927720.8683953-CDS-E-fasciculatus_F_contig12109:1635..1700Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12109 1636..1700 -
1695995665.0612025-CDS-E-fasciculatus_F_contig12109:1635..17001695995665.0612025-CDS-E-fasciculatus_F_contig12109:1635..1700Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12109 1636..1700 -
1622927720.8798413-CDS-E-fasciculatus_F_contig12109:2225..22981622927720.8798413-CDS-E-fasciculatus_F_contig12109:2225..2298Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12109 2226..2298 -
1695995665.070223-CDS-E-fasciculatus_F_contig12109:2225..22981695995665.070223-CDS-E-fasciculatus_F_contig12109:2225..2298Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12109 2226..2298 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927720.8895867-UTR-E-fasciculatus_F_contig12109:2298..23011622927720.8895867-UTR-E-fasciculatus_F_contig12109:2298..2301Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12109 2299..2301 -
1695995665.0799086-UTR-E-fasciculatus_F_contig12109:2298..23011695995665.0799086-UTR-E-fasciculatus_F_contig12109:2298..2301Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12109 2299..2301 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12109.1642.1

>prot_E-fasciculatus_F_contig12109.1642.1 ID=prot_E-fasciculatus_F_contig12109.1642.1|Name=mRNA_E-fasciculatus_F_contig12109.1642.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=144bp
MYERRLAFLDDLIELLRVPSDQLEGVFTGMLGQHIHCQRSVQHALQVVLC
LRADGSTVPGGVSKWADEDNWMGGDAIVLTADTAEIEPFHRVFRRPLSLL
RADPTPLVAPTVLNRASDGGRRQSAAPLPAAKDATHDNNSGNPS
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mRNA from alignment at E-fasciculatus_F_contig12109:25..2301-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12109.1642.1 ID=mRNA_E-fasciculatus_F_contig12109.1642.1|Name=mRNA_E-fasciculatus_F_contig12109.1642.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2277bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12109:25..2301- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGATGTACGAGCGACGGCTTGCGTTCTTGGACGATTTGATTGAGCTCCT
GCGCGTGCCCTCGGATCAGCTTGAAGGTTGGTGGTGCAGTGTCCGTCGTG
AGTTCTCGTCTCGAGGGGGCATTTTTAAAAGAAAAAATACAAGTACAAAC
ACCGAAAGACTACCCGTTCGAGAAAAAGCCACAGTCGAAGGGGACGTGTT
GGAAGTATTTTGTTGTTGCTGATTTTGGTCTGTTGCGATGTTTGCCGTGG
GCGAGGTTCGTGTTCGTTGTCGTCGTTGTCCCTATCTTTGTTCGCGATAG
GGTACGAGGTAGAGGTCGTAAGTGCCGATGGTGCTGCTGTAGTTTGCAAG
CTACGTGTCGGTGCCGGGGCTGCTGCTGTGCTTTTGTTTTTAGTTTCCCG
CAATCGTCTAATTCGACACTCCTATCGATTTTTTTATTTTTTGTGCTGAA
ACTAATAGGGGTTCTCTTGTTTGTTTGTATGTGTAAAGGGCTTTGGTTGT
CATTGTTCGGCCATGCTCATCGTCCGCACGCAAACCCAAGACAACGCCAT
GCCATGCCATGTACGGACTGCTCTTCTCTTCGTCGTGCGTGTGTGTGTCA
GGCGTGTTCACTGGCATGCTGGGACAACACATACACTGCCAGCGGTCGGT
TCAGCACGCCTTGCAGGTGAGCTGATTCATCAAGAGTCATCAACTACAGC
AGTACATATTACAATATTGCTGTTGTCACGGTCTTGCTTAGCTTGTCCGC
TCCGTTCTTTCTGCAGTTAAGAGCTACCTCTCCCGGGTTTTCCCACGGTA
ATTTTGATTTAATTTTTACTTTTTTTTATTATTGTCATCACTTTAAGTCA
GCGCTCGCACAACATTTCTGCCGATAGGCGCTCGCTCCAATCCTTGGTGT
CCTTATCCCAACCGGAAATACCGTACCGGTTTTATTTCTGTTGGTTTTTC
TGGGAATGTGTGCCCTGTTGTGGGAAGTTGGCTTGTGACCACGGAAGGCG
TCCACGTCAGTTGGACCGGAACGGCGGATGTTAGACGGTACGGGTGTTAG
ACGGTACGGGTGTTAGACGGTGCTTAGCAGAGACCGGAATGGTTGTAAGT
GTGAAGACAACGCACAACAACAAACACAATCCGTGTATGTCGCAGATACC
GACACTGAATGAGCACCGTCAAGGATTTACTGCAAAAGCCGTGAAAGCTT
CCTGAAAACCGTCAAGGTTGCATGGAAAACCATAAACGACGTTGCCGCTG
ACAACGAACCGCCATCGTTACGGAAATCCGTCAAATGTTTCATACCGTAC
CGTACCGTACCGTACTGTACCGCGAAAGGTGGTGCTCTGCCTGCGCGCGG
ACGGAAGCACGGTACCCGGAGGGGTATCCAAGTGGGCTGACGAGGACAAT
TGGATGGGTGGCGACGCGATCGTTCTAACAGCTGACACGGCCGAGGTGTG
TACAAATATTGTGTGCAAGGCTTGCCTCCATCCTCCATAGCGGGCTGGCT
CACCATACATTAGAGCATAGTATAGCAGTGTCATCATGGCGTGATGCAAG
ATGAAAGTAAAAAAAAGAATGTGTTGGTATGCTTTGAGTGACGCTTCCCA
AGCTCGAGCAGCTAACGAATTTTTTACAAGGACGAGCCCAGGGAACCTAA
ATGAACCAAAAAAATATTGTACAAACACAGCAGTCTTCCGTATGTTTGAC
GATCATCGTGAGACAACAGCAGGTGCGCATCATGCTGCACGATTGATTGC
ATCAATGCCAAGGTGTGCATCCGGAATGGTTGGTTTGTTGTGGCACCTAA
GGTAGGGTATGGAATGCAGGACTCCGTGCGCTGTGTGACTGGATGAAACG
TACGCGGACAAGACGGAGCCTGCCGGTGGGGCCCCATGTGATCCGGTACG
GCAGAGTGTGTCGTTCGATTCTTGCGTCCCGTCCTTCGCCGCGTGGCCAC
TACGGCCATCACCGCCCGCCACCGCAATCATCCCGTTTCCGTCATTTCAC
CATTCCGTTGCGCCCGATCCAGCTTCACCTGTCATTGGCATCGCCATCAT
TCCGCTCTCATCATCACCCCAATTCGATCGTTCCATTTTTTCGTCATCAG
ATCGAGCCGTTCCACCGGGTATTCCGGCGGCCCCTGTCCCTCCTACGGGC
GGACCCGACACCCCTCGTCGCACCCACGGTGCTTAACCGGGCATCCGACG
GCGGCCGGCGCCAGTCCGCTGCCCCCCTCCCCGCCGCAAAGGACGCCACG
CACGACAACAACAGTGGAAACCCTTCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12109:25..2301-

>mRNA_E-fasciculatus_F_contig12109.1642.1 ID=mRNA_E-fasciculatus_F_contig12109.1642.1|Name=mRNA_E-fasciculatus_F_contig12109.1642.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=864bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12109:25..2301- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTACGAGCGACGGCTTGCGTTCTTGGACGATTTGATTGAGCTCCTGCG
CGTGCCCTCGGATCAGCTTGAAGATGTACGAGCGACGGCTTGCGTTCTTG
GACGATTTGATTGAGCTCCTGCGCGTGCCCTCGGATCAGCTTGAAGGCGT
GTTCACTGGCATGCTGGGACAACACATACACTGCCAGCGGTCGGTTCAGC
ACGCCTTGCAGGCGTGTTCACTGGCATGCTGGGACAACACATACACTGCC
AGCGGTCGGTTCAGCACGCCTTGCAGGTGGTGCTCTGCCTGCGCGCGGAC
GGAAGCACGGTACCCGGAGGGGTATCCAAGTGGGCTGACGAGGACAATTG
GATGGGTGGCGACGCGATCGTTCTAACAGCTGACACGGCCGAGGTGGTGC
TCTGCCTGCGCGCGGACGGAAGCACGGTACCCGGAGGGGTATCCAAGTGG
GCTGACGAGGACAATTGGATGGGTGGCGACGCGATCGTTCTAACAGCTGA
CACGGCCGAGATCGAGCCGTTCCACCGGGTATTCCGGCGGCCCCTGTCCC
TCCTACGGGCGGACCCGACACCCCTCGTCGCACCCACGGTGCTTAACCGG
GCATCCGACGGCGGCCGGCGCCAGTCCGCTGCCCCCCTCCCCGCCGCAAA
GGACGCCACGCACGACAACAACAGTGGAAACCCTTCCATCGAGCCGTTCC
ACCGGGTATTCCGGCGGCCCCTGTCCCTCCTACGGGCGGACCCGACACCC
CTCGTCGCACCCACGGTGCTTAACCGGGCATCCGACGGCGGCCGGCGCCA
GTCCGCTGCCCCCCTCCCCGCCGCAAAGGACGCCACGCACGACAACAACA
GTGGAAACCCTTCC
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