mRNA_E-fasciculatus_F_contig12101.1640.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12101.1640.1
Unique NamemRNA_E-fasciculatus_F_contig12101.1640.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12101.1640.1 vs. uniprot
Match: D8LPV2_ECTSI (Nucleotidyltransferase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV2_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 1.580e-59
Identity = 95/115 (82.61%), Postives = 105/115 (91.30%), Query Frame = 1 
Query:    1 TPATCSRNLRPPWYRESSVEQGFPLRTLHNEILDLCDLLMPTPKEKANTAIAITYVRQAVEEALGSEAKVKIFGSQLTGLVLPSSDIDTVVMGGPRGSIDKLGPAMYRRQNKGEV 345
            T +   RNLRPPWYRESSVEQGFPLRTLHNEILDLCDLLMPTP+EKA TAIAITY+++ VEE LGSEA+V+IFGSQLTGLVLPSSDID+VV+GGPRGS+  LG AMYRRQNKGEV
Sbjct:  238 TDSNSRRNLRPPWYRESSVEQGFPLRTLHNEILDLCDLLMPTPEEKAKTAIAITYIKRVVEETLGSEARVEIFGSQLTGLVLPSSDIDSVVLGGPRGSLGSLGAAMYRRQNKGEV 352
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12101.1640.1 vs. uniprot
Match: A0A6H5K966_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K966_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 1.690e-56
Identity = 93/115 (80.87%), Postives = 104/115 (90.43%), Query Frame = 1 
Query:    1 TPATCSRNLRPPWYRESSVEQGFPLRTLHNEILDLCDLLMPTPKEKANTAIAITYVRQAVEEALGSEAKVKIFGSQLTGLVLPSSDIDTVVMGGPRGSIDKLGPAMYRRQNKGEV 345
            T +   RN+RPPWYRESSVEQGFPLRTLHNEILDLCDLLMPTP+EKA TAIAITY+++ V+E LGSEAKV+IFGSQLTGLVLPSSDID+VV+GGPR +I  LG AMYRRQNKGEV
Sbjct:  159 TDSKSRRNIRPPWYRESSVEQGFPLRTLHNEILDLCDLLMPTPEEKAKTAIAITYIKRVVKENLGSEAKVEIFGSQLTGLVLPSSDIDSVVLGGPRSAIGSLGAAMYRRQNKGEV 273
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12101.1640.1 vs. uniprot
Match: A0A835YW64_9STRA (PAP-associated domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW64_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.010e-20
Identity = 47/105 (44.76%), Postives = 62/105 (59.05%), Query Frame = 1 
Query:   31 PPWYRESSVEQGFPLRTLHNEILDLCDLLMPTPKEKANTAIAITYVRQAVEEALGSEAKVKIFGSQLTGLVLPSSDIDTVVMGGPRGSIDKLGPAMYRRQNKGEV 345
            PPW+R         L TLHNEILD CDL+ PT  E  +   A+ +V Q  E+ LG+   V +FGS LT L++PSSD+D V+M  P  +I  L   + RR N GE+
Sbjct:   37 PPWFRHEHWCPENVLVTLHNEILDFCDLVKPTKAEHEDAERALNFVTQVAEQVLGNGVAVHVFGSHLTKLLVPSSDLDLVIMNAPSNAIHLLSRDLRRRSNTGEI 141
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12101.1640.1 vs. uniprot
Match: A0A161YKG9_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A161YKG9_DAUCS)

HSP 1 Score: 73.6 bits (179), Expect = 8.130e-13
Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:   19 RNLRPPWYRESSVEQGFPLRTLHNEILDLCDLLMPTPKEKANTAIAITYVRQAVEEALGSEAKVKIFGSQLTGLVLPSSDIDTVVMG 279
            R L   W+R SS  +  P+  LH EILD C+ L PTP+E+A+ + A+  V   V+    S  +V++FGS  TGL LPSSDID V+MG
Sbjct:   85 RTLEGNWFRSSSRFKS-PMLQLHQEILDFCEFLSPTPEEEASRSAAVKSVFDVVKYIWPS-CEVEVFGSFKTGLYLPSSDIDVVIMG 169
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12101.1640.1 vs. uniprot
Match: A0A7S2XW69_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW69_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.100e-12
Identity = 43/100 (43.00%), Postives = 59/100 (59.00%), Query Frame = 1 
Query:   16 SRNLRPPWYRESSVEQGFPLRTLHNEILDLCDLLMPTPKEKANTAIAITYVRQAVEEALG---SEAKVKIFGSQLTGLVLPSSDIDTVVMG-GPRGSIDK 303
            S N   PW RE +     PL +LHNEIL LCDLL+PT  EK      + ++ + + E +     E  V +FGS+LT L LP+SD+D VV+G G R ++ K
Sbjct:   40 SENEVVPWMREQTSMDS-PLISLHNEILSLCDLLLPTAAEKEARQDVVEWITEFITEKVWPKEEEVCVSVFGSELTKLALPASDVDLVVLGLGARETMGK 138
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12101.1640.1 vs. uniprot
Match: A0A6J0PK18_ELAGV (inactive non-canonical poly(A) RNA polymerase protein Trf4-2 isoform X1 n=4 Tax=Arecaceae TaxID=4710 RepID=A0A6J0PK18_ELAGV)

HSP 1 Score: 72.4 bits (176), Expect = 2.060e-12
Identity = 37/87 (42.53%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:   16 SRNLRPPWYRESSVEQGFPLRTLHNEILDLCDLLMPTPKEKANTAIAITYVRQAVEEALGSEAKVKIFGSQLTGLVLPSSDIDTVVM 276
            +R L   W+R  S  +  P+  LH EILD CD + PTP+E+A+ A A+  V + ++  +   +KV++FGS  TGL LP+SDID V++
Sbjct:   81 NRALEQAWFRAGSRFKS-PMLQLHKEILDFCDFVSPTPEERASRAAAVQCVFEIIKH-IWPHSKVEVFGSFRTGLYLPTSDIDVVIL 165
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12101.1640.1 vs. uniprot
Match: A0A7S2H591_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H591_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.570e-12
Identity = 37/86 (43.02%), Postives = 56/86 (65.12%), Query Frame = 1 
Query:   22 NLRPPWYRESSVEQGFPLRTLHNEILDLCDLLMPTPKEKANTAIAITYVRQAVEEALGSEAKVKIFGSQLTGLVLPSSDIDTVVMG 279
            +L+PPW++        PL  LHNEIL  CDL+ PT  E+ + A  ++ +R  V++ +  EA++ ++GS LTGL LPSSD+D  V+G
Sbjct:   45 SLQPPWHKPRKPGAS-PLTVLHNEILRFCDLISPTQAEEDSRAEVVSDIRALVKK-VWPEAELFVYGSTLTGLCLPSSDLDFAVLG 128
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12101.1640.1 vs. uniprot
Match: A0A6I9TES8_SESIN (non-canonical poly(A) RNA polymerase PAPD5 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9TES8_SESIN)

HSP 1 Score: 71.2 bits (173), Expect = 5.220e-12
Identity = 45/113 (39.82%), Postives = 64/113 (56.64%), Query Frame = 1 
Query:    1 TPATCSRNLRPPWYRESSVEQGFPLRTLHNEILDLCDLLMPTPKEKANTAIAITYVRQAVEEALGSEAKVKIFGSQLTGLVLPSSDIDTVVMGG----PRGSIDKLGPAMYRR 327
            TPA   R L   W+R +   +  P+  LH EILD CD L PTP+E+ +   AI  V   ++  +   A+V++FGS  TGL LPSSDID V++G     P+  +  L  A+ +R
Sbjct:   84 TPAA-ERTLEGHWFRANCRFKS-PMLQLHKEILDFCDFLSPTPEEQESRNAAIESVFNVIKY-IWPNAEVEVFGSFKTGLYLPSSDIDVVILGSNVRSPQIGLQALSRALSQR 193
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12101.1640.1 vs. uniprot
Match: A0A2R6QBT4_ACTCC (Non-canonical poly(A) RNA polymerase n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6QBT4_ACTCC)

HSP 1 Score: 71.2 bits (173), Expect = 5.260e-12
Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 1 
Query:   19 RNLRPPWYRESSVEQGFPLRTLHNEILDLCDLLMPTPKEKANTAIAITYVRQAVEEALGSEAKVKIFGSQLTGLVLPSSDIDTVVMGG----PRGSIDKLGPAMYRR 327
            R L   W+R +   +  PL  LH EILD CD L PTP+EKA+   A+  V   V   +    KV++FGS  TGL LP+SDID V++G     P+  +  L  A+ +R
Sbjct:   87 RTLEGGWFRANCRFKS-PLLQLHKEILDFCDFLSPTPEEKASRNAAVESVFGVVRY-IWPNCKVEVFGSFKTGLYLPTSDIDVVILGSDIKTPQIGLQALTRALSQR 191
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12101.1640.1 vs. uniprot
Match: A0A7J7C2H3_TRIWF (Non-canonical poly(A) RNA polymerase PAPD5 isoform X1 n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7C2H3_TRIWF)

HSP 1 Score: 71.2 bits (173), Expect = 5.270e-12
Identity = 40/117 (34.19%), Postives = 65/117 (55.56%), Query Frame = 1 
Query:    4 PATCSRNLRP----PWYRESSVEQGFPLRTLHNEILDLCDLLMPTPKEKANTAIAITYVRQAVEEALGSEAKVKIFGSQLTGLVLPSSDIDTVVMGG----PRGSIDKLGPAMYRRQ 330
            P T  R + P     W+   +     P+  LH EI+D CD L PTP+E+A+ ++A+  V   ++  +    +V++FGS  TGL LP+SDID V++G     P+  +  L  A+ +R+
Sbjct:   91 PVTPVRGIEPRLESSWWFGGNSRFKSPMLQLHKEIVDFCDFLSPTPEEQASRSMAVECVYDVIKY-IWPNCRVEVFGSFKTGLYLPTSDIDVVILGSGIRNPQPGLQALSRALSQRE 206
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12101.1640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPV2_ECTSI1.580e-5982.61Nucleotidyltransferase family protein n=1 Tax=Ecto... [more]
A0A6H5K966_9PHAE1.690e-5680.87Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A835YW64_9STRA2.010e-2044.76PAP-associated domain-containing protein n=1 Tax=T... [more]
A0A161YKG9_DAUCS8.130e-1347.13Uncharacterized protein n=1 Tax=Daucus carota subs... [more]
A0A7S2XW69_9STRA1.100e-1243.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6J0PK18_ELAGV2.060e-1242.53inactive non-canonical poly(A) RNA polymerase prot... [more]
A0A7S2H591_9STRA3.570e-1243.02Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A6I9TES8_SESIN5.220e-1239.82non-canonical poly(A) RNA polymerase PAPD5 n=1 Tax... [more]
A0A2R6QBT4_ACTCC5.260e-1241.12Non-canonical poly(A) RNA polymerase n=1 Tax=Actin... [more]
A0A7J7C2H3_TRIWF5.270e-1234.19Non-canonical poly(A) RNA polymerase PAPD5 isoform... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12101contigE-fasciculatus_F_contig12101:1602..4017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.8
Seed ortholog evalue5.7e-48
Seed eggNOG ortholog2880.D8LPV2
KEGG koko:K03514,ko:K11700
KEGG Pathwayko03018,map03018
KEGG ModuleM00393
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0003824,GO:0004652,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005844,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007080,GO:0008150,GO:0008152,GO:0008608,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0019219,GO:0019222,GO:0022402,GO:0030702,GO:0030880,GO:0031047,GO:0031048,GO:0031123,GO:0031124,GO:0031134,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031379,GO:0031380,GO:0032991,GO:0034641,GO:0035770,GO:0036464,GO:0040029,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045495,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050000,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060255,GO:0060293,GO:0061695,GO:0065007,GO:0070566,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098813,GO:0140014,GO:1901360,GO:1902494,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1990141,GO:1990234,GO:1990758,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG1906@2759
EC2.7.7.19
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSANT/Myb and nucleotidyltransferase domain protein
Ec32 orthologEc-18_002600.1
Exons3
Model size360
Cds size360
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12101.1640.1prot_E-fasciculatus_F_contig12101.1640.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12101 1602..4017 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927720.7341366-CDS-E-fasciculatus_F_contig12101:1601..17471622927720.7341366-CDS-E-fasciculatus_F_contig12101:1601..1747Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12101 1602..1747 +
1695995664.9894636-CDS-E-fasciculatus_F_contig12101:1601..17471695995664.9894636-CDS-E-fasciculatus_F_contig12101:1601..1747Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12101 1602..1747 +
1622927720.7514656-CDS-E-fasciculatus_F_contig12101:2586..26751622927720.7514656-CDS-E-fasciculatus_F_contig12101:2586..2675Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12101 2587..2675 +
1695995665.0026045-CDS-E-fasciculatus_F_contig12101:2586..26751695995665.0026045-CDS-E-fasciculatus_F_contig12101:2586..2675Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12101 2587..2675 +
1622927720.7623913-CDS-E-fasciculatus_F_contig12101:3892..40171622927720.7623913-CDS-E-fasciculatus_F_contig12101:3892..4017Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12101 3893..4017 +
1695995665.0114567-CDS-E-fasciculatus_F_contig12101:3892..40171695995665.0114567-CDS-E-fasciculatus_F_contig12101:3892..4017Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12101 3893..4017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12101.1640.1

>prot_E-fasciculatus_F_contig12101.1640.1 ID=prot_E-fasciculatus_F_contig12101.1640.1|Name=mRNA_E-fasciculatus_F_contig12101.1640.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=120bp
TPATCSRNLRPPWYRESSVEQGFPLRTLHNEILDLCDLLMPTPKEKANTA
IAITYVRQAVEEALGSEAKVKIFGSQLTGLVLPSSDIDTVVMGGPRGSID
KLGPAMYRRQNKGEVGWTG*
back to top

mRNA from alignment at E-fasciculatus_F_contig12101:1602..4017+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12101.1640.1 ID=mRNA_E-fasciculatus_F_contig12101.1640.1|Name=mRNA_E-fasciculatus_F_contig12101.1640.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2416bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12101:1602..4017+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACTCCGGCCACTTGCAGCCGCAACCTCCGCCCGCCGTGGTATCGTGAGTC
TAGCGTGGAGCAAGGGTTTCCCCTTCGTACGTTGCACAACGAGATACTCG
ACCTGTGCGACTTGCTCATGCCCACGCCGAAGGAGAAGGCCAACACGTGA
GTGATCCTGCTGCATACCTCGCCATGCTTGGCCATTTTCTTTGAACAGCT
GTTGGTTGGGTTGGTGTGACTGCTGTCCCGCAGAAGGAAAGCGGAGAAGA
ACAACTGTGACGTGAGTGATGCCTCCTTGGCCTTGCCTTGCCTTGCTCGT
GTTCTTTTTTTTTTTTTTTGTGTTGGCGTGTTGGTGTGACTGTACAAGCA
GAAGGAAGGGGGGCGGGGAGAAAAGTCCTGTGTGAGGTGAGAGATACCTC
GCCTTGCCTTGCCTTGCCTTGCCTTGCTCGCGTTCTATGTTTTTTTTGTG
GTATTGTTGGTGTGTTGGTGAGACTGTACAAGCAGGAGGAAGGAAGGCAG
AGAAAGCACTCGTGTGTGAGGTGAGAGATGCCTCGCCATGCCTTGTTGGC
GTTCTCCTTTGCTGCTTGTCTTGCTCCGTGATCATTACCGTACCTTATTT
TGGTTGTGATCGTTGTTTTGTTGTTTATGGTATTGACAAAAGAAGTGAAA
AATTGTCGTTGTTAGGCAAACTCTAAGAGGGTTGTCCACCGACGCTCTGT
GCACTATGCAAACGTCAGGAGCGAAAAAAATCAGACGAATAAAATGCTTG
GGGGCGATGAGTGTTGCAGCACCGCTTGTCGTCTTTGTCTCGTCGTCGTT
GTTGTCGTTGCTCTTGACCGCTTCGCTTCTAGTATTTGGAGAAAAAAATG
CAAAAACAGAAAGACTGCCCGTTCGAGGTATAACCACAGTAGTCGAAGAT
GTGTACGTTCGGGGACAATTTTCTGATTTTTGGCGACCGTTTCTGTAACT
AACACCAACCAATACCAATGCAAACCGACCGACAGGGCCATCGCCATCAC
GTACGTCAGGCAAGCGGTGGAGGAAGCCCTCGGTTCAGAGGCCAAAGTGA
AGATATTCGGCTCGCAGCTAACGGGTACGTCGTCTCATTCCGCCACGGCT
TCAACGCCTGTCGTGGTGTGTGTGTTTTGAATCAGCATTGACCGCGCAAA
CCGGCTGACCGGCGAAAAGATAGCTGTGTGTAGTGTTGTGTGGTTGTGTG
TATGTTTTTTTTTTCTCTTTCTCCAGTTTCATCAATATTTGTTACAACAA
CAACGATTCCCCAACGGCATATACCCTGTTTCTCTCCGCTTTCGTGGATG
CTTTTTTTTTTTTTTTTCATTTTCTCGTCGATATATTTTCATGTCAACCC
CCCTTCCGTGAGAGCAGCCCCCTCGGTATCGTGTACTGCCCGCCGTAGAC
ATTTCCAGCATCTCTCTGAGGTTGTTTTATAGCCAAGCCCACGTGTATGT
TGCCTGTCTGTGTTTTTTTTTTAGTTTGAATCCAACGTGCACTAACCGGC
TGGCCAATGTCGATGTGTGTGTGCATGTGTGTGATTTTTCTTATTTCTCT
GCTGTTTCAATACTGTATTTCAACAAGACATTCATTCCCCACGGGTACCC
CTGGTTGTTAAACTGTATACTACCCACCGTACAATGGAGATTTCGAGATT
TCCTCCAGCCTCGCTCCCTGTGTTGTTTTATGTTTTATTGCCAGGCAGGC
CCCTTCGACGTATTTGTCATATGCGTGTGTATGTTCTTTCGAAGTAGCAT
CGACTGCGCTAACCGGCTGACCAACGAAAATAATAAAAAAAAAAAAGATG
CCACACCACACACGGGGAGGGGAGCCAGATAACATTTTTTTTTTGTTCTA
CCTTCATTTTCCGGCCCTCGCCTTCAATGTTATCAGGAGAAAGGTTCAGC
CTCTCCTTCCCTATATTCATAACGACACCAACGACGAAAAACTAGTATTT
TTATGCTGGCAACAACGACGACGACGACAACGACATCAACAACGACGATA
TTATAGCTGTTTATATCATAACAACGACGATAGCTGTTTATACGATAACA
ACGACGATATTATAGCTGTTTATACGATAACAACGACGATAGCTGTCTAT
ACGATAACAACGACGATATTATAGCTGTTTATACGATAGCAACGACGATA
GCTGTTTATACGATAACAACGACGATAGCTGTTTATACTATATAGATGCC
AGCAACAACAACGAAGGCCTACAGTGACTCCTACGATAATTATTTACACG
ACGCTAACGACAGCATTAACAACCGCCAACACCACCTGCAGGTCTGGTTC
TGCCCAGCAGCGACATCGACACGGTGGTCATGGGCGGCCCTCGGGGATCG
ATCGACAAGCTCGGGCCTGCCATGTACCGAAGGCAGAACAAGGGAGAGGT
AGGCTGGACTGGATAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12101:1602..4017+

>mRNA_E-fasciculatus_F_contig12101.1640.1 ID=mRNA_E-fasciculatus_F_contig12101.1640.1|Name=mRNA_E-fasciculatus_F_contig12101.1640.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=720bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12101:1602..4017+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACTCCGGCCACTTGCAGCCGCAACCTCCGCCCGCCGTGGTATCGTGAGTC
TAGCGTGGAGCAAGGGTTTCCCCTTCGTACGTTGCACAACGAGATACTCG
ACCTGTGCGACTTGCTCATGCCCACGCCGAAGGAGAAGGCCAACACACTC
CGGCCACTTGCAGCCGCAACCTCCGCCCGCCGTGGTATCGTGAGTCTAGC
GTGGAGCAAGGGTTTCCCCTTCGTACGTTGCACAACGAGATACTCGACCT
GTGCGACTTGCTCATGCCCACGCCGAAGGAGAAGGCCAACACGGCCATCG
CCATCACGTACGTCAGGCAAGCGGTGGAGGAAGCCCTCGGTTCAGAGGCC
AAAGTGAAGATATTCGGCTCGCAGCTAACGGGGCCATCGCCATCACGTAC
GTCAGGCAAGCGGTGGAGGAAGCCCTCGGTTCAGAGGCCAAAGTGAAGAT
ATTCGGCTCGCAGCTAACGGGTCTGGTTCTGCCCAGCAGCGACATCGACA
CGGTGGTCATGGGCGGCCCTCGGGGATCGATCGACAAGCTCGGGCCTGCC
ATGTACCGAAGGCAGAACAAGGGAGAGGTAGGCTGGACTGGATAGGTCTG
GTTCTGCCCAGCAGCGACATCGACACGGTGGTCATGGGCGGCCCTCGGGG
ATCGATCGACAAGCTCGGGCCTGCCATGTACCGAAGGCAGAACAAGGGAG
AGGTAGGCTGGACTGGATAG
back to top