mRNA_E-fasciculatus_F_contig121.1637.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig121.1637.1
Unique NamemRNA_E-fasciculatus_F_contig121.1637.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig121.1637.1 vs. uniprot
Match: A0A6H5KQW8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQW8_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.950e-25
Identity = 66/110 (60.00%), Postives = 81/110 (73.64%), Query Frame = 3 
Query: 2151 KKTKKWAFCFHPVSLTLGITSALRAEGLNKVLKLRVNRYSTLRHLDEALWKVEHNLQLESERVSLGGNNDKVLLQHPS*SNGVVGVMLKFVELIGTALRSVGASTLALDV 2480
            +K +KWAFCF+P +LTLGITS  R E +N VLK  ++RYS+L  LD AL  VE  L LESER    GNNDKVL++HP+ S+GV+G MLKF E IG AL+ +GAS  ALDV
Sbjct:  203 RKREKWAFCFNPGALTLGITSTQRVERMNAVLKHLISRYSSLSRLDAALETVEAKLHLESER----GNNDKVLMKHPTWSSGVLGTMLKFFEPIGQALKQLGASNYALDV 308
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BLAST of mRNA_E-fasciculatus_F_contig121.1637.1 vs. uniprot
Match: A0A6H5KWM8_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWM8_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 9.780e-13
Identity = 56/157 (35.67%), Postives = 81/157 (51.59%), Query Frame = 3 
Query: 1908 VIFNDAQ*DMTS---------LPLYCIWHTIQNIIKPCTSVPQGRFA--EMLDHFKKVAYCAAPQMFATHWSHVLGVVRGTGVESYTADFIFKKTKKWAFCFHPVSLTLGITSALRAEGLNKVLKLR-VNRYSTLRHLDEALWKVEHNLQLESERVS 2342
            VI  DA   MT+         L L+C+WH  +N+ K C+S      A  +ML  F++ AY A P+ FAT  + +  +V G   E Y  D I  KTK WAFC+ P  +TLG+ +  R EGL  V K   V +  +L  L + L  V   + +E+ R++
Sbjct:  279 VILTDADLAMTAAIASCWPDTLHLHCLWHIFKNVRKNCSSSFPDNDAKTDMLRTFRRAAYAATPEAFATQAARLKTLVAGKKCEDYMTDLITNKTK-WAFCWRPTVVTLGMVATQRTEGLFGVAKRSGVEKKLSLCALWDRLQHVSKMIAIETARLA 434
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig121.1637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQW8_9PHAE1.950e-2560.00SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KWM8_9PHAE9.780e-1335.67MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig121contigE-fasciculatus_F_contig121:17169..21948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue2e-13
Seed eggNOG ortholog2880.D7FLF6
EggNOG OGs2CMGX@1,2QQB8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size3259
Cds size453
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig121.1637.1prot_E-fasciculatus_F_contig121.1637.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig121 18041..19202 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927720.1562161-UTR-E-fasciculatus_F_contig121:17168..180401622927720.1562161-UTR-E-fasciculatus_F_contig121:17168..18040Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig121 17169..18040 -
1695995664.7432861-UTR-E-fasciculatus_F_contig121:17168..180401695995664.7432861-UTR-E-fasciculatus_F_contig121:17168..18040Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig121 17169..18040 -
1622927720.2285888-UTR-E-fasciculatus_F_contig121:19202..192291622927720.2285888-UTR-E-fasciculatus_F_contig121:19202..19229Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig121 19203..19229 -
1695995664.7945943-UTR-E-fasciculatus_F_contig121:19202..192291695995664.7945943-UTR-E-fasciculatus_F_contig121:19202..19229Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig121 19203..19229 -
1622927720.2525928-UTR-E-fasciculatus_F_contig121:19402..197621622927720.2525928-UTR-E-fasciculatus_F_contig121:19402..19762Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig121 19403..19762 -
1695995664.8056567-UTR-E-fasciculatus_F_contig121:19402..197621695995664.8056567-UTR-E-fasciculatus_F_contig121:19402..19762Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig121 19403..19762 -
1622927720.2669094-UTR-E-fasciculatus_F_contig121:20401..219481622927720.2669094-UTR-E-fasciculatus_F_contig121:20401..21948Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig121 20402..21948 -
1695995664.8159835-UTR-E-fasciculatus_F_contig121:20401..219481695995664.8159835-UTR-E-fasciculatus_F_contig121:20401..21948Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig121 20402..21948 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927720.1702318-CDS-E-fasciculatus_F_contig121:18040..180921622927720.1702318-CDS-E-fasciculatus_F_contig121:18040..18092Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig121 18041..18092 -
1695995664.7546988-CDS-E-fasciculatus_F_contig121:18040..180921695995664.7546988-CDS-E-fasciculatus_F_contig121:18040..18092Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig121 18041..18092 -
1622927720.189836-CDS-E-fasciculatus_F_contig121:18243..184261622927720.189836-CDS-E-fasciculatus_F_contig121:18243..18426Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig121 18244..18426 -
1695995664.765173-CDS-E-fasciculatus_F_contig121:18243..184261695995664.765173-CDS-E-fasciculatus_F_contig121:18243..18426Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig121 18244..18426 -
1622927720.2026083-CDS-E-fasciculatus_F_contig121:18693..187761622927720.2026083-CDS-E-fasciculatus_F_contig121:18693..18776Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig121 18694..18776 -
1695995664.7752397-CDS-E-fasciculatus_F_contig121:18693..187761695995664.7752397-CDS-E-fasciculatus_F_contig121:18693..18776Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig121 18694..18776 -
1622927720.2157862-CDS-E-fasciculatus_F_contig121:19067..192021622927720.2157862-CDS-E-fasciculatus_F_contig121:19067..19202Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig121 19068..19202 -
1695995664.783839-CDS-E-fasciculatus_F_contig121:19067..192021695995664.783839-CDS-E-fasciculatus_F_contig121:19067..19202Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig121 19068..19202 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig121.1637.1

>prot_E-fasciculatus_F_contig121.1637.1 ID=prot_E-fasciculatus_F_contig121.1637.1|Name=mRNA_E-fasciculatus_F_contig121.1637.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=151bp
MTSLPLYCIWHTIQNIIKPCTSVPQGRFAEMLDHFKKVAYCAAPQMFATH
WSHVLGVVRGTGVESYTADFIFKKTKKWAFCFHPVSLTLGITSALRAEGL
NKVLKLRVNRYSTLRHLDEALWKVEHNLQLESERVSLGGNNDKVLLQHPS
*
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mRNA from alignment at E-fasciculatus_F_contig121:17169..21948-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig121.1637.1 ID=mRNA_E-fasciculatus_F_contig121.1637.1|Name=mRNA_E-fasciculatus_F_contig121.1637.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4780bp|location=Sequence derived from alignment at E-fasciculatus_F_contig121:17169..21948- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCAATTAGACACCGCATTGAATGTATTACCCGAGCACGCCAGGTTCTTG
GTGCGGAGACGGAGACACGAGCACTGTGTGTGATTGTTTGTGTGTTTGTG
TGTCTATGTTCTTGACCTCGAATGATTCGTGGTTGTACTTGTTCTTGCGG
AGTTAATTGTTGCATGCCGTGCGTGTTCCAACGTCGTTCGTAGCGAGGAA
CCTTCATCGTCATGCTTATTGTTTGCGATGTTTTCAGGCGTCTGTCATGA
CACACACGCACCAACCTTCAAAAGAGACAAGGCCGAAACAACTGTCCGCA
GATTAGGTGGAGGCGGAACGAGATGCCATTCCAGAGTTCTGCAAGACGCG
CCTGTCCCCCGCCCAGATAGTCGAACATCTCGAAAGGAATGGCGCCACCC
TTGATCACGACGGGAAGCAGCAGGTGACACCGCTCGGATATTTTGGACGT
TGTAGGTGTGTACCGTAAACTACGGCGTTATCTGGGGTATTACAGATTCC
CCCCCCCTCACCTCTTCGGCCTGTAAGCATGGTTTCGTTGGTTGAGCCCC
AGGGTAGATCGTTTTCGATGAAAAAAAAACGATCCCCCTGGGGTACCAGT
TTACCACCGAGTTCTCCCCGAGGGGGGTGTATTTCCCTTATTCTCTGAGT
CGATTTTGTTGCATTTTGGAGCACGAAAAGCATGATATGGGGCCGAAAAT
TCATCTGCAGATCTAAGCTTCGGGCGAGATCTAGGTGTGCCGTCTGTTTC
TTGGCCCTGACTTGCTCGTAAACCATTCTCCGTCTAGGGTTTGCCGCTCT
GTGTGTGTGTGGTGTGTGGACCATCATCATTTTTGCACAACTCCCCCGGG
GGGGGGGCTTCCCCCCCGGGGTAGCGTTGTCAAAGAACTCATTATCCCCC
CGCGGTACGTCAACTTTCCCCCGGGGGGGTTGGTTTCAGAAACAAATAAC
GATCCCCTCCCCGGGGGGGAAACTCCGTAGTTGGCGGTAGTTGAGTTGTG
TTCGAATTGATTTCGCCGGCGTGTGCGCCAAGGGGTGCAACAGAACAGGA
GGTTGCTTACCGATATACGATGTCAAACGTCTTTTCGGCACTTATGGGTT
ACGCCCAAGATCGATAGTTATCTGTATCCGACCGCGCAAAAGGTTTTACG
GTGCCTTATGTATTAGTGGTACGAATGGTTTTCCCCTGTCCTCCGTCGAG
ATTATGAGTCCATCGTTTCGATATGCCGTAATGTAGTCAGTCGTACTCCG
CACAAGGTAATAACATGCCAGCATAACACATACCTATCTTGCATCCCACC
ACCTACTACTTTCAATTGTCAAACTGTCGAACATGGTGAGGGCGATCCGC
GGGCAGCGGAACCGTCTCGAAGGAAACGACAGCGTGGGATTTTTCGACGC
GATCCAGGAAGTAGACGGGACCTTTCTCGCATTCAAGATCGACGAGGCAC
GTTTGGGTTATGGTGTTCTGGGCATATCCCGAGCAGCAGAAGAACGCCGT
CGGTTTCGGCGAGGTCGTATCTTCGACACCACCTTGAACACCAACAAGTG
AGTGCTCTGGTGTGCGTGACAGCAGCACTGTTGTACATCCCGAACGAAAA
TAAATGTTGGCAGCTCGTGCGCCACACGAGCACCGCATATCCTCTTTCAT
AGACCCCCACTCCATGTGATCGCCCCCCCCACACACACACACTACATGCA
CTTTGTGTAGCACACAAACCTTGTCATGTAGCCCAGGGGTACCTTTTCTT
ACTTTATTTTTTCCCCCTCAACCTTGTTTCAGCCCGGGGCGTTATCTTTT
GGCACGTGGTTCGGGCGCCCCGAAAAGCGTTGGCGCGCAACCTCACGGCA
TTCAATTGTGGCAGTATTCTCGTGTGTTCTAAGTGCCGTATTCGTTGGTT
GTTGGTGGTTTTGTGTTGGTGTTGCAGGCGGGTTGATCGTAGATGAGTCT
CGTTATGGTGTGGGTCAGCCCTGTATAGTGTTGTGCAGGAGGTTCATCTT
AAGAAAAAATCGACAACCCCCCAGAGACGGTTCTGGTTTGGATTGTCGGA
GGACTTTACGGCAGCCGACAATGACGTGTTGAGATTTCTGTCATTGGCTT
GATCTCCTTCATATCAATCTGTTGCCTACTTGTTTGTGCAGGCAGCCCCG
TTTGTATTCCCTCTAACCCTCCGAATGTTCTTGCAGCCTTGGTCTTGGGT
TGGTACTTATGGTGACGGCGGACTCGGAGAACAAGACTCGCATCGTGTGC
CCGGAACTTCTCCGCCACGAGCGCACTGACTGTTTCGAGTTCATCCTCGA
GCAGTACACTAAACTGCGCCATGGTTTAACCCCCCGAGGTAACCGCGCAT
AGTTCAGACGGCCCCCAGGCCCGTAGGGTGTCGTGCATGCGCATTAATAT
TTGTCACTAGAGTTCCATGTATGGGCACAGGAGCTTTACAGCACATGCTG
TGCCACGTGAGCAAGTCGTGCAGTTGCTGCGTTGACAGCGAATGCAGAGT
CAGATTGAATGCTGTGCATTCCGCAAACAGCCTGTGAACCGGCCATGCAT
TTACAACATAAGACCGCCCGTTCATGATCCTGTGCCGCGTCGTATTGGGA
GGTAATACGACGAGCAGGTGCTAAGTGTGCGCTGTCTGCCACTGCTCTCC
ACTCACATGCGCGCAACAAGCACGAACCGGCCTTGAAATGATTCCCACCC
CCTGGCGTGTACCTGTCAGGTCATTTTCAATGACGCTCAATAGGACATGA
CTAGTCTGCCTCTGTACTGCATCTGGCACACCATCCAGAACATCATCAAG
CCGTGCACGAGTGTCCCACAAGGAAGGTTTGCAGAAATGCTGGACCACTT
CAAGAAAGTAGCGTACTGCGCGGCGCCGCAGGTATGGAGTTCCGCACGGT
TCGCTTCAGTCAGATCAAGAGTAGTCTGCTGTGGTTGGAGCGGACAAGTG
CTCCTGCATTCAGTCCAGGCGAACGTCGTGTCGACGTACTTTAGGTACAT
AACGCCCTGTGCCGAACAGCTCGCTCCTATCTAAGATCCTGCTTGCATTG
GTATTGTAGAAGTAATGAACCGCAACCCGTCGATTGCCTGCGAGGCGGTT
CAGTCACAAAAGGGACTTTTCAGTCGTGATGCTCGATTCAAGAGCTTCAC
TTTGTTTCGCTTCTTCCGCCAGATGTTCGCCACCCACTGGAGCCATGTCC
TCGGCGTCGTGAGAGGGACCGGGGTGGAAAGCTACACGGCTGATTTCATC
TTCAAGTGAGTTAAATTTTAGGGAAGCTTTGTGTGTGGTACATACTCGAA
TTTGTAGCAGTAGATTGCAACGCCGAGGTTCACCTTAGGGTCAATCCTCT
GTTGAGGTTGACGGGCAGGCCGACACGACGTGATGCTCGTTTTCTGTCCG
TCCTGTTGGTCCAGGCATACCGCCTGAGTGTGTTTCTCGCGCTCTCCCGG
GGTCTCTTTTGCACGCGCTATCATTGCTTGAGGTTAAGGGAGAAGTGTTA
CCGTACTTCGTGTCATCCACAGGAAGACAAAGAAGTGGGCGTTCTGCTTT
CACCCCGTCTCGCTGACGCTCGGGATCACGTCAGCGTTGCGGGCGGAAGG
CCTCAACAAAGTCCTCAAGCTCCGCGTGAACCGATATTCGACCCTCAGGC
ATTTAGACGAAGCGCTGTGGAAGGTGGAGCACAACCTCCAGCTGGAGTCT
GAGAGGTAATTCCCCAACGGCTGTTTCCAAGAATTATTTTGTACATGTCG
CGTCCCCGAGGATAGGGCTTGTATGCATTACGGCGTGTGCTTCGTCCTGT
CACTGCTTTAACCACCTGTCTCTTTCCTTGTACTGTTACTCTCGTGTAAT
GGACAGAGTGTCACTCGGCGGCAACAATGACAAGGTCTTGCTCCAGCACC
CTTCCTGAAGCAACGGCGTTGTAGGAGTGATGCTCAAGTTCGTCGAGCTA
ATTGGCACGGCGCTCCGCAGCGTCGGAGCAAGCACCTTGGCGTTAGATGT
GAGATGCCTTCCTTATGTCGGATTCTGGTCGTGTACACTGTGGACGTACG
TGGCGCCGCTTGGCTTATTCTTGTCGTCTGTTTTCCCTAACTCGCGTCCC
CAGAATGTAAGAGGGGGGGCGTTGGTGTCAATGTCATTGTCATTCGGTGG
AAGTTGGCGATTAGTTGATTAGCTTCCGAGTTGGATCAATCGGTGTACTC
TTGTCATGAGGCGATTCGTCTTGTAGGAGTCGTTCAACGCATCAGAGATT
TGTTCTGTAGCAGGCTCTTTGAGTGCCGTATTGGCTGCATCGGAGAATCT
TCCTCCACTTGGCATGGAAGCTACTCTATTCACTCTTGGGATCAGATATC
GTTTTGATGCGAATATAATAACAACGATATACCGTAAACTACGGAGTTTT
CCCCCCGTAGTACATATCCCCCCCCTCCCATCGCCTTTTCGGCCTGGAAG
CATGGTTTCGTTGATTCTAACCGGGGTAGATCGTTTTAGGCCAAACAAAA
ACTCAGCGTTGGTTGCGGCGGTGGCTGAAACGGGCGGGGGGCAGCAGCGG
GAGTTTTTGGATGTCACAGGAGGGAGAATGTTTGCGTTGATGGTCGGCTT
TGCAGTTTACTGTTTTGGGGATAAAGACGATGGCACCTATTTGCGGGTGC
GCGCTGTTTTAGGCTTGGTCCTTAAACACTACACTGGAGGAAGTGCTAGA
TATGTTTGTTAATGCTTGGGGCAGTACGTGCTTTCCGAATTTGTAATGTT
ATTGGTCAGGAGGTTGGGTTTTTGTTTAGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig121:17169..21948-

>mRNA_E-fasciculatus_F_contig121.1637.1 ID=mRNA_E-fasciculatus_F_contig121.1637.1|Name=mRNA_E-fasciculatus_F_contig121.1637.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=906bp|location=Sequence derived from alignment at E-fasciculatus_F_contig121:17169..21948- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACTAGTCTGCCTCTGTACTGCATCTGGCACACCATCCAGAACATCAT
CAAGCCGTGCACGAGTGTCCCACAAGGAAGGTTTGCAGAAATGCTGGACC
ACTTCAAGAAAGTAGCGTACTGCGCGGCGCCGCAGATGACTAGTCTGCCT
CTGTACTGCATCTGGCACACCATCCAGAACATCATCAAGCCGTGCACGAG
TGTCCCACAAGGAAGGTTTGCAGAAATGCTGGACCACTTCAAGAAAGTAG
CGTACTGCGCGGCGCCGCAGATGTTCGCCACCCACTGGAGCCATGTCCTC
GGCGTCGTGAGAGGGACCGGGGTGGAAAGCTACACGGCTGATTTCATCTT
CAAATGTTCGCCACCCACTGGAGCCATGTCCTCGGCGTCGTGAGAGGGAC
CGGGGTGGAAAGCTACACGGCTGATTTCATCTTCAAGAAGACAAAGAAGT
GGGCGTTCTGCTTTCACCCCGTCTCGCTGACGCTCGGGATCACGTCAGCG
TTGCGGGCGGAAGGCCTCAACAAAGTCCTCAAGCTCCGCGTGAACCGATA
TTCGACCCTCAGGCATTTAGACGAAGCGCTGTGGAAGGTGGAGCACAACC
TCCAGCTGGAGTCTGAGAGGAAGACAAAGAAGTGGGCGTTCTGCTTTCAC
CCCGTCTCGCTGACGCTCGGGATCACGTCAGCGTTGCGGGCGGAAGGCCT
CAACAAAGTCCTCAAGCTCCGCGTGAACCGATATTCGACCCTCAGGCATT
TAGACGAAGCGCTGTGGAAGGTGGAGCACAACCTCCAGCTGGAGTCTGAG
AGAGTGTCACTCGGCGGCAACAATGACAAGGTCTTGCTCCAGCACCCTTC
CTGAAGTGTCACTCGGCGGCAACAATGACAAGGTCTTGCTCCAGCACCCT
TCCTGA
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