mRNA_E-fasciculatus_F_contig12099.1635.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12099.1635.1
Unique NamemRNA_E-fasciculatus_F_contig12099.1635.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12099.1635.1 vs. uniprot
Match: D7FH80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH80_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 4.000e-18
Identity = 42/67 (62.69%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:  142 PDGWGAAVTNGDTTKLVELVLVWSGSKPEHALSVLRNCVSLMEEEVAFSA-AASPLPLPATTPGGSL 339
            PD WG AV +GD TKL ELVL+WSG KPE ALSV+R+CVS++E+EVA S   +SPL    TT GGS+
Sbjct:   12 PDEWGPAVASGDATKLAELVLLWSGLKPERALSVIRDCVSVLEKEVALSTPGSSPLRATPTTLGGSV 78
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BLAST of mRNA_E-fasciculatus_F_contig12099.1635.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 3.510e-15
Identity = 42/64 (65.62%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:  142 PDGWGAAVTNGDTTKLVELVLVWSGSKPEHALSVLRNCVSLMEEEVAFSAA-ASPLPLPATTPG 330
            PD WG AV  GD TKL ELVLVWSGS+PE ALS+LR CV L+EEE AFS   +SPL  P+ T G
Sbjct:   67 PDKWGLAVATGDATKLAELVLVWSGSRPEAALSLLRECVLLLEEEAAFSVPDSSPLQSPSCTLG 130
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BLAST of mRNA_E-fasciculatus_F_contig12099.1635.1 vs. uniprot
Match: D7FUL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 3.590e-11
Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:  154 GAAVTNGDTTKLVELVLVWSGSKPEHALSVLRNCVSLMEEEVAFSAA-ASPLPLPATTPG 330
            G+AV +G  TKL ELVLVWS SKPE ALS+ R CVSL+E+E A SA+ +SPL   +T PG
Sbjct:   71 GSAVASGAATKLAELVLVWSVSKPERALSIARTCVSLLEKEDAHSASGSSPLXXXSTAPG 130
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BLAST of mRNA_E-fasciculatus_F_contig12099.1635.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 5.980e-10
Identity = 44/85 (51.76%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:   85 REVVVLVPASSPLQSLPTTPDGWGAAVTNGDTTKLVELVLVWSGSKPEHALSVLRNCVSLMEEEVAFSAAASP-LPLPATTPGGS 336
            RE  V VP     Q L      W AA      T+L +LVLVWSGS+PE ALS+L++CVSL+E+E AFSA A P +PL  T PG S
Sbjct:   36 RETSVRVP-----QGLMNGARPWRAA------TRLAQLVLVWSGSEPEPALSILKDCVSLLEKEFAFSAPAFPAVPLLPTMPGPS 109
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BLAST of mRNA_E-fasciculatus_F_contig12099.1635.1 vs. uniprot
Match: D7FTA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA8_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 2.070e-6
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 LAELVLVWSGSKPERALSILKDCVSVLEREVVVLVPASSPLQS 129
            LAELVL+W G  P  ALSIL+ CV+VLE+EV +  P SSPL S
Sbjct:   27 LAELVLLWCGVLPHPALSILRRCVAVLEKEVALSAPTSSPLPS 69
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12099.1635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FH80_ECTSI4.000e-1862.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPY7_9PHAE3.510e-1565.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUL5_ECTSI3.590e-1161.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2S9_ECTSI5.980e-1051.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTA8_ECTSI2.070e-662.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12099contigE-fasciculatus_F_contig12099:797..1523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size347
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927719.8876007-CDS-E-fasciculatus_F_contig12099:796..9411622927719.8876007-CDS-E-fasciculatus_F_contig12099:796..941Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12099 797..941 +
1695995664.5919528-CDS-E-fasciculatus_F_contig12099:796..9411695995664.5919528-CDS-E-fasciculatus_F_contig12099:796..941Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12099 797..941 +
1622927719.9036798-CDS-E-fasciculatus_F_contig12099:1323..15231622927719.9036798-CDS-E-fasciculatus_F_contig12099:1323..1523Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12099 1324..1523 +
1695995664.6033525-CDS-E-fasciculatus_F_contig12099:1323..15231695995664.6033525-CDS-E-fasciculatus_F_contig12099:1323..1523Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12099 1324..1523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12099.1635.1prot_E-fasciculatus_F_contig12099.1635.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12099 797..1523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12099.1635.1

>prot_E-fasciculatus_F_contig12099.1635.1 ID=prot_E-fasciculatus_F_contig12099.1635.1|Name=mRNA_E-fasciculatus_F_contig12099.1635.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=115bp
LAELVLVWSGSKPERALSILKDCVSVLEREVVVLVPASSPLQSLPTTPDG
WGAAVTNGDTTKLVELVLVWSGSKPEHALSVLRNCVSLMEEEVAFSAAAS
PLPLPATTPGGSLE*
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mRNA from alignment at E-fasciculatus_F_contig12099:797..1523+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12099.1635.1 ID=mRNA_E-fasciculatus_F_contig12099.1635.1|Name=mRNA_E-fasciculatus_F_contig12099.1635.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=727bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12099:797..1523+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTAGCCGAGCTGGTGCTGGTTTGGTCCGGTTCAAAGCCCGAGCGGGCTCT
GTCGATTCTAAAAGACTGCGTTTCTGTGCTGGAGAGAGAGGTTGTGGTTT
TAGTTCCGGCTTCTTCTCCCCTTCAATCGCTCCCGACTACGCCTGGTGGG
TTCCCTTTCGTCGTATAGAGTTCTTGAATTGGCCTGCACCCTGACCGCCT
TGAGTATATGCCACGGGTCTTGCATGGTGGCTGAGAACTGCTTTGTGTTC
TTTCCTAGCAGTGAGGCGTTCTGAGGGGTGCTCAGAGCGTGGCGCCGGTC
TTGTGATATGATACCATCTCGTCATGTATCCCTGTCCGTTTTGTAGATTC
CGTCCGATAGTTGAATAACACGACTGAGTCCAAATTGTGTAACGAACCAG
GACCTTTACGAGGAAACAGGTGTGTTTGAATCTCTTTCGAGGGAGATCGC
GGTAATCGGAGGTAGGCTTGGACTGATCCAAAACCACCACGTAGCTTTGA
CAACACCATATCATTTTGATTCTGCAGATGGATGGGGCGCGGCCGTGACC
AACGGCGACACTACTAAGCTAGTGGAGCTGGTGCTGGTTTGGAGTGGTTC
AAAGCCCGAGCATGCTCTGTCCGTTCTGAGGAACTGCGTTTCTTTGATGG
AGGAGGAGGTTGCGTTTTCAGCTGCGGCTTCTCCCCTTCCTTTGCCCGCG
ACTACTCCCGGTGGGTCCCTCGAGTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12099:797..1523+

>mRNA_E-fasciculatus_F_contig12099.1635.1 ID=mRNA_E-fasciculatus_F_contig12099.1635.1|Name=mRNA_E-fasciculatus_F_contig12099.1635.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=690bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12099:797..1523+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTAGCCGAGCTGGTGCTGGTTTGGTCCGGTTCAAAGCCCGAGCGGGCTCT
GTCGATTCTAAAAGACTGCGTTTCTGTGCTGGAGAGAGAGGTTGTGGTTT
TAGTTCCGGCTTCTTCTCCCCTTCAATCGCTCCCGACTACGCCTGCTAGC
CGAGCTGGTGCTGGTTTGGTCCGGTTCAAAGCCCGAGCGGGCTCTGTCGA
TTCTAAAAGACTGCGTTTCTGTGCTGGAGAGAGAGGTTGTGGTTTTAGTT
CCGGCTTCTTCTCCCCTTCAATCGCTCCCGACTACGCCTGATGGATGGGG
CGCGGCCGTGACCAACGGCGACACTACTAAGCTAGTGGAGCTGGTGCTGG
TTTGGAGTGGTTCAAAGCCCGAGCATGCTCTGTCCGTTCTGAGGAACTGC
GTTTCTTTGATGGAGGAGGAGGTTGCGTTTTCAGCTGCGGCTTCTCCCCT
TCCTTTGCCCGCGACTACTCCCGGTGGGTCCCTCGAGTAAATGGATGGGG
CGCGGCCGTGACCAACGGCGACACTACTAAGCTAGTGGAGCTGGTGCTGG
TTTGGAGTGGTTCAAAGCCCGAGCATGCTCTGTCCGTTCTGAGGAACTGC
GTTTCTTTGATGGAGGAGGAGGTTGCGTTTTCAGCTGCGGCTTCTCCCCT
TCCTTTGCCCGCGACTACTCCCGGTGGGTCCCTCGAGTAA
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