mRNA_E-fasciculatus_F_contig12097.1633.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12097.1633.1
Unique NamemRNA_E-fasciculatus_F_contig12097.1633.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12097.1633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12097contigE-fasciculatus_F_contig12097:17..587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size571
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12097.1633.1prot_E-fasciculatus_F_contig12097.1633.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12097 86..532 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927719.7419639-UTR-E-fasciculatus_F_contig12097:16..851622927719.7419639-UTR-E-fasciculatus_F_contig12097:16..85Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12097 17..85 +
1695995664.5136042-UTR-E-fasciculatus_F_contig12097:16..851695995664.5136042-UTR-E-fasciculatus_F_contig12097:16..85Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12097 17..85 +
1622927719.7784472-UTR-E-fasciculatus_F_contig12097:532..5871622927719.7784472-UTR-E-fasciculatus_F_contig12097:532..587Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12097 533..587 +
1695995664.5359492-UTR-E-fasciculatus_F_contig12097:532..5871695995664.5359492-UTR-E-fasciculatus_F_contig12097:532..587Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12097 533..587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927719.7634122-CDS-E-fasciculatus_F_contig12097:85..5321622927719.7634122-CDS-E-fasciculatus_F_contig12097:85..532Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12097 86..532 +
1695995664.5236132-CDS-E-fasciculatus_F_contig12097:85..5321695995664.5236132-CDS-E-fasciculatus_F_contig12097:85..532Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12097 86..532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12097.1633.1

>prot_E-fasciculatus_F_contig12097.1633.1 ID=prot_E-fasciculatus_F_contig12097.1633.1|Name=mRNA_E-fasciculatus_F_contig12097.1633.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=149bp
MRVNFQQEPGTTSNRSISDTHHKTSTTRAYKARNKAQNTKHNTQDKQHQY
GREPLVCLPALHLQQCVQQRATRRHFVVQWGGWGSVTQVCASCINRSYTV
NVQKALVIQSVPSNFTRATGPPVPPINQLTYRHCCTVCTIDQYNEELP*
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mRNA from alignment at E-fasciculatus_F_contig12097:17..587+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12097.1633.1 ID=mRNA_E-fasciculatus_F_contig12097.1633.1|Name=mRNA_E-fasciculatus_F_contig12097.1633.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=571bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12097:17..587+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACAAGACTAGACTTAAAAGGCACGATGCACATAACACAACTTGGCAAAC
TTCGATCTGAAACAAAAACATGAGGGTAAACTTCCAACAGGAACCAGGCA
CTACAAGTAATCGTTCCATATCCGACACACATCACAAGACATCAACAACA
AGAGCATACAAAGCGCGAAACAAAGCACAAAACACAAAACACAACACACA
AGACAAACAACACCAATACGGGCGGGAACCACTTGTGTGTTTGCCGGCCT
TACACTTACAGCAGTGCGTTCAGCAAAGGGCAACAAGGCGCCACTTCGTA
GTACAGTGGGGTGGATGGGGGTCAGTAACACAGGTTTGTGCCTCGTGCAT
CAACCGGAGCTATACAGTCAACGTACAGAAGGCCTTGGTGATTCAGTCTG
TGCCCAGCAATTTCACCCGCGCTACCGGTCCACCGGTGCCGCCAATCAAC
CAGTTGACGTACCGCCACTGCTGCACAGTATGCACAATCGATCAATACAA
CGAGGAATTGCCGTAGACAACACTCACGAGGAAGGAGCTGGATCCGTCCA
AAGACGACAGCGGCGTGAGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12097:17..587+

>mRNA_E-fasciculatus_F_contig12097.1633.1 ID=mRNA_E-fasciculatus_F_contig12097.1633.1|Name=mRNA_E-fasciculatus_F_contig12097.1633.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=894bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12097:17..587+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGGGTAAACTTCCAACAGGAACCAGGCACTACAAGTAATCGTTCCAT
ATCCGACACACATCACAAGACATCAACAACAAGAGCATACAAAGCGCGAA
ACAAAGCACAAAACACAAAACACAACACACAAGACAAACAACACCAATAC
GGGCGGGAACCACTTGTGTGTTTGCCGGCCTTACACTTACAGCAGTGCGT
TCAGCAAAGGGCAACAAGGCGCCACTTCGTAGTACAGTGGGGTGGATGGG
GGTCAGTAACACAGGTTTGTGCCTCGTGCATCAACCGGAGCTATACAGTC
AACGTACAGAAGGCCTTGGTGATTCAGTCTGTGCCCAGCAATTTCACCCG
CGCTACCGGTCCACCGGTGCCGCCAATCAACCAGTTGACGTACCGCCACT
GCTGCACAGTATGCACAATCGATCAATACAACGAGGAATTGCCGTAGATG
AGGGTAAACTTCCAACAGGAACCAGGCACTACAAGTAATCGTTCCATATC
CGACACACATCACAAGACATCAACAACAAGAGCATACAAAGCGCGAAACA
AAGCACAAAACACAAAACACAACACACAAGACAAACAACACCAATACGGG
CGGGAACCACTTGTGTGTTTGCCGGCCTTACACTTACAGCAGTGCGTTCA
GCAAAGGGCAACAAGGCGCCACTTCGTAGTACAGTGGGGTGGATGGGGGT
CAGTAACACAGGTTTGTGCCTCGTGCATCAACCGGAGCTATACAGTCAAC
GTACAGAAGGCCTTGGTGATTCAGTCTGTGCCCAGCAATTTCACCCGCGC
TACCGGTCCACCGGTGCCGCCAATCAACCAGTTGACGTACCGCCACTGCT
GCACAGTATGCACAATCGATCAATACAACGAGGAATTGCCGTAG
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