mRNA_E-fasciculatus_F_contig12080.1627.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12080.1627.1
Unique NamemRNA_E-fasciculatus_F_contig12080.1627.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12080.1627.1 vs. uniprot
Match: D8LTV6_ECTSI (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTV6_ECTSI)

HSP 1 Score: 442 bits (1137), Expect = 9.870e-155
Identity = 211/212 (99.53%), Postives = 212/212 (100.00%), Query Frame = 1
Query:   49 KKVDGEGRGKRVPLAGRPLFTSVASTKGHRPRMEDEFFLSSDGSFSAVYDGHGGANVSEYLRRNLYKHVMDHLPPGDDVYGLETVQEALRSAFKCADDYVITQTPYGNEGSCAVSVTIHCDREGKVSIISCNLGDSRAVLSRGGKALDLTEDHKPNAPREMERIYRHDGMVTWEGFECSRGLQIEGTGVYRINGNLAVARAIGDIDYRPWLS 684
            KKVDGEGRGKRVPLAGRPLFTSVASTKGHRPRMEDEFFLSSDGSFSAVYDGHGGANVSEYLRRNLYKHVMDHLPPGDDVYGLETVQEALRSAFKCADDYVITQTPYGNEGSCAVSVTIHCDREGKVSIISCNLGDSRAVLSRGGKALDLTEDHKPNAPREMERIYRHDGMVTWEGFECSRGLQIEGTGVYRING+LAVARAIGDIDYRPWLS
Sbjct:   21 KKVDGEGRGKRVPLAGRPLFTSVASTKGHRPRMEDEFFLSSDGSFSAVYDGHGGANVSEYLRRNLYKHVMDHLPPGDDVYGLETVQEALRSAFKCADDYVITQTPYGNEGSCAVSVTIHCDREGKVSIISCNLGDSRAVLSRGGKALDLTEDHKPNAPREMERIYRHDGMVTWEGFECSRGLQIEGTGVYRINGSLAVARAIGDIDYRPWLS 232          
BLAST of mRNA_E-fasciculatus_F_contig12080.1627.1 vs. uniprot
Match: A0A6H5KKR9_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKR9_9PHAE)

HSP 1 Score: 438 bits (1126), Expect = 3.130e-150
Identity = 209/212 (98.58%), Postives = 211/212 (99.53%), Query Frame = 1
Query:   49 KKVDGEGRGKRVPLAGRPLFTSVASTKGHRPRMEDEFFLSSDGSFSAVYDGHGGANVSEYLRRNLYKHVMDHLPPGDDVYGLETVQEALRSAFKCADDYVITQTPYGNEGSCAVSVTIHCDREGKVSIISCNLGDSRAVLSRGGKALDLTEDHKPNAPREMERIYRHDGMVTWEGFECSRGLQIEGTGVYRINGNLAVARAIGDIDYRPWLS 684
            KKVDGEGRGKRVPLAGRPLFTSVASTKGHRPRMEDEFFLSSDGSFSAVYDGHGGANVSEYLRRNLYKHVMDHLPPGDDVYGLETVQEALRSAFKCADDYVITQTPYGNEGSCAVSVTIHCD+EGKVSIISCNLGDSRAVLSRGGKALDLTEDHKPNAPREMERIYRH GMVTWEGFECSRGLQIEGTGVYRING+LAVARAIGDIDYRPWLS
Sbjct:  215 KKVDGEGRGKRVPLAGRPLFTSVASTKGHRPRMEDEFFLSSDGSFSAVYDGHGGANVSEYLRRNLYKHVMDHLPPGDDVYGLETVQEALRSAFKCADDYVITQTPYGNEGSCAVSVTIHCDKEGKVSIISCNLGDSRAVLSRGGKALDLTEDHKPNAPREMERIYRHRGMVTWEGFECSRGLQIEGTGVYRINGSLAVARAIGDIDYRPWLS 426          
BLAST of mRNA_E-fasciculatus_F_contig12080.1627.1 vs. uniprot
Match: A0A835Z7U5_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7U5_9STRA)

HSP 1 Score: 218 bits (555), Expect = 2.390e-66
Identity = 116/215 (53.95%), Postives = 149/215 (69.30%), Query Frame = 1
Query:   49 KKVDGEGRGKRVPLAGRPLFTSVASTKGHRPRMEDEFFLSSDGSFSAVYDGHGGANVSEYLRRNLYKHVMDHLPPGDDVYGLETVQEALRSAFKCADDYVITQTPYGNEGSCAVSVTIH---CDREGKVSIISCNLGDSRAVLSRGGKALDLTEDHKPNAPREMERIYRHDGMVTWEGFECSRGLQIEGTGVYRINGNLAVARAIGDIDYRPWLS 684
            +  D + + + VP A  PLFTSV ++KGHR  MED++FLS+DG F+AVYDGHGGA+VS+YLR+NLY  V  +LP  +   G E + +AL++AFK  DD V+    +  +GS AV+V IH       G  SII+ N+GDSRAVL R GKA+++T+DHKPNA  E++RI    G V W GF    G  IEGTGVYRINGNLAVARAIGD   RP++S
Sbjct:   40 ESTDTKEQARDVP-APAPLFTSVQASKGHRSYMEDDYFLSADGRFAAVYDGHGGASVSKYLRQNLYTQVKANLPLEEQECGEEHIIQALKAAFKTVDDEVLKVRHWSYQGSTAVAVVIHPTVAGGNGNCSIITANVGDSRAVLCRRGKAVEITKDHKPNATAELDRIEALGGNVRWFGFIDPEGRPIEGTGVYRINGNLAVARAIGDSSERPFVS 253          
BLAST of mRNA_E-fasciculatus_F_contig12080.1627.1 vs. uniprot
Match: A0A4D9DDA2_9STRA (PPM-type phosphatase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDA2_9STRA)

HSP 1 Score: 192 bits (488), Expect = 5.880e-54
Identity = 110/221 (49.77%), Postives = 136/221 (61.54%), Query Frame = 1
Query:   67 GRGKRVPLAGRPLFTSVASTKGHRPRMEDEFFLSSDGSFSAVYDGHGGANVSEYLRRNLYKHVMDHLPPGD-DVYGLETVQEALRSAFKCADDYVITQTPYGNEGSCAVSVTIHCD----REG----------KVSIISCNLGDSRAVLSRGGKALDLTEDHKPNAPREMERIYRHDGMVTWEGFECSRGLQIEGTGVYRINGNLAVARAIGDIDYRPWLS 684
            G  K    AG P  TSV + KG R  MED+FF+S DGSF+ VYDGHGGA VS+YLR+NL    +  LP  D    G E V EAL +AF+  D+ V+    +   GS AV V IH +    +EG          K ++I+ N+GDSRAVLSR G+A+DLT+DHKPN P E+ER+    G V W G     G  +EG GVYRINGNLAVARA GD   RP++S
Sbjct:  301 GSSKASGGAGGPYTTSVVAFKGQRSYMEDDFFISKDGSFAGVYDGHGGAAVSKYLRQNLNAQFLAALPDADMRRLGQEKVTEALATAFRVVDEAVVKVRHWAYMGSTAVVVVIHAEEAKAKEGVEEGGRAGALKRTLIAANVGDSRAVLSRRGQAVDLTDDHKPNKPSELERVKALGGTVRWYGLLEQDGSPMEGMGVYRINGNLAVARAFGDRSERPFVS 521          
BLAST of mRNA_E-fasciculatus_F_contig12080.1627.1 vs. uniprot
Match: A0A024TM43_9STRA (PPM-type phosphatase domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TM43_9STRA)

HSP 1 Score: 183 bits (464), Expect = 3.080e-52
Identity = 91/203 (44.83%), Postives = 125/203 (61.58%), Query Frame = 1
Query:   76 KRVPLAGRPLFTSVASTKGHRPRMEDEFFLSSDGSFSAVYDGHGGANVSEYLRRNLYKHVMDHLPPGDDVYGLETVQEALRSAFKCADDYVITQTPYGNEGSCAVSVTIHCDREGKVSIISCNLGDSRAVLSRGGKALDLTEDHKPNAPREMERIYRHDGMVTWEGFECSRGLQIEGTGVYRINGNLAVARAIGDIDYRPWLS 684
            KR   A  PL  S ++ +G RP MED  F++ +  F+AV+DGHGGA+VS YL+ NLY H++ +L P  D + L+ ++ +LR AF+  D  ++ +  +  +GS A +V +  D      I S N+GDSRAVL R G+A++LT DHKPN P E  R+ +  G V W G     G  I   G YRIN NLAVARA GD D RP++S
Sbjct:   85 KRTSKADSPLLVSASAVRGDRPTMEDALFIAPNRRFTAVFDGHGGADVSSYLKANLYDHILANLGPAKDTWNLDEIETSLRDAFRTVDAVILERREWIAQGSTATAVLLMDDL-----IWSMNVGDSRAVLCRNGRAVNLTRDHKPNDPMERSRVEKAGGRVQWHGLRDPHGRPIVDMGAYRINSNLAVARAFGDGDQRPYVS 282          
BLAST of mRNA_E-fasciculatus_F_contig12080.1627.1 vs. uniprot
Match: A0A3L6V8K9_9STRA (PPM-type phosphatase domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V8K9_9STRA)

HSP 1 Score: 178 bits (452), Expect = 4.150e-52
Identity = 91/200 (45.50%), Postives = 122/200 (61.00%), Query Frame = 1
Query:   76 KRVPLAGRPLFTSVASTKGHRPRMEDEFFLSSDGSFSAVYDGHGGANVSEYLRRNLYKHVMDHLPPGDDVYGLETVQEALRSAFKCADDYVITQTPYGNEGSCAVSVTIHCDREGKVSIISCNLGDSRAVLSRGGKALDLTEDHKPNAPREMERIYRHDGMVTWEGFECSRGLQIEGTGVYRINGNLAVARAIGDIDYRP 675
            KR   +  PL  S ++ +G RP MED  F++ +  F+AV+DGHGGANVS YL+  LY H++ +L P  D + L+ ++ +LR AF+  D  ++ +  +  +GS A +V +  D      I S N+GDSRAVL R G+AL+LT DHKPN P E  R+    G V W G    RG  I   G YRIN NLAVARA+GD D RP
Sbjct:   77 KRTSKSDSPLLVSSSAVRGDRPTMEDALFIAPNQRFTAVFDGHGGANVSSYLKETLYDHIVANLGPHKDTWSLDEIESSLRDAFRAVDAAILKRREWITQGSTATAVLLVDDL-----IWSMNVGDSRAVLCRHGRALNLTRDHKPNDPMERLRVEGAGGRVHWHGLRDPRGRPIADMGAYRINSNLAVARALGDGDQRP 271          
BLAST of mRNA_E-fasciculatus_F_contig12080.1627.1 vs. uniprot
Match: A0A418FA55_9STRA (PPM-type phosphatase domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FA55_9STRA)

HSP 1 Score: 178 bits (452), Expect = 4.150e-52
Identity = 91/200 (45.50%), Postives = 122/200 (61.00%), Query Frame = 1
Query:   76 KRVPLAGRPLFTSVASTKGHRPRMEDEFFLSSDGSFSAVYDGHGGANVSEYLRRNLYKHVMDHLPPGDDVYGLETVQEALRSAFKCADDYVITQTPYGNEGSCAVSVTIHCDREGKVSIISCNLGDSRAVLSRGGKALDLTEDHKPNAPREMERIYRHDGMVTWEGFECSRGLQIEGTGVYRINGNLAVARAIGDIDYRP 675
            KR   +  PL  S ++ +G RP MED  F++ +  F+AV+DGHGGANVS YL+  LY H++ +L P  D + L+ ++ +LR AF+  D  ++ +  +  +GS A +V +  D      I S N+GDSRAVL R G+AL+LT DHKPN P E  R+    G V W G    RG  I   G YRIN NLAVARA+GD D RP
Sbjct:   77 KRTSKSDSPLLVSSSAVRGDRPTMEDALFIAPNQRFTAVFDGHGGANVSSYLKETLYDHIVANLGPHKDTWSLDEIESSLRDAFRAVDAAILKRREWITQGSTATAVLLVDDL-----IWSMNVGDSRAVLCRHGRALNLTRDHKPNDPMERLRVEGGGGRVHWHGLRDPRGRPIADMGAYRINSNLAVARALGDGDQRP 271          
BLAST of mRNA_E-fasciculatus_F_contig12080.1627.1 vs. uniprot
Match: W4FHR9_9STRA (PPM-type phosphatase domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FHR9_9STRA)

HSP 1 Score: 181 bits (458), Expect = 8.300e-52
Identity = 92/203 (45.32%), Postives = 125/203 (61.58%), Query Frame = 1
Query:   76 KRVPLAGRPLFTSVASTKGHRPRMEDEFFLSSDGSFSAVYDGHGGANVSEYLRRNLYKHVMDHLPPGDDVYGLETVQEALRSAFKCADDYVITQTPYGNEGSCAVSVTIHCDREGKVSIISCNLGDSRAVLSRGGKALDLTEDHKPNAPREMERIYRHDGMVTWEGFECSRGLQIEGTGVYRINGNLAVARAIGDIDYRPWLS 684
            KR   +  PL  S ++ +G RP MED  F++ +  F+AV+DGHGGANVS YL+  LY H++ +L P  D + L+ ++ +LR AF+  D  ++ +  +  +GS A +V +  D      I S N+GDSRAVL R G+AL+LT DHKPN P E  R+    G V W G    RG  I   G YRIN NLAVARA+GD D RP++S
Sbjct:   84 KRTSKSDSPLLVSSSAVRGDRPTMEDALFIAPNQRFTAVFDGHGGANVSSYLKETLYDHIVANLGPHKDTWSLDEIESSLRDAFRAVDAAILKRREWITQGSTATAVLLVDDL-----IWSMNVGDSRAVLCRHGRALNLTRDHKPNDPMERLRVEGAGGRVHWHGLRDPRGHPIADMGAYRINSNLAVARALGDGDQRPYVS 281          
BLAST of mRNA_E-fasciculatus_F_contig12080.1627.1 vs. uniprot
Match: A0A397AF64_9STRA (PPM-type phosphatase domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AF64_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.770e-51
Identity = 91/200 (45.50%), Postives = 122/200 (61.00%), Query Frame = 1
Query:   76 KRVPLAGRPLFTSVASTKGHRPRMEDEFFLSSDGSFSAVYDGHGGANVSEYLRRNLYKHVMDHLPPGDDVYGLETVQEALRSAFKCADDYVITQTPYGNEGSCAVSVTIHCDREGKVSIISCNLGDSRAVLSRGGKALDLTEDHKPNAPREMERIYRHDGMVTWEGFECSRGLQIEGTGVYRINGNLAVARAIGDIDYRP 675
            KR   +  PL  S ++ +G RP MED  F++ +  F+AV+DGHGGANVS YL+  LY H++ +L P  D + L+ ++ +LR AF+  D  ++ +  +  +GS A +V +  D      I S N+GDSRAVL R G+AL+LT DHKPN P E  R+    G V W G    RG  I   G YRIN NLAVARA+GD D RP
Sbjct:  104 KRTSKSDSPLLVSSSAVRGDRPTMEDALFIAPNQRFTAVFDGHGGANVSSYLKETLYDHIVANLGPHKDTWSLDEIESSLRDAFRAVDAAILKRREWITQGSTATAVLLVDDL-----IWSMNVGDSRAVLCRHGRALNLTRDHKPNDPMERLRVEGAGGGVHWHGLRDPRGRPIADMGAYRINSNLAVARALGDGDQRP 298          
BLAST of mRNA_E-fasciculatus_F_contig12080.1627.1 vs. uniprot
Match: A0A485L3M8_9STRA (Aste57867_15235 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L3M8_9STRA)

HSP 1 Score: 177 bits (449), Expect = 3.350e-50
Identity = 92/202 (45.54%), Postives = 122/202 (60.40%), Query Frame = 1
Query:   76 KRVPLAGRPLFTSVASTKGHRPRMEDEFFLSSDGSFSAVYDGHGGANVSEYLRRNLYKHVMDHLPPGDDVYGLETVQEALRSAFKCADDYVITQTPYGNEGSCAVSVTIHCDREGKVSIISCNLGDSRAVLSRGGKALDLTEDHKPNAPREMERIYRHDGMVTWEGFECSRGLQIEGTGVYRINGNLAVARAIGDIDYRPWL 681
            KR   A + L  S ++ +G R  MED  F+S    F+AV+DGHGGA+VS YL+ +LY  V+ HL P  D + L+ +   LR+AFK AD  ++ +  +  +GS A +V +  D      I S N+GDSRAVL R G+AL+LT DHKPN P E +RI    G V W G   + G  +   G YRIN NLAVARA GD D RP++
Sbjct:   81 KRTTKADQQLLVSTSAVRGDRATMEDTLFVSPSHRFAAVFDGHGGAHVSRYLQAHLYDLVVSHLGPDQDTWSLDEIDARLRAAFKAADTAILARKEWREQGSTATAVFLIDDL-----IWSMNVGDSRAVLCRDGRALNLTRDHKPNDPEERQRIEDAGGKVRWHGLRDAAGKPVVDMGAYRINSNLAVARAFGDGDQRPYV 277          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12080.1627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTV6_ECTSI9.870e-15599.53PPM-type phosphatase domain-containing protein n=1... [more]
A0A6H5KKR9_9PHAE3.130e-15098.58PPM-type phosphatase domain-containing protein n=1... [more]
A0A835Z7U5_9STRA2.390e-6653.95Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A4D9DDA2_9STRA5.880e-5449.77PPM-type phosphatase domain-containing protein n=2... [more]
A0A024TM43_9STRA3.080e-5244.83PPM-type phosphatase domain-containing protein n=2... [more]
A0A3L6V8K9_9STRA4.150e-5245.50PPM-type phosphatase domain-containing protein n=2... [more]
A0A418FA55_9STRA4.150e-5245.50PPM-type phosphatase domain-containing protein n=5... [more]
W4FHR9_9STRA8.300e-5245.32PPM-type phosphatase domain-containing protein n=1... [more]
A0A397AF64_9STRA1.770e-5145.50PPM-type phosphatase domain-containing protein (Fr... [more]
A0A485L3M8_9STRA3.350e-5045.54Aste57867_15235 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12080contigE-fasciculatus_F_contig12080:4..3323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score441.8
Seed ortholog evalue1.9e-121
Seed eggNOG ortholog2880.D8LTV6
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein phosphatase 2C (PP2C)-like domain
Ec32 orthologEc-28_002580.1
Exons5
Model size686
Cds size684
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12080.1627.1prot_E-fasciculatus_F_contig12080.1627.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12080 4..3323 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927717.2937856-CDS-E-fasciculatus_F_contig12080:3..1321622927717.2937856-CDS-E-fasciculatus_F_contig12080:3..132Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12080 4..132 +
1695995664.1264648-CDS-E-fasciculatus_F_contig12080:3..1321695995664.1264648-CDS-E-fasciculatus_F_contig12080:3..132Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12080 4..132 +
1622927717.3062289-CDS-E-fasciculatus_F_contig12080:1137..12601622927717.3062289-CDS-E-fasciculatus_F_contig12080:1137..1260Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12080 1138..1260 +
1695995664.1374738-CDS-E-fasciculatus_F_contig12080:1137..12601695995664.1374738-CDS-E-fasciculatus_F_contig12080:1137..1260Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12080 1138..1260 +
1622927717.3193824-CDS-E-fasciculatus_F_contig12080:1662..18681622927717.3193824-CDS-E-fasciculatus_F_contig12080:1662..1868Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12080 1663..1868 +
1695995664.1469548-CDS-E-fasciculatus_F_contig12080:1662..18681695995664.1469548-CDS-E-fasciculatus_F_contig12080:1662..1868Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12080 1663..1868 +
1622927717.3290784-CDS-E-fasciculatus_F_contig12080:2171..22581622927717.3290784-CDS-E-fasciculatus_F_contig12080:2171..2258Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12080 2172..2258 +
1695995664.1562486-CDS-E-fasciculatus_F_contig12080:2171..22581695995664.1562486-CDS-E-fasciculatus_F_contig12080:2171..2258Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12080 2172..2258 +
1622927717.3385053-CDS-E-fasciculatus_F_contig12080:3184..33231622927717.3385053-CDS-E-fasciculatus_F_contig12080:3184..3323Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12080 3185..3323 +
1695995664.1654828-CDS-E-fasciculatus_F_contig12080:3184..33231695995664.1654828-CDS-E-fasciculatus_F_contig12080:3184..3323Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12080 3185..3323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12080.1627.1

>prot_E-fasciculatus_F_contig12080.1627.1 ID=prot_E-fasciculatus_F_contig12080.1627.1|Name=mRNA_E-fasciculatus_F_contig12080.1627.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=228bp
GGAQRRWGGGGRGGGKKKVDGEGRGKRVPLAGRPLFTSVASTKGHRPRME
DEFFLSSDGSFSAVYDGHGGANVSEYLRRNLYKHVMDHLPPGDDVYGLET
VQEALRSAFKCADDYVITQTPYGNEGSCAVSVTIHCDREGKVSIISCNLG
DSRAVLSRGGKALDLTEDHKPNAPREMERIYRHDGMVTWEGFECSRGLQI
EGTGVYRINGNLAVARAIGDIDYRPWLS
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mRNA from alignment at E-fasciculatus_F_contig12080:4..3323+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12080.1627.1 ID=mRNA_E-fasciculatus_F_contig12080.1627.1|Name=mRNA_E-fasciculatus_F_contig12080.1627.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3320bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12080:4..3323+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCGGCGCCCAGCGGCGGTGGGGGGGAGGAGGCCGGGGGGGGGGCAAGAA GAAGGTGGACGGCGAAGGGCGCGGGAAGCGCGTCCCGTTGGCCGGACGGC CGCTGTTCACGAGCGTGGCGTCGACCAAGGTAGATACTTTCAACACGGAC TGCTGGTGTTTTCTTTCTCTCATTCCGGCGCTGGTGTTGTGCTGCCGCTG CTACAGCCCGCCGTTGTTTGTTGTCGTCATCGTCGTCGCGTTATGGTCCT CATTGGTTTTATTTGGTTTTCGCTGTTTTGATGTGTTTGTTTCAGGGTGT GGTCTTAGTACTGTTGGTAAATTCGCATGCAACCACGGGAAGACTACCCG TTCGAGATATAACCACGGCAGTATTTTGTGTGTCGTTGCGGACCACCACT GCTAACACCACCGCTGCAAGAAAATCGGCGCTCTTTTTGCCGACCGTTCG GGGTCCGGGTATCGTACGAAATTGTTCTTGTTTTTTGCGAACATGGTTCT TGTTCCTCTTGCGAACCAAATCCTGGGCCACTTGACGTTTGCTGCTTGCC GAGAGCTGCCCGGCACCTCGCGACCACGCGTTCAAAGTGCAGCAGCGCTC TCCGTTGTGCGCTAATTTACTACCCCCCTTACAATAGGATGTGTCAAACT AGTCCATCTCATTGGTGGTAAATCTGCCGGGGATCGCTGTGGAGTGGGCT CCTGAGAGTACCATTCGTATCATGAAGGGATGATGCAAGACGAAAATGGA AACAGGCAACCAAGAACCAGCCTACCGCAGTTGGTTGCCAGCTGCGACGT GTGGCGTCTCCCAAGCTCACACAGCTAGCGTTTGTTTTACTCGAAGATCC CAGCGAACCTCAATGAAAAATTTTAAAGATTTTCTCCCTATTGTGGTTTG CCATTGCATATTTTGAGCCGGTCATCGAGGCGTCCTCCTCTTGGTCATGT GCTCCTGGATCAGCGCATGTCTTGTCTACACATCCGTCTCCCCCAAAACC ACTAGTTCCAAGAACACATGGGAGCAAGGATAAATACATGACACACATAT TTTTACGGCGGAAGCATTCATATTTGTACCACGCTTCTGCGTATTCTTAT TTGCTTATTTTTATCTTGATGGTGGTCTACTCAGGGGCACCGGCCACGCA TGGAGGACGAGTTTTTCTTGTCCTCGGACGGGAGCTTTTCGGCCGTTTAC GATGGGCACGGTGGCGCCAACGTGTCAGAGTACTTGAGGCGAAACCTCTA CAAGCATGTGAGTTTTGGGGCTCCATTTTGGTGGCGTGTAGGTGTCGATG GTTGCTGCTGAGCTCCTTCGGGCAAAACCTTTGCAAGCACCTGAGTTTGG GACTCTCTGTTTGGCGGTGATGGTTGCTGTAATCGTGCTGCTGCTGCTGC TGCTGCTGCTGCTAGTCTTGTGGTGTGCGTTAACCGTTCTGGATGCCGTG GAGACCCGTCACTCTTCCAATTTCCTCTGCTATCCCAACCTGCCCAACAG CACCTCGGTGATCATATTCAGACGAGTCTGAAAAAGACGATACACAGGAA CTGTTGTGGTCCAGAACAAATATACTATTGAGTGGTCCCTCCGCAACGTG CTCTACAATTCGTACGCTGACCGAACTAAACACACCACACGCCCATGTTG TGCGCGTAGGTGATGGACCACCTGCCCCCGGGGGACGACGTGTACGGCCT CGAGACCGTCCAGGAGGCGTTGCGATCGGCCTTCAAGTGCGCCGACGACT ACGTGATCACGCAGACACCCTACGGCAACGAGGGGAGCTGCGCCGTGTCG GTCACGATCCACTGCGACAGGGAGGGCAAAGTCTCCATCATCTCCTGCAA CCTGGGAGACTCACGGTAAGTGGGGGTGACGCATTGGTGTAAGTATTGGG GGGGCTTCTCGGTTATGATCCACCGTGCCAGGGAGGGGAAGGTCTCCATT ATGTCCTGCAGCCTGGAAGACTCAAGGTCGGGGGGTAGATGGGGGGCAAG GTGTGTTGGTGGGTGGAACGGCTGGTGTGTAAGCAAGTGTGGGGCTTGCA GCTGTTGTCGTCGACGTACCCGTTTTCGTTCTCACCTTGATCGTTGCGTG TTGATGATCGTGTTTTCCCCACGACGTTTACTCCGGCTGTTTGTTTTCCC ATGGCATCGTAACGCCAGGGCGGTGCTGAGCAGGGGAGGGAAAGCTCTGG ATCTCACGGAGGACCACAAGCCCAACGCCCCGAGGGAGATGGAGCGGATT TACAGGTGCAGGAAGAATGGGGGGGAGGGGGAGCTCATGTTTTGCGTGCC TTAGCGGTTAGACCGTTGGCCACGCTTCCTCGAGAGAACAAGAGCAATTT TGAACGATCACCGATGGCCAATCGTCCCTTCCTACTTTGCCAAAGGTGGC TCAGAACTGCGTTCCCTCACCTGTCTATCCTATCGGGGGGGGGGTGTCTC GATGAGCGACGCGACGAAACTGAAGCACCTTCCGTTGTGTCATGCTTTCT GAAAGTATTGTAGTAGCATCGGGTGTCGAATTTCTCATCTACCATCTGCT GCGGTCGTGGAGATGAACTCAGGTGGACGTCTAAGCCGCGTCTACTGGTT ACTCGTGATTCATGTGTCGTAAACGACAGTCGGCCGAAGAAGGGCTAGGC TGGAAGGCGTGTGGGTATCCATTTTTTTGGCCGGCGTGCCCCCGCTTGCG TAGCGCAATTCTTCACCGACGGCGAAGGCAAACAAGCGGGTGACAAGTGT CGTCGGCCTGGCATTTTGTAGAGGGGGGGAATACCTGACACACCTGGGTG GCGAAGGGGACACCTACCTACCGTACAACCCACGGAGCCCTCATTGCCGA CCTCACCTTAGTCTAAACATTTCCGCGGTAATTGGTCGTTCTGACTGCCC GCCCCCTGATAGAGATGGCGTCTCCGCCGTTACTGATGGGAGCGTATCTA CGACGAGGCCCAACAAGTCTTATTAGCATTCCAAACCGCGACTCGAAAGT GTTTGACATTGTTCCGTTTTCCAATTGCGCTCGTCCGCTTTTTGTTTCTC ATTGTATTTGCTGGGTTTCTATAACCAGTGCAGGCGACGCAGGGTTTTGG TTGCCGGTCGATGTACAGCATTTTGACTTCATCCTCTCCCTCCCCGTCGC TCTCCTACTGCTGTTTTGTTTTGGCTTTCAGACATGATGGGATGGTAACT TGGGAAGGGTTCGAATGCTCTCGAGGCCTGCAGATTGAGGGGACCGGTGT TTACCGCATCAACGGCAACCTTGCCGTCGCAAGAGCCATCGGGGACATCG ACTACCGCCCCTGGCTGTCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12080:4..3323+

>mRNA_E-fasciculatus_F_contig12080.1627.1 ID=mRNA_E-fasciculatus_F_contig12080.1627.1|Name=mRNA_E-fasciculatus_F_contig12080.1627.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1368bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12080:4..3323+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCGGCGCCCAGCGGCGGTGGGGGGGAGGAGGCCGGGGGGGGGGCAAGAA
GAAGGTGGACGGCGAAGGGCGCGGGAAGCGCGTCCCGTTGGCCGGACGGC
CGCTGTTCACGAGCGTGGCGTCGACCAAGGGCGGCGCCCAGCGGCGGTGG
GGGGGAGGAGGCCGGGGGGGGGGCAAGAAGAAGGTGGACGGCGAAGGGCG
CGGGAAGCGCGTCCCGTTGGCCGGACGGCCGCTGTTCACGAGCGTGGCGT
CGACCAAGGGGCACCGGCCACGCATGGAGGACGAGTTTTTCTTGTCCTCG
GACGGGAGCTTTTCGGCCGTTTACGATGGGCACGGTGGCGCCAACGTGTC
AGAGTACTTGAGGCGAAACCTCTACAAGCATGGGCACCGGCCACGCATGG
AGGACGAGTTTTTCTTGTCCTCGGACGGGAGCTTTTCGGCCGTTTACGAT
GGGCACGGTGGCGCCAACGTGTCAGAGTACTTGAGGCGAAACCTCTACAA
GCATGTGATGGACCACCTGCCCCCGGGGGACGACGTGTACGGCCTCGAGA
CCGTCCAGGAGGCGTTGCGATCGGCCTTCAAGTGCGCCGACGACTACGTG
ATCACGCAGACACCCTACGGCAACGAGGGGAGCTGCGCCGTGTCGGTCAC
GATCCACTGCGACAGGGAGGGCAAAGTCTCCATCATCTCCTGCAACCTGG
GAGACTCACGGTGATGGACCACCTGCCCCCGGGGGACGACGTGTACGGCC
TCGAGACCGTCCAGGAGGCGTTGCGATCGGCCTTCAAGTGCGCCGACGAC
TACGTGATCACGCAGACACCCTACGGCAACGAGGGGAGCTGCGCCGTGTC
GGTCACGATCCACTGCGACAGGGAGGGCAAAGTCTCCATCATCTCCTGCA
ACCTGGGAGACTCACGGGCGGTGCTGAGCAGGGGAGGGAAAGCTCTGGAT
CTCACGGAGGACCACAAGCCCAACGCCCCGAGGGAGATGGAGCGGATTTA
CAGGGCGGTGCTGAGCAGGGGAGGGAAAGCTCTGGATCTCACGGAGGACC
ACAAGCCCAACGCCCCGAGGGAGATGGAGCGGATTTACAGACATGATGGG
ATGGTAACTTGGGAAGGGTTCGAATGCTCTCGAGGCCTGCAGATTGAGGG
GACCGGTGTTTACCGCATCAACGGCAACCTTGCCGTCGCAAGAGCCATCG
GGGACATCGACTACCGCCCCTGGCTGTCCACATGATGGGATGGTAACTTG
GGAAGGGTTCGAATGCTCTCGAGGCCTGCAGATTGAGGGGACCGGTGTTT
ACCGCATCAACGGCAACCTTGCCGTCGCAAGAGCCATCGGGGACATCGAC
TACCGCCCCTGGCTGTCC
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