mRNA_E-fasciculatus_F_contig1208.1622.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1208.1622.1
Unique NamemRNA_E-fasciculatus_F_contig1208.1622.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1208.1622.1 vs. uniprot
Match: D7G781_ECTSI (PAP_fibrillin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G781_ECTSI)

HSP 1 Score: 438 bits (1126), Expect = 3.140e-153
Identity = 225/247 (91.09%), Postives = 230/247 (93.12%), Query Frame = 1 
Query:    1 MWNAVWVFLLIAYPPVLSFSFAGVALQSNKAAVRRAVRRVSVGTAASSAEAGPPPAIGGDGPADDGSAAAELVTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLGEDKDWLNDSRVFGNYNVAYVSSGPSQRGNPAGGRWRGRLGRSLFRQALPPPHAIPTEEMFQHLVEPSTAVNMVAFRAFGLLKGCVTLRGDFKAIPDKPNFVKASFGPPLINFLGKHGLTIRSGPKSSVRLAATYVDERV 741
            MWNAVWV LLI YPPVLSFSFAGVALQSNKAA+RRA RRVSV TAASSAEAGPPPAIGGDGPA+DGSAAAELVTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLG DKDWLNDSRVFGNYNVAYVSSGPSQRGNPAGGRWRGR+GRSLFR          TEEMFQHLVEP+TAVNMV FRAFGLLKGCVTLRGDFKAIPDKPNFVKASFGPPLINFLGK GLTIRSGPKSSVRLAATYVDER+
Sbjct:    1 MWNAVWVLLLITYPPVLSFSFAGVALQSNKAAIRRAARRVSVETAASSAEAGPPPAIGGDGPANDGSAAAELVTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLGADKDWLNDSRVFGNYNVAYVSSGPSQRGNPAGGRWRGRVGRSLFR----------TEEMFQHLVEPTTAVNMVVFRAFGLLKGCVTLRGDFKAIPDKPNFVKASFGPPLINFLGKRGLTIRSGPKSSVRLAATYVDERI 237
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BLAST of mRNA_E-fasciculatus_F_contig1208.1622.1 vs. uniprot
Match: A0A6H5JIG4_9PHAE (PAP_fibrillin domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG4_9PHAE)

HSP 1 Score: 430 bits (1105), Expect = 3.510e-151
Identity = 222/246 (90.24%), Postives = 226/246 (91.87%), Query Frame = 1 
Query:    1 MWNAVWVFLLIAYPPVLSFSFAGVALQSNKAAVRRAVRRVSVGTAASSAEAGPPPAIGGDGPADDGSAAAELVTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLGEDKDWLNDSRVFGNYNVAYVSSGPSQRGNPAGGRWRGRLGRSLFRQALPPPHAIPTEEMFQHLVEPSTAVNMVAFRAFGLLKGCVTLRGDFKAIPDKPNFVKASFGPPLINFLGKHGLTIRSGPKSSVRLAATYVDER 738
            MWNAVW+ LL  YPPVLSFSFAGVALQSNKA VRRA  RV V TAASSAEAGPPP IGGD PA+DGSAAAELVTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLG DKDWLNDSRVFGNYNVAYVSSGPSQRGNPAGGRWRGR+GRSLFRQA        TEEMFQHLVEP+TAVNMV FRAFGLLKGCVTLRGDFKAIPDKPNFVKASFGPPLINFLGKHGLTIRSGPKSSVRLAATYVDER
Sbjct:    1 MWNAVWILLLTTYPPVLSFSFAGVALQSNKAGVRRAAPRVLVETAASSAEAGPPPPIGGDLPANDGSAAAELVTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLGADKDWLNDSRVFGNYNVAYVSSGPSQRGNPAGGRWRGRVGRSLFRQA--------TEEMFQHLVEPATAVNMVVFRAFGLLKGCVTLRGDFKAIPDKPNFVKASFGPPLINFLGKHGLTIRSGPKSSVRLAATYVDER 238
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BLAST of mRNA_E-fasciculatus_F_contig1208.1622.1 vs. uniprot
Match: A0A7S2Y058_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y058_9STRA)

HSP 1 Score: 151 bits (381), Expect = 5.320e-40
Identity = 78/181 (43.09%), Postives = 112/181 (61.88%), Query Frame = 1 
Query:  211 ELVTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLGEDKDWLNDSRVFGNYNVAYVSSG--PSQRGNPAGGRWRGRLGRSLFRQALPPPHAIPTEEMFQHLVEPSTAVNMVAFRAFGLLKGCVTLRGDFKAI--PDKPNFVKASFGPPLINFLGKHGLTIRSGPKSSVRLAATYVDERV 741
            + +  +L  +  T+RGV  + EQ+ +IDG+++++  L  + D L+D R+FGNYNVAYVS+G  PSQ+GNPAGG +RG++GR  F+          T  +FQHLV P+  +NMV F+  G   GC TL G F+ I  PD PN V+A F PP +        T++ GP+S V L   YVD++V
Sbjct:  114 QAIEEILKIVPETDRGVLASEEQRTKIDGLLEKVENLNTNADTLSDERIFGNYNVAYVSTGKAPSQKGNPAGGGFRGKIGRKFFQ----------TTAVFQHLVAPNQVINMVQFKMLGRFPGCTTLMGTFEKINVPDLPNAVRAKFQPPRVTIGSSGKFTLQIGPQSQVTLGTPYVDDKV 284
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BLAST of mRNA_E-fasciculatus_F_contig1208.1622.1 vs. uniprot
Match: A0A7S3UXI2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXI2_HETAK)

HSP 1 Score: 146 bits (369), Expect = 1.330e-39
Identity = 81/175 (46.29%), Postives = 104/175 (59.43%), Query Frame = 1 
Query:  217 VTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLGEDKDWLNDSRVFGNYNVAYVSSGPSQRGNPAGGRWRGRLGRSLFRQALPPPHAIPTEEMFQHLVEPSTAVNMVAFRAFGLLKGCVTLRGDFKAIPDKPNFVKASFGPPLINFLGKHGLTIRSGPKSSVRLAATYVDERV 741
            V  LL  I GT+ G    P ++ EID +I+ L+  G  +  L    ++GNYNVAYVSSG SQRGNPAGGR+RG LG++LFR          T  +FQHLVEP+  VNMV F+  G+++GC TL G F      PN V+A F PP + F      T+  GP S V L+  Y+D RV
Sbjct:   71 VDQLLELIRGTDAGSAVAPGKRAEIDALIEALSAAGGGQRNLARPEIYGNYNVAYVSSGGSQRGNPAGGRFRGALGKALFR----------TTNLFQHLVEPNRVVNMVQFKLLGVVEGCTTLAGTFAPEGRDPNTVRARFQPPRVTFGRSGRCTLELGPPSEVVLSTPYLDGRV 235
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BLAST of mRNA_E-fasciculatus_F_contig1208.1622.1 vs. uniprot
Match: A0A383V4T8_TETOB (PAP_fibrillin domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383V4T8_TETOB)

HSP 1 Score: 140 bits (353), Expect = 4.720e-36
Identity = 82/194 (42.27%), Postives = 117/194 (60.31%), Query Frame = 1 
Query:  196 GSAAAELVTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLGEDKDW--LNDSRVFGNYNVAYVSSGPSQRGNPAGGRWRGRLGRSLFRQALPPPHAIPTEEMFQHLVEPSTAVNMVAFRAFGLLKGCVTLRGDF----------KAIPDKPNFVKASFGPPLINFLGKHGLTIRSGPKSSVRLAATYVDERV 741
            G AAA++V+++L K++GT+ G+   PEQ++E+D +I QL   G  +    + +  +FGNYNVAY SSG  QRG PAGGR+RGRLGR LF+          T  +FQ +++P  A N V F+ FG+L G V LRG            +    + + V+  F PP+++ LG  GL  R GP SSV+L+  Y+DERV
Sbjct:   47 GPAAADIVSTILDKVQGTDGGISLQPEQKREVDALISQLEAAGRSQQPRPMQNPLLFGNYNVAYTSSGDDQRGQPAGGRFRGRLGRLLFQ----------TTGVFQSVLQPDIATNKVTFKLFGVLPGAVGLRGTVVPVQAGQPHGRGTAGEGDTVRVLFEPPVLS-LGS-GLHFRIGPPSSVQLSTPYLDERV 228
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BLAST of mRNA_E-fasciculatus_F_contig1208.1622.1 vs. uniprot
Match: A0A250WT81_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WT81_9CHLO)

HSP 1 Score: 130 bits (328), Expect = 6.070e-33
Identity = 76/180 (42.22%), Postives = 108/180 (60.00%), Query Frame = 1 
Query:  214 LVTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLGEDKDWLNDSRVFGNYNVAYVSS--GPSQRGNPAGGRWRGRLGRSLFRQALPPPHAIPTEEMFQHLV--EPSTAVNMVAFRAFGLLKGCVTLRGDFKAIPDKPNFVKASFGPPLINFLGKHGLTIRSGPKSSVRLAATYVDERV 741
            LV  ++ ++EGT+ G++ +  Q+ EID ++D+L   G+    + D R+ GNY V Y S+   P Q+G  AGGR+RG LGRSLF+          T  +FQ ++  +P  AVN VAF   GL+ G V LRG  +   D    V   F PP+++F GK  L +R GPKSSV+LA TY+DER+
Sbjct:   47 LVDDIICRVEGTDGGINLSDAQKDEIDLLLDKLREAGKGSRPVKDPRLIGNYVVVYTSTRRAPGQKGQAAGGRFRGALGRSLFK----------TTGVFQSVLAGDPPIAVNKVAFNLLGLIPGYVGLRGRVEPFGDDDESVSVYFDPPILSFAGK--LHLRIGPKSSVQLATTYLDERI 214
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BLAST of mRNA_E-fasciculatus_F_contig1208.1622.1 vs. uniprot
Match: D8TNC6_VOLCA (PAP_fibrillin domain-containing protein (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TNC6_VOLCA)

HSP 1 Score: 127 bits (319), Expect = 5.840e-32
Identity = 83/206 (40.29%), Postives = 117/206 (56.80%), Query Frame = 1 
Query:  133 AASSAEAGPPPAIGGDGPADDGSAAAELVTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLG--EDKDWLNDSRVFGNYNVAYVSSGPSQR-GNPAGGRWRGRLGRSLFRQALPPPHAIPTEEMFQHLVEPSTAVNMVAFRAFGLLKGCVTLRGDFKAIPDKPNFVKASFGPPLINFLGKHGLTIRSGPKSSVRLAATYVDERV 741
            AASSA   P PA     P+     A +LV  +L  IEGT+ G+  +P+ +  +D ++++L  LG  +    L++  ++GNYNVAY S G SQ  G PAGGR+RGR+GR+LFR          T  +FQ +++P  A N V FR FG L G V LRG      D  + V+  F PP+++   +  L ++ G  SSV L  TY+DERV
Sbjct:   59 AASSAAVSPAPAETVPQPSSSADEARQLVDQVLKTIEGTDSGLQISPQARAHVDALLERLEVLGAAQQPRPLDNPLLWGNYNVAYTSVGKSQEHGEPAGGRFRGRIGRALFR----------TAGLFQSVLKPDLATNKVEFRLFGFLPGYVGLRGKVLPQGDTGDTVQVLFEPPMLSIANR--LHLKIGRFSSVVLTTTYLDERV 252
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BLAST of mRNA_E-fasciculatus_F_contig1208.1622.1 vs. uniprot
Match: A0A7R9V9J1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V9J1_9CHLO)

HSP 1 Score: 125 bits (314), Expect = 8.240e-32
Identity = 80/186 (43.01%), Postives = 106/186 (56.99%), Query Frame = 1 
Query:  205 AAELVTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLGEDKDWLNDSRVFGNYNVAYVSSGPSQ-RGNPAGGRWRGRLGRSLFRQALPPPHAIPTEEMFQHLVEPS----TAVNMVAFRAFGLLKGCVTLRGDFKAIPDKPN--FVKASFGPPLINFLGKHGLTIRSGPKSSVRLAATYVDERV 741
            A  L+ S+L   EGT+ G+    EQ+ E+DG + QL  LG  +  L D R+FGN+NV Y S+G +    +P+GGR+RG LGR LFR          TE +FQ ++         VN VAFR  GLL G V LRG  + +PD  +   VK +F PP+++F G  G  I  G  SSVRL  TY+D RV
Sbjct:   39 ADRLIDSVLEAAEGTDGGMSVAAEQRAELDGWVSQLGDLGRRQRPLKDERLFGNWNVVYTSTGKAAGNSSPSGGRFRGALGRLLFR----------TEGLFQSVLPGDDGAPVVVNKVAFRLLGLLPGYVALRGRAEPVPDDADDATVKVTFEPPVLSFGGSPGFRI--GRPSSVRLTTTYLDGRV 212
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BLAST of mRNA_E-fasciculatus_F_contig1208.1622.1 vs. uniprot
Match: A0A7S0QU31_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QU31_9CHLO)

HSP 1 Score: 129 bits (323), Expect = 1.040e-31
Identity = 74/179 (41.34%), Postives = 112/179 (62.57%), Query Frame = 1 
Query:  208 AELVTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLGEDKDWLNDSRVFGNYNVAYVSSGPSQRGNPAGGRWRGRLGRSLFRQALPPPHAIPTEEMFQHLVEPSTAVNMVAFRAFGLLKGCVTLRGDFKAIP-DKPNFVKASFGPPLINFLGKHGLTIRSGPKSSVRLAATYVDERV 741
            + LV  +L +I+ ++ G     E++  +D ++D+L  +G DK  L++  ++GNYNV+YVS+G SQ+GNPAGGR+RG+LG++LF+          T  + Q+L  P   VN V F+  G + G VTL+G     P D+  +V+A F PP I F+G   ++I  GPKSSV LA  Y+DER+
Sbjct:  100 SSLVDDVLERIKDSDSGAALAEEERASVDDMLDRLEEVG-DKAPLDNPLLWGNYNVSYVSAGKSQQGNPAGGRFRGKLGKALFQ----------TTVLEQNLYAPDVVVNKVGFKLLGFIPGQVTLKGSVTPEPADQKLWVRAKFEPPQIAFMGLPSVSI--GPKSSVVLATQYLDERI 265
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BLAST of mRNA_E-fasciculatus_F_contig1208.1622.1 vs. uniprot
Match: A0A8J4AX21_9CHLO (PAP_fibrillin domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AX21_9CHLO)

HSP 1 Score: 125 bits (314), Expect = 3.120e-30
Identity = 76/182 (41.76%), Postives = 108/182 (59.34%), Query Frame = 1 
Query:  205 AAELVTSLLGKIEGTNRGVDCTPEQQKEIDGIIDQLNTLGEDKDW--LNDSRVFGNYNVAYVSSGPSQ-RGNPAGGRWRGRLGRSLFRQALPPPHAIPTEEMFQHLVEPSTAVNMVAFRAFGLLKGCVTLRGDFKAIPDKPNFVKASFGPPLINFLGKHGLTIRSGPKSSVRLAATYVDERV 741
            A  +V  +L  IE T+ G+  +PE +  +D ++D+L TLG  +    L++  ++GNYNVAY S G SQ RG PAGGR+RGR+GR+LFR          T  +FQ +++P  A N V FR FG L G V LRG      D  + V+  F PP+++    + L ++ G  SSV L+ TY+DERV
Sbjct:   84 ARHIVDEVLEAIEATDSGLQISPEARTRVDSLLDRLETLGTTQQPRPLDNPLLWGNYNVAYTSVGRSQERGEPAGGRFRGRIGRALFR----------TAGLFQSVLKPDIATNKVEFRLFGFLPGYVGLRGRVLPQGDNGDTVQVIFEPPVLSIA--NSLHLKIGKPSSVVLSTTYLDERV 253
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1208.1622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G781_ECTSI3.140e-15391.09PAP_fibrillin domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JIG4_9PHAE3.510e-15190.24PAP_fibrillin domain-containing protein (Fragment)... [more]
A0A7S2Y058_9STRA5.320e-4043.09Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3UXI2_HETAK1.330e-3946.29Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A383V4T8_TETOB4.720e-3642.27PAP_fibrillin domain-containing protein n=1 Tax=Te... [more]
A0A250WT81_9CHLO6.070e-3342.22Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
D8TNC6_VOLCA5.840e-3240.29PAP_fibrillin domain-containing protein (Fragment)... [more]
A0A7R9V9J1_9CHLO8.240e-3243.01Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A7S0QU31_9CHLO1.040e-3141.34Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A8J4AX21_9CHLO3.120e-3041.76PAP_fibrillin domain-containing protein n=1 Tax=Vo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1208contigE-fasciculatus_F_contig1208:67..3863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score439.9
Seed ortholog evalue7.9e-121
Seed eggNOG ortholog2880.D7G781
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009534,GO:0009536,GO:0009579,GO:0009941,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.PAP_fibrillin
EggNOG OGs28JTJ@1,2QS7D@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionPlastid lipid-associated protein/fibrillin conserved domain
Ec32 orthologEc-01_010730.1
Exons5
Model size741
Cds size741
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1208.1622.1prot_E-fasciculatus_F_contig1208.1622.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1208 67..3863 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927716.6336582-CDS-E-fasciculatus_F_contig1208:66..2071622927716.6336582-CDS-E-fasciculatus_F_contig1208:66..207Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1208 67..207 -
1695995663.797234-CDS-E-fasciculatus_F_contig1208:66..2071695995663.797234-CDS-E-fasciculatus_F_contig1208:66..207Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1208 67..207 -
1622927716.6485367-CDS-E-fasciculatus_F_contig1208:928..10401622927716.6485367-CDS-E-fasciculatus_F_contig1208:928..1040Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1208 929..1040 -
1695995663.8084624-CDS-E-fasciculatus_F_contig1208:928..10401695995663.8084624-CDS-E-fasciculatus_F_contig1208:928..1040Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1208 929..1040 -
1622927716.663712-CDS-E-fasciculatus_F_contig1208:1730..19091622927716.663712-CDS-E-fasciculatus_F_contig1208:1730..1909Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1208 1731..1909 -
1695995663.8183172-CDS-E-fasciculatus_F_contig1208:1730..19091695995663.8183172-CDS-E-fasciculatus_F_contig1208:1730..1909Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1208 1731..1909 -
1622927716.675431-CDS-E-fasciculatus_F_contig1208:2461..26801622927716.675431-CDS-E-fasciculatus_F_contig1208:2461..2680Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1208 2462..2680 -
1695995663.8284283-CDS-E-fasciculatus_F_contig1208:2461..26801695995663.8284283-CDS-E-fasciculatus_F_contig1208:2461..2680Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1208 2462..2680 -
1622927716.6854095-CDS-E-fasciculatus_F_contig1208:3773..38631622927716.6854095-CDS-E-fasciculatus_F_contig1208:3773..3863Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1208 3774..3863 -
1695995663.838267-CDS-E-fasciculatus_F_contig1208:3773..38631695995663.838267-CDS-E-fasciculatus_F_contig1208:3773..3863Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1208 3774..3863 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1208.1622.1

>prot_E-fasciculatus_F_contig1208.1622.1 ID=prot_E-fasciculatus_F_contig1208.1622.1|Name=mRNA_E-fasciculatus_F_contig1208.1622.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=247bp
MWNAVWVFLLIAYPPVLSFSFAGVALQSNKAAVRRAVRRVSVGTAASSAE
AGPPPAIGGDGPADDGSAAAELVTSLLGKIEGTNRGVDCTPEQQKEIDGI
IDQLNTLGEDKDWLNDSRVFGNYNVAYVSSGPSQRGNPAGGRWRGRLGRS
LFRQALPPPHAIPTEEMFQHLVEPSTAVNMVAFRAFGLLKGCVTLRGDFK
AIPDKPNFVKASFGPPLINFLGKHGLTIRSGPKSSVRLAATYVDERV
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mRNA from alignment at E-fasciculatus_F_contig1208:67..3863-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1208.1622.1 ID=mRNA_E-fasciculatus_F_contig1208.1622.1|Name=mRNA_E-fasciculatus_F_contig1208.1622.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3797bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1208:67..3863- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGGAACGCGGTGTGGGTGTTCCTGCTCATCGCGTACCCACCGGTGCT
CTCGTTCTCGTTTGCTGGGGTTGCACTTCAAAGCAACAAGGTACGGACTT
GCGTTGCGTTCGGATTGTTCATGTGCAGCTACACGTTCAACGACGTTCCT
GCCAGTGTATGAGTTCCAATGTTCCAGCATGTTCCAATACAGAAGCGCAT
GTTTCATACTTCATATACATACCTGCGGTGTACGAGAGTGGGGACTGCTG
TTACACGAGGATTGGCCCACTGGATTTCTAGAGCCGCATCGTTGCGGCAG
TTATTTGCCGCATTGGATCATATAGTCGGGCCGGCGACTTGTATGCAAAA
GGTACAACTTGCTGGCACGTACACAGCAGCAGCACCGGCTTCCCGCCGCC
TCCCTTAGAAGAAGAGAAACACCTGGTTCTGATCGAGGCCCCAAGCCGTA
CAAGCAGTGTCAAGCCGTACAAGCAGTGTCTCAACGATTGGGCACAGGCT
ACAATGCTAAGGCGTCGTATGACTTTGGTGTGGTACCCGCGACTGACCCC
ATCATCTATCGTCTATCAACTACGCCAATCTCTGGTGTCTTTCAACAATA
CTCGAGTATGACGTGACGAGCCTCCTAAGTTTCTGAGAAGCGCGCTGCAT
GTCTGCAGCAGTAACGCCGCACCACCCGCGCTTGGATATTCCCTTATTTT
TCGAGGGTTCTTGACTGGCCAACTGAGAAGTGAAGCACACGGAATAGTAT
CGAATTACCCACAGGGGAGATATCGCTGTGTGCTTCTTAGATAGAGATGG
GTTCGTTGTGTCATATTAAGAACAATAAAAAAATAATATCGAATTGAACG
GAATACTTCTGTGCTGCTCGCCGGCCGTGGCACTGTTCCAGGCACCTTGC
CTTGTGTGTGTGCCGGGACGGAAACACAGCTCGGCTCGATCGTTCTCAAA
TGTGACGAGGGCTGTGTCGGGTTGACCCTTACCACGTGTTGGAGGTCGAG
GGGGGCAACGGCGCATACTCACATCCTGTACCTGAGTGCTATGCAATTCA
CGGTGCACACAAGGGCGCGGCGTGATACAACTGCTGTCTTCCCTGCGTCG
TAACACCACAACAGTTATAGCAAATCCGCGTTCCTACGCACACAATGAAT
ACAATATGGCGAGATCTGTTTTTGTCTTGGCAGGCAGCGGTTCGGAGAGC
GGTGCGGAGGGTTTCGGTCGGAACGGCCGCGTCGTCTGCGGAGGCCGGGC
CGCCGCCAGCCATCGGCGGCGATGGTCCTGCGGATGACGGGAGCGCGGCG
GCGGAGCTCGTGACCTCGCTGCTGGGGAAGATCGAGGGCACCAACAGAGG
AGTAGACTGCACGCCCGAACAACAGAAGGAAATTGACGGAATCATCGACC
AGGTCCGCCTGAGATCCATCCGTCCCCCGGCGGTGGCTTGTTTTCTCCTC
TGCTGCATCTGAATCGTATATTGTAGCAACCTAACAGGGGGGAGTTGAGG
ACCGAGCAGAGTCAGGACTCCCTACAGTACCAGTCGGGTGTCACCTTCAA
CTCCTTCCCCCCCCTTTTAATCCTCGTTGGTATCTACGGCGGTGCAGCAG
CAGCTGTGTTTGATGGCACCCAACACAGGTTCGCATTCAAAACCTTCAAG
ACCAGATGTCGTGGTGCGATGCATACAAAGTCGAGAGTGTTTGAATTGTG
GCACGTGTATGTCACCACCAAAAAACGTTTCCATCCTTGCCACTTTTTTG
CTCAATCGCGTGTCATAGAATGATGCTTGGCGTTTGGCATCCTTCTTTTT
TTTTTGTTTATTTGGCAAGCGACGCATCATCAGGGGGTAAAGCCTGCTGC
TTGCTGTCCCGGTATCCTCGGCAAATCCGATCCCAATGCTACTAACCTCA
CCTCTGTCCCACGGCACTGTCAACGGTGACCCCCTTGTGCCCTACTGCCG
ACAGCTCAACACCTTGGGCGAGGACAAAGACTGGTTGAACGACAGCCGCG
TCTTCGGAAACTACAACGTCGCGTACGTGAGCTCGGGCCCCTCGCAGCGG
GGCAACCCAGCGGGAGGCCGGTGGAGGGGCCGGCTAGGCCGCTCTCTATT
CAGGCAAGCGCTCCCCCCCCCCCACGCCATACCGTTGTTTCCCGCTTTTT
GCAAGGGAAAGCTTGCTGGCACCGCGGCAAATGGGTGCGTCTGCGTGTCT
CTTGAAGCTACGATGGGCGACCAGTCACTGCGTATCCGGGCTTGCCCCTA
TGCCAAAAGGCTTCGCACCGCTGGCTATATAGGCTTCTGTAATGCATCAA
TCGCTCCGCGTGGGCCATGTTGACAAGAAGTCTCACTACTCTGAAAGCTA
CGGCTATGACTGAGGGTGCCTCTTGGCGCCAGGAGAAAACCTCGACCTTC
GGCATTTGTGCACCTCCTCCGCTTCCAGCAAGTTATAAATAGTGCGCGAT
CGCACGCGTTGCCCTGTGTTTTTTTGTGTGTGTTTTCGTCCTACATAGTT
ATATGGCGACATGACAGCATCCCCCCCATTTTCCATGGTGAGACGTGCTA
AAACGTGTTTCAGTGTATGTAGAGTACACTTGTCAGTGCTGGCGTAGTGT
TATGTAAAGGTATCTAACTGCTGTAGCCATCACCTTTTGCTGCAGCCGCG
TTTGTTTTTTCCGCCTGGTCCAACGCAACACACGGGTTTCACCAACTATT
ATCAAAAATCAAATGTGATTAACAGGATAACCTGCCAGCAAATCTTCTCG
CGCACGGAACTCGCGTGCCCACTACCCTTATTAATAGTCACCCTCGTCAC
TCTAACCCTGCTGGTCTGAGCAGGACGGAGGAGATGTTCCAGCATCTCGT
GGAGCCCTCAACGGCGGTTAACATGGTCGCCTTCAGGGCGTTCGGACTGC
TTAAGGGGTGTGTCACCTTGCGAGGCGACTTCAAGGTGCGCCGGCCTTTG
TCGCTAGCATCGTCCTGTTCTGGTTCAGGAAACGCCCTGACACTTCGACA
CGTTTGCAACGGTTCAGAAACAAACAGAGAGGGAACATGCGGCGGTGCTG
TCTATAGCGATGGATGGCACCGTGGAGGATCACGTCGTTTCTAGCGTTCT
GCAAGAGGAAAAGGCACCGTTAGTTGAAGGACCACAAGACGCGCTCCTGA
TTAAGGGTAAGGGCCTTCAACCCCCAAAACCTTAACCTTGGCCGTTGACA
GAGGAAGTTGCGTCGGGTCGAGGTTCTCACCCTCCCCGTCTTTCTCTGTT
TTTTTGCTTGTCGAAGCCGCACCGGAACGCGTGCTGCCGGCGGTATTGTG
CATGCGGTGTGTTGTGGGGTGCTGCTTGCTTACCTCCTCGTTGGTTTGCT
GCATTGAGTTGTTGCTGGCGCGCCATCGAAGCACCTACTGCTGCCACGTG
CTACCGCCTGGGCCGTTGTCCACTACGTGCGTCTCCACCGGGCGTGAATG
TATATCTCTAAAAACCTACACCACCGAAGGGATCTGTCTGAACACGCGCC
GCCGACAAACAAGTCACCGTGCGAAAAACGTGACCTCCCCATGGCCGCCT
TGCTGAAAGATGAAAAGTTGCACGCTGCATGTAAGCTTGTTTGGCCCGCT
GCTGCTCGTCGTGCTGCACCCAACCTTTCGCGGCGTATGCATACATACAT
ACATAGGCGATTCCGGACAAGCCTAACTTTGTCAAGGCTTCCTTCGGACC
GCCGCTGATAAACTTCCTGGGGAAACACGGCCTGACGATCCGGTCGGGGC
CCAAGAGCAGCGTAAGGCTTGCGGCAACCTACGTGGATGAGAGGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1208:67..3863-

>mRNA_E-fasciculatus_F_contig1208.1622.1 ID=mRNA_E-fasciculatus_F_contig1208.1622.1|Name=mRNA_E-fasciculatus_F_contig1208.1622.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1482bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1208:67..3863- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGGAACGCGGTGTGGGTGTTCCTGCTCATCGCGTACCCACCGGTGCT
CTCGTTCTCGTTTGCTGGGGTTGCACTTCAAAGCAACAAGATGTGGAACG
CGGTGTGGGTGTTCCTGCTCATCGCGTACCCACCGGTGCTCTCGTTCTCG
TTTGCTGGGGTTGCACTTCAAAGCAACAAGGCAGCGGTTCGGAGAGCGGT
GCGGAGGGTTTCGGTCGGAACGGCCGCGTCGTCTGCGGAGGCCGGGCCGC
CGCCAGCCATCGGCGGCGATGGTCCTGCGGATGACGGGAGCGCGGCGGCG
GAGCTCGTGACCTCGCTGCTGGGGAAGATCGAGGGCACCAACAGAGGAGT
AGACTGCACGCCCGAACAACAGAAGGAAATTGACGGAATCATCGACCAGG
CAGCGGTTCGGAGAGCGGTGCGGAGGGTTTCGGTCGGAACGGCCGCGTCG
TCTGCGGAGGCCGGGCCGCCGCCAGCCATCGGCGGCGATGGTCCTGCGGA
TGACGGGAGCGCGGCGGCGGAGCTCGTGACCTCGCTGCTGGGGAAGATCG
AGGGCACCAACAGAGGAGTAGACTGCACGCCCGAACAACAGAAGGAAATT
GACGGAATCATCGACCAGCTCAACACCTTGGGCGAGGACAAAGACTGGTT
GAACGACAGCCGCGTCTTCGGAAACTACAACGTCGCGTACGTGAGCTCGG
GCCCCTCGCAGCGGGGCAACCCAGCGGGAGGCCGGTGGAGGGGCCGGCTA
GGCCGCTCTCTATTCAGGCAAGCGCTCCCCCCCCCCCACGCCATACCCTC
AACACCTTGGGCGAGGACAAAGACTGGTTGAACGACAGCCGCGTCTTCGG
AAACTACAACGTCGCGTACGTGAGCTCGGGCCCCTCGCAGCGGGGCAACC
CAGCGGGAGGCCGGTGGAGGGGCCGGCTAGGCCGCTCTCTATTCAGGCAA
GCGCTCCCCCCCCCCCACGCCATACCGACGGAGGAGATGTTCCAGCATCT
CGTGGAGCCCTCAACGGCGGTTAACATGGTCGCCTTCAGGGCGTTCGGAC
TGCTTAAGGGGTGTGTCACCTTGCGAGGCGACTTCAAGGACGGAGGAGAT
GTTCCAGCATCTCGTGGAGCCCTCAACGGCGGTTAACATGGTCGCCTTCA
GGGCGTTCGGACTGCTTAAGGGGTGTGTCACCTTGCGAGGCGACTTCAAG
GCGATTCCGGACAAGCCTAACTTTGTCAAGGCTTCCTTCGGACCGCCGCT
GATAAACTTCCTGGGGAAACACGGCCTGACGATCCGGTCGGGGCCCAAGA
GCAGCGTAAGGCTTGCGGCAACCTACGTGGATGAGAGGGTGGCGATTCCG
GACAAGCCTAACTTTGTCAAGGCTTCCTTCGGACCGCCGCTGATAAACTT
CCTGGGGAAACACGGCCTGACGATCCGGTCGGGGCCCAAGAGCAGCGTAA
GGCTTGCGGCAACCTACGTGGATGAGAGGGTG
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