mRNA_E-fasciculatus_F_contig12078.1621.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12078.1621.1
Unique NamemRNA_E-fasciculatus_F_contig12078.1621.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12078.1621.1 vs. uniprot
Match: D8LCG5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCG5_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 6.460e-42
Identity = 76/79 (96.20%), Postives = 77/79 (97.47%), Query Frame = 1
Query:   28 ANATNSITVAAPLDVIKVRVQNRPFDSPESGMAIVRKLLATEGPGAFFKGLTPKIIVVGPKLIFSFTVAQRLISFLEHS 264
            A A +SITVAAPLDVIKVRVQNRPFDSPESGMAIVRKLLATEGPGAFFKGLTPKIIVVGPKLIFSFTVAQRLISFLEHS
Sbjct:  231 AGAVSSITVAAPLDVIKVRVQNRPFDSPESGMAIVRKLLATEGPGAFFKGLTPKIIVVGPKLIFSFTVAQRLISFLEHS 309          
BLAST of mRNA_E-fasciculatus_F_contig12078.1621.1 vs. uniprot
Match: A0A7S2V7P4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7P4_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.850e-30
Identity = 59/82 (71.95%), Postives = 67/82 (81.71%), Query Frame = 1
Query:   13 FVRVFANATNSITVAAPLDVIKVRVQNRPFDSPESGMAIVRKLLATEGPGAFFKGLTPKIIVVGPKLIFSFTVAQRLISFLE 258
            FV     AT+SITVAAPLDVIK R+QNRPFDSPESGM I+  L+  EG GAFFKGLTPK+ VVGPKLIFSFT+AQ++IS  E
Sbjct:  264 FVASICGATSSITVAAPLDVIKTRIQNRPFDSPESGMKILNDLIKNEGFGAFFKGLTPKLAVVGPKLIFSFTIAQQMISVFE 345          
BLAST of mRNA_E-fasciculatus_F_contig12078.1621.1 vs. uniprot
Match: A0A4V1J4J8_9FUNG (Mitochondrial carrier domain-containing protein n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4V1J4J8_9FUNG)

HSP 1 Score: 115 bits (287), Expect = 3.610e-29
Identity = 54/73 (73.97%), Postives = 65/73 (89.04%), Query Frame = 1
Query:   34 ATNSITVAAPLDVIKVRVQNRPFDSPESGMAIVRKLLATEGPGAFFKGLTPKIIVVGPKLIFSFTVAQRLISF 252
            A  SITVAAPLDV+K R+QN+PFD+PESGM+I+ K++  EG GAFFKGLTPKI+VVGPKLIFSFT+AQ+LI F
Sbjct:  233 AVASITVAAPLDVVKTRIQNKPFDAPESGMSIISKMVRNEGMGAFFKGLTPKILVVGPKLIFSFTIAQQLIPF 305          
BLAST of mRNA_E-fasciculatus_F_contig12078.1621.1 vs. uniprot
Match: A0A3F2RML0_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RML0_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.010e-28
Identity = 57/84 (67.86%), Postives = 66/84 (78.57%), Query Frame = 1
Query:   13 FVRVFANATNSITVAAPLDVIKVRVQNRPFDSPESGMAIVRKLLATEGPGAFFKGLTPKIIVVGPKLIFSFTVAQRLISFLEHS 264
            FV   + A+ SI VA PLDVIK R+Q+RPFDSPESGM+IVR LL TEGP A FKGL PK+ VVGPKL+FSF VAQ LI++ E S
Sbjct:  218 FVASISGASASIIVAQPLDVIKTRIQSRPFDSPESGMSIVRNLLKTEGPAAMFKGLIPKLSVVGPKLVFSFAVAQHLIAYFEKS 301          
BLAST of mRNA_E-fasciculatus_F_contig12078.1621.1 vs. uniprot
Match: H3H0V9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H0V9_PHYRM)

HSP 1 Score: 108 bits (271), Expect = 6.240e-28
Identity = 55/84 (65.48%), Postives = 64/84 (76.19%), Query Frame = 1
Query:   13 FVRVFANATNSITVAAPLDVIKVRVQNRPFDSPESGMAIVRKLLATEGPGAFFKGLTPKIIVVGPKLIFSFTVAQRLISFLEHS 264
            FV   + A+ SI VA PLDVIK R+Q+RPFDSPESGM +VR LL +EG GA FKGL PK+ VVGPKL+FSF VAQ LI+  E S
Sbjct:  114 FVASISGASASIIVAQPLDVIKTRIQSRPFDSPESGMTVVRNLLKSEGTGALFKGLIPKLSVVGPKLVFSFAVAQHLIAHFEKS 197          
BLAST of mRNA_E-fasciculatus_F_contig12078.1621.1 vs. uniprot
Match: A0A1Y1Y8U0_9FUNG (Mitochondrial carrier n=2 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y8U0_9FUNG)

HSP 1 Score: 111 bits (278), Expect = 7.390e-28
Identity = 52/71 (73.24%), Postives = 64/71 (90.14%), Query Frame = 1
Query:   34 ATNSITVAAPLDVIKVRVQNRPFDSPESGMAIVRKLLATEGPGAFFKGLTPKIIVVGPKLIFSFTVAQRLI 246
            A  SITVAAPLDV+K R+QN+PFD+PESG++I++ ++  EG GAFFKGLTPKI+VVGPKLIFSFTVAQ+LI
Sbjct:  231 AVASITVAAPLDVVKTRIQNKPFDAPESGVSIIKNMVKNEGMGAFFKGLTPKILVVGPKLIFSFTVAQQLI 301          
BLAST of mRNA_E-fasciculatus_F_contig12078.1621.1 vs. uniprot
Match: A0A484EAI5_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EAI5_BRELC)

HSP 1 Score: 110 bits (276), Expect = 1.110e-27
Identity = 53/84 (63.10%), Postives = 68/84 (80.95%), Query Frame = 1
Query:   13 FVRVFANATNSITVAAPLDVIKVRVQNRPFDSPESGMAIVRKLLATEGPGAFFKGLTPKIIVVGPKLIFSFTVAQRLISFLEHS 264
            FV     A++SI V+ PLDVIK R+Q+RPF+SP+SGM +VR+LL  EGPGA FKGL PK+ VVGPKL+FSFTVAQ LI++ E++
Sbjct:  219 FVASILGASSSILVSQPLDVIKTRIQSRPFNSPKSGMTVVRELLRAEGPGALFKGLIPKLSVVGPKLVFSFTVAQHLIAYFENA 302          
BLAST of mRNA_E-fasciculatus_F_contig12078.1621.1 vs. uniprot
Match: A0A2R5GNS0_9STRA (Mitochondrial GTP/GDP carrier protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GNS0_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.900e-27
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 1
Query:   13 FVRVFANATNSITVAAPLDVIKVRVQNRPFDSPESGMAIVRKLLATEGPGAFFKGLTPKIIVVGPKLIFSFTVAQRLISFLE 258
            FV     A  SITVA+P+DVIK R+Q+RPFDSPE+GM I+R  L  EG  AFFKGLTPKI+VVGPKLIFSFTVAQ +++F E
Sbjct:  232 FVASIVGAVTSITVASPVDVIKTRIQSRPFDSPETGMQIIRNALREEGFTAFFKGLTPKILVVGPKLIFSFTVAQSVMNFFE 313          
BLAST of mRNA_E-fasciculatus_F_contig12078.1621.1 vs. uniprot
Match: A0A077WSJ9_9FUNG (Uncharacterized protein n=2 Tax=Mucorales TaxID=4827 RepID=A0A077WSJ9_9FUNG)

HSP 1 Score: 110 bits (274), Expect = 2.400e-27
Identity = 54/77 (70.13%), Postives = 64/77 (83.12%), Query Frame = 1
Query:   34 ATNSITVAAPLDVIKVRVQNRPFDSPESGMAIVRKLLATEGPGAFFKGLTPKIIVVGPKLIFSFTVAQRLISFLEHS 264
            A  SITVAAPLDV+K R+QNR FD+PESG+ I++ L+  EG G FFKGLTPKI+VVGPKLIFSFTVAQ+LI F + S
Sbjct:  231 AVASITVAAPLDVVKTRIQNRNFDNPESGLNIIKDLIKKEGFGGFFKGLTPKILVVGPKLIFSFTVAQQLIPFFDKS 307          
BLAST of mRNA_E-fasciculatus_F_contig12078.1621.1 vs. uniprot
Match: A0A7S3V813_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V813_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.720e-27
Identity = 51/75 (68.00%), Postives = 62/75 (82.67%), Query Frame = 1
Query:   28 ANATNSITVAAPLDVIKVRVQNRPFDSPESGMAIVRKLLATEGPGAFFKGLTPKIIVVGPKLIFSFTVAQRLISF 252
            A A  SITVA PLDV+K R+QNRPFDSPESG +I+ KL+  EG G FFKGLTPK++VVGPKL+FSFT+AQ  I++
Sbjct:  256 AGAVASITVAQPLDVVKTRIQNRPFDSPESGTSIISKLIKNEGTGGFFKGLTPKLMVVGPKLVFSFTIAQHTIAY 330          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12078.1621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCG5_ECTSI6.460e-4296.20Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V7P4_9STRA3.850e-3071.95Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4V1J4J8_9FUNG3.610e-2973.97Mitochondrial carrier domain-containing protein n=... [more]
A0A3F2RML0_9STRA1.010e-2867.86Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
H3H0V9_PHYRM6.240e-2865.48Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A1Y1Y8U0_9FUNG7.390e-2873.24Mitochondrial carrier n=2 Tax=Basidiobolus meristo... [more]
A0A484EAI5_BRELC1.110e-2763.10Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A2R5GNS0_9STRA1.900e-2767.07Mitochondrial GTP/GDP carrier protein 1 n=1 Tax=Ho... [more]
A0A077WSJ9_9FUNG2.400e-2770.13Uncharacterized protein n=2 Tax=Mucorales TaxID=48... [more]
A0A7S3V813_9STRA2.720e-2768.00Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12078contigE-fasciculatus_F_contig12078:523..1146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.7
Seed ortholog evalue4.9e-33
Seed eggNOG ortholog2880.D8LCG5
Preferred nameYHM1
KEGG koko:K15107
KEGG TC2.A.29.14.3
GOsGO:0000002,GO:0001408,GO:0001409,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006839,GO:0006862,GO:0006863,GO:0006873,GO:0006875,GO:0006879,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0015215,GO:0015216,GO:0015605,GO:0015748,GO:0015851,GO:0015854,GO:0015865,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0016043,GO:0019725,GO:0019866,GO:0022857,GO:0030003,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046916,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071702,GO:0071705,GO:0071840,GO:0072530,GO:0098771,GO:0140140,GO:1901679,GO:1903716,GO:1903790,GO:1904823,GO:1990542
EggNOG free text desc.high-affinity glutamate transmembrane transporter activity
EggNOG OGsKOG0750@1,KOG0750@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorymitochondrion
Exons2
Model size264
Cds size264
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927716.5761201-CDS-E-fasciculatus_F_contig12078:522..7021622927716.5761201-CDS-E-fasciculatus_F_contig12078:522..702Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12078 523..702 +
1695995663.7718983-CDS-E-fasciculatus_F_contig12078:522..7021695995663.7718983-CDS-E-fasciculatus_F_contig12078:522..702Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12078 523..702 +
1622927716.5889595-CDS-E-fasciculatus_F_contig12078:1062..11461622927716.5889595-CDS-E-fasciculatus_F_contig12078:1062..1146Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12078 1063..1146 +
1695995663.7846835-CDS-E-fasciculatus_F_contig12078:1062..11461695995663.7846835-CDS-E-fasciculatus_F_contig12078:1062..1146Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12078 1063..1146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12078.1621.1prot_E-fasciculatus_F_contig12078.1621.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12078 523..1146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12078.1621.1

>prot_E-fasciculatus_F_contig12078.1621.1 ID=prot_E-fasciculatus_F_contig12078.1621.1|Name=mRNA_E-fasciculatus_F_contig12078.1621.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=88bp
MRTLFVRVFANATNSITVAAPLDVIKVRVQNRPFDSPESGMAIVRKLLAT
EGPGAFFKGLTPKIIVVGPKLIFSFTVAQRLISFLEHS
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mRNA from alignment at E-fasciculatus_F_contig12078:523..1146+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12078.1621.1 ID=mRNA_E-fasciculatus_F_contig12078.1621.1|Name=mRNA_E-fasciculatus_F_contig12078.1621.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=624bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12078:523..1146+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGGACGTTGTTTGTGCGTGTGTTTGCCAATGCTACGAACAGCATCAC CGTTGCAGCCCCGCTTGACGTGATCAAGGTTCGAGTCCAGAACCGCCCGT TCGATTCGCCCGAGAGCGGGATGGCTATCGTACGCAAGCTCCTTGCGACC GAGGGACCGGGCGCCTTCTTCAAGGGATTGGTAAGTTTGATTGAGCCGCA CGTGCGCCGCGGCAGGTGACTGATGCAAAGGTAGAACCAGAACGACCCCC CTTCTGAAAATGACTGCACAACGTTTTGAAGTGTGATGCGCCGTCGTCGA CCACATCGAAGATGTCGTCGAAACGCGGGTTGTATTTTCTCTGTGGAGTA GTATCATTTTTGGCTGAGCACCTACAGCCAAGTTCTTGCCTTTCGTTTTA CACCCCATTTCTATCCGACGTTCCACACACGGCGCCCCCATTCCTTATCA TTCGGTTTTCGTCGGGTCGGGTCGTACTCAAAACCCTACAACAACTGACA CCATGGTGTGGTGTAATGTCACGGCCGCATGGCGAAACAGACGCCGAAGA TCATCGTGGTGGGGCCGAAGCTCATTTTCTCCTTCACGGTGGCGCAGCGC CTCATCTCCTTCCTGGAGCACTCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12078:523..1146+

>mRNA_E-fasciculatus_F_contig12078.1621.1 ID=mRNA_E-fasciculatus_F_contig12078.1621.1|Name=mRNA_E-fasciculatus_F_contig12078.1621.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=528bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12078:523..1146+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGGACGTTGTTTGTGCGTGTGTTTGCCAATGCTACGAACAGCATCAC
CGTTGCAGCCCCGCTTGACGTGATCAAGGTTCGAGTCCAGAACCGCCCGT
TCGATTCGCCCGAGAGCGGGATGGCTATCGTACGCAAGCTCCTTGCGACC
GAGGGACCGGGCGCCTTCTTCAAGGGATTGATGCGGACGTTGTTTGTGCG
TGTGTTTGCCAATGCTACGAACAGCATCACCGTTGCAGCCCCGCTTGACG
TGATCAAGGTTCGAGTCCAGAACCGCCCGTTCGATTCGCCCGAGAGCGGG
ATGGCTATCGTACGCAAGCTCCTTGCGACCGAGGGACCGGGCGCCTTCTT
CAAGGGATTGACGCCGAAGATCATCGTGGTGGGGCCGAAGCTCATTTTCT
CCTTCACGGTGGCGCAGCGCCTCATCTCCTTCCTGGAGCACTCGACGCCG
AAGATCATCGTGGTGGGGCCGAAGCTCATTTTCTCCTTCACGGTGGCGCA
GCGCCTCATCTCCTTCCTGGAGCACTCG
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