|
|
Homology
BLAST of mRNA_E-fasciculatus_F_contig12076.1620.1 vs. uniprot
Match: D7G3D4_ECTSI (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D4_ECTSI) HSP 1 Score: 298 bits (763), Expect = 1.040e-87 Identity = 259/344 (75.29%), Postives = 266/344 (77.33%), Query Frame = 1
Query: 10 GGGSSHAGEVFRGNESLHLRRLLRVVEHGASLLDKNDDVDAAATPAXXXXXXXXXXXGEAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----PGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKGQKASFILSPEEAAWIRRGLELPMQAMGNTQPSLKEADKGRLESFRLRQACALKRSRRAARECFEEAVAGAGGRLDGREGGLGATPKTRRWSERLSPHSASALESVWESDAVWPLMQTPLLSWDLTTLLVGGVSMARSWSDKAGVARAVCLARLCQVLLQPELCLRGPGG 1026
GGGSSHA E FRGNESLHLRRLLRVVEHG SLLD N+DVDAAATPA XXXXXX XXXXXXXXXXXXXXXXX PGDG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXX +K+SF+LSPEEA WIRRGLELPMQAMGNTQP LKEADKGRLESFRLRQA ALKR R+AARECFEEA AG G KT WSERLSP SASALESVWE DAVWPLMQTPLLSWDLTTLLVG VSMARSWS++AGVARAVCLARLCQ LLQPELCLRGPGG
Sbjct: 832 GGGSSHAREAFRGNESLHLRRLLRVVEHGTSLLDHNNDVDAAATPAVAASTXXXXXXXXXXXXXXXXXXXXXXXXXXXGPVAGGNAGAVSAAQEQLQGAAAVLPGDGDGRDGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLGRIXXXXXXXXXXXXXXXXXXXXXXXXXGQKKSSFVLSPEEATWIRRGLELPMQAMGNTQPDLKEADKGRLESFRLRQAYALKRPRQAARECFEEAAAG------------GLASKTSSWSERLSPESASALESVWEPDAVWPLMQTPLLSWDLTTLLVGSVSMARSWSNRAGVARAVCLARLCQALLQPELCLRGPGG 1163
BLAST of mRNA_E-fasciculatus_F_contig12076.1620.1 vs. uniprot
Match: A0A6H5K8R4_9PHAE (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8R4_9PHAE) HSP 1 Score: 286 bits (731), Expect = 2.120e-83 Identity = 260/341 (76.25%), Postives = 269/341 (78.89%), Query Frame = 1
Query: 13 GGSSHAGEVFRGNESLHLRRLLRVVEHGASLLDKNDDVDAAATPAXXXXXXXXXXXGEAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKGQK---ASFILSPEEAAWIRRGLELPMQAMGNTQPSLKEADKGRLESFRLRQACALKRSRRAARECFEEAVAGAGGRLDGREGGLGATPKTRRWSERLSPHSASALESVWESDAVWPLMQTPLLSWDLTTLLVGGVSMARSWSDKAGVARAVCLARLCQVLLQPELCLRGPGG 1026
GGSSHAGE FRGNESLHLRRLLRVVEHGASLLD N++VDAA XXXXXXXXXXX XXXXXXXXXXXXX PGDG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +SFILSPEEA W+RR LELPMQAMGNTQP LKEADKGRLESFRLRQA ALKR R+AARECFEEA AG GAT KT WSERLSP SASALESVWESDAVWPLMQ P+LSWDLTTL+VGGVSMARSWS++AGVARAVCLARLCQ LLQPELCLRGPGG
Sbjct: 1719 GGSSHAGEAFRGNESLHLRRLLRVVEHGASLLDHNNNVDAAXXXXXXXXXXXXXXX----------XXXXXXXXXXXXXAGAVSEAQQQLQGAAAVLPGDGDGRDVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSFILSPEEATWMRRALELPMQAMGNTQPDLKEADKGRLESFRLRQAYALKRPRQAARECFEEAAAG------------GATSKTSSWSERLSPESASALESVWESDAVWPLMQIPILSWDLTTLVVGGVSMARSWSNRAGVARAVCLARLCQALLQPELCLRGPGG 2037
BLAST of mRNA_E-fasciculatus_F_contig12076.1620.1 vs. uniprot
Match: A0A836CB31_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB31_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 3.940e-7 Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 1
Query: 853 WPLMQTPLLSWDLTTLLVGGVSMARSWSDKAGVARAVCLARLCQVLLQPELCLRG 1017
WP++Q PLL+WDL+TL ++ S + RAVCLARL Q+ +QPE CL G
Sbjct: 1869 WPVLQVPLLAWDLSTLAAALATLVHSAEQRRAAVRAVCLARLAQLCVQPEFCLLG 1923
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 299.3 |
| Seed ortholog evalue | 2.3e-78 |
| Seed eggNOG ortholog | 2880.D7G3D4 |
| KEGG ko | ko:K10625,ko:K10626,ko:K11978 |
| GOs | GO:0000003,GO:0000151,GO:0000280,GO:0001101,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006310,GO:0006325,GO:0006342,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007140,GO:0007141,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009966,GO:0009968,GO:0009987,GO:0010029,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010528,GO:0010529,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0016043,GO:0016458,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016597,GO:0016740,GO:0019216,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023057,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031406,GO:0032006,GO:0032007,GO:0032446,GO:0032501,GO:0032504,GO:0032991,GO:0033522,GO:0033993,GO:0034641,GO:0035825,GO:0036094,GO:0036211,GO:0040029,GO:0042221,GO:0043161,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043200,GO:0043201,GO:0043207,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0044703,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048232,GO:0048285,GO:0048519,GO:0048523,GO:0048580,GO:0048583,GO:0048585,GO:0048609,GO:0050789,GO:0050793,GO:0050794,GO:0050832,GO:0050896,GO:0050994,GO:0051171,GO:0051172,GO:0051239,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051603,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061630,GO:0061659,GO:0061982,GO:0065007,GO:0070647,GO:0070728,GO:0070887,GO:0071229,GO:0071230,GO:0071233,GO:0071310,GO:0071417,GO:0071495,GO:0071596,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097305,GO:0098542,GO:0140013,GO:0140096,GO:1900140,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1903046,GO:1903506,GO:1903507,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141 |
| EggNOG free text desc. | E3 ubiquitin-protein ligase |
| EggNOG OGs | KOG1139@1,KOG1139@2759 |
| EC | 2.3.2.27 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko01000,ko04121 |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 1031 |
| Cds size | 1029 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12076.1620.1 >prot_E-fasciculatus_F_contig12076.1620.1 ID=prot_E-fasciculatus_F_contig12076.1620.1|Name=mRNA_E-fasciculatus_F_contig12076.1620.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=343bp
GGGGGGSSHAGEVFRGNESLHLRRLLRVVEHGASLLDKNDDVDAAATPAA AASPAALASEGEAPAAAAAAAAVAAGPVAGGNTGAAGAAEQQLQGAATQV VPGDGDADASSSSSPTTAGGSGGGAAAAAAVAPVGGVVAAIKLGRIIGGA AVVPPPEGIRALGGGGGGGGSKGQKASFILSPEEAAWIRRGLELPMQAMG NTQPSLKEADKGRLESFRLRQACALKRSRRAARECFEEAVAGAGGRLDGR EGGLGATPKTRRWSERLSPHSASALESVWESDAVWPLMQTPLLSWDLTTL LVGGVSMARSWSDKAGVARAVCLARLCQVLLQPELCLRGPGGG back to topmRNA from alignment at E-fasciculatus_F_contig12076:1291..4091+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig12076.1620.1 ID=mRNA_E-fasciculatus_F_contig12076.1620.1|Name=mRNA_E-fasciculatus_F_contig12076.1620.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2801bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12076:1291..4091+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) GGGGGTGGGGGGGGGGGCTCGTCTCACGCCGGGGAGGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTTTTTGTTTTTTGCTGTTCGTCTTGCTGT
TGTTGTTTTGTGGTTGTTGTTGATGTTGTTGTTGTTGTTGTTGTGGTTGT
TTCGGCATGTGTTGATGGTTCCCCGTTCTGCACCAAGCTTGCCGTGCGTG
TCTTCGTTTGCTGCTGATCGTACCGCGTACCGTTGGCCTTATGCTCAACA
CCAAGGAACCTCAACCGAATCTTGACCTAGCCTTGACACGCCTCTGAACC
CAACTTGGGGCACCGGACGGCCGAACCTTGTACAGGTTTTCCGGGGTAAC
GAGAGCCTCCACCTCCGAAGGCTTCTCAGAGTGGTGGAACACGGTGCGTC
CCTCCTCGACAAAAACGACGACGTCGACGCTGCCGCCACGCCAGCCGCAG
CAGCATCGCCAGCGGCGCTAGCCAGCGAGGGCGAGGCACCTGCAGCGGCG
GCGGCGGCGGCGGCGGTGGCTGCTGGGCCCGTAGCCGGCGGGAACACCGG
CGCCGCGGGTGCAGCCGAGCAGCAGCTGCAGGGGGCAGCAACGCAAGTAG
TGCCGGGCGATGGGGACGCGGATGCGTCCTCTTCCTCCTCTCCGACAACA
GCAGGAGGAAGCGGCGGAGGAGCCGCAGCGGCCGCGGCAGTGGCGCCGGT
GGGCGGAGTCGTGGCAGCGATCAAGCTGGGAAGAATAATTGGCGGGGCGG
CCGTGGTGCCGCCACCGGAAGGCATACGGGCTTTGGGCGGCGGCGGCGGC
GGCGGCGGGAGTAAGGGGCAGAAGGTGAGGGAGTTCGAAATGGGGCGTTC
GTTGTATGCAGTTGGCCGGGATGGTCTTGGCCATCTTGACGGGCCTGGCC
GTGCGGAGCACTGCCACAGCCACATACCACTTGTACCTCGGGTGTGTTTG
GGGAGCATGGTGGCGGCGATGGTGGTGGTGGTGGGAGGTGCTAGAGCTCA
CCAGCAGAGGACCTTCCGAGACGCGATGCCGCATTTCCCGAACATTGCAT
GTATGCATGTATGTAGCGTGTGGGGTTAGGCCTCTTGCTACAGGTTGCGT
CCTTTCGCTGAGGCAGTCGATGTCGGTGGTTCATCGTGAAACGTAATATT
GTGGTGCGTGTCTGCAAATGGTTCCTGTTACATCTTCGGTATCACCTCCT
CATGTTGTTGTTGTTTGTTGTTTTGGACAGAAGGCGTCCTTCATCTTGTC
CCCGGAGGAAGCCGCCTGGATTCGACGGGGTCTCGAGCTGCCAATGCAGG
TGCGAGTGTGAAATGATAACCCTATAAGGAAGAGCAAAGACGGGGATGTG
CAACATAACTTTTTTTTTTAAGAGAGGGCGGTCCGAATCATGGCGGTTGC
CGTACCATTTTGCATATGCCTGAATGCACCAAACAAATCCTCAAACAATC
CCTGCGTTACCACCACCACCACCACCACCACTCAACTAACAGGCTATGGG
AAACACCCAACCTTCTCTCAAGGAGGCTGACAAGGGGCGGCTTGAGTCTT
TCCGACTCAGGCAGGCCTGCGCGCTGAAAAGGTCGCGCCGTGCCGCCCGG
GAGTGCTTTGAGGAGGCGGTGGCAGGCGCGGGGGGTCGTCTTGACGGCAG
GGAGGGGGGGTTGGGGGCAACGCCCAAGACGAGGAGATGGAGCGAGGTAA
GTGGCGAGGGGAGCGGGAGTTGGTGGACAGTGTTGAATGTCGGTGGAATA
TATTGTCGTTGTCGTGACTGCTGCTGTTGCTGTTCCTGTGGCCTTGCCTA
TGCCCCCGTTCGTATTGAGTGTTACCATTTTAGCCCATTTAGCAAGAACG
TAGATAGAGCTGCTAAGATTCTCCCCTCGTTTATGTCCCCACCCCTTCCC
AAAAACCAAGCTAAGTGATGTGAAACTCGAATGTTATTTGTGTTGTTTTT
GTTTTTTGTTTGTTTTGTTTGTTTCTTCTTGACAGCGACTTTCTCCTCAC
TCAGCCTCGGCGCTGGAGAGCGTCTGGGAGTCGGACGCGGTGTGGCCTCT
GATGCAGGTGTGCGCGCTTAGATGGACGTACCTGTGCTGCGTTGTTGTCA
AGCTGCTTGCTGACTACTGCAACATTACTGCTGCTGTGGTTGACGCACTT
CTGTCGCAGTACACGTTGGTATTCGATGCCTGCGTAGTTTTGCATCAAGA
AGCACTCTGGTTGCGGTACACCGGAGACTTTGTACCAAGGGGCACGAGTA
AATCCCCGAACGGTTTCGTTTTAGAAGCAGAACACCCCTTTTTGTGTTTG
TGTCGCCATGTTTCCGAGGTACACGATATCGGTAGTCACGTTTGTAGTAC
AGGTATCGGTAGTCATCCCATGGCACCCCCTGCTTGCTGTTCGTTCTGGC
GCGCACCGCACACTTCCAATGCCGTTATTCCCCTGCCAAATATCAAGAAG
CACCACCTCCATCACCAGCATGATATCTATCATTGTACGTGCTAGTTCAT
GTGAACTGTATTCACCACAACCACAAACATAGTAGCAACAAACAACAACC
GACACGACATTGACCATCACCACCACCACCACCACCGATCGCAACGCCAG
CACTAACCACCACCACCACCACAAACCACAACGGCAGACGCCTCTTCTGT
CGTGGGACCTGACGACCCTCCTCGTGGGCGGTGTGAGCATGGCCCGATCC
TGGTCCGACAAGGCCGGGGTGGCGAGGGCCGTCTGCCTCGCGAGGCTCTG
CCAAGTCCTGCTCCAGCCCGAGCTGTGTCTGCGCGGGCCGGGGGGTGGCG
C back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig12076:1291..4091+ >mRNA_E-fasciculatus_F_contig12076.1620.1 ID=mRNA_E-fasciculatus_F_contig12076.1620.1|Name=mRNA_E-fasciculatus_F_contig12076.1620.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2058bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12076:1291..4091+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) GGGGGTGGGGGGGGGGGCTCGTCTCACGCCGGGGAGGGGGGTGGGGGGGG GGGCTCGTCTCACGCCGGGGAGGTTTTCCGGGGTAACGAGAGCCTCCACC TCCGAAGGCTTCTCAGAGTGGTGGAACACGGTGCGTCCCTCCTCGACAAA AACGACGACGTCGACGCTGCCGCCACGCCAGCCGCAGCAGCATCGCCAGC GGCGCTAGCCAGCGAGGGCGAGGCACCTGCAGCGGCGGCGGCGGCGGCGG CGGTGGCTGCTGGGCCCGTAGCCGGCGGGAACACCGGCGCCGCGGGTGCA GCCGAGCAGCAGCTGCAGGGGGCAGCAACGCAAGTAGTGCCGGGCGATGG GGACGCGGATGCGTCCTCTTCCTCCTCTCCGACAACAGCAGGAGGAAGCG GCGGAGGAGCCGCAGCGGCCGCGGCAGTGGCGCCGGTGGGCGGAGTCGTG GCAGCGATCAAGCTGGGAAGAATAATTGGCGGGGCGGCCGTGGTGCCGCC ACCGGAAGGCATACGGGCTTTGGGCGGCGGCGGCGGCGGCGGCGGGAGTA AGGGGCAGAAGGTTTTCCGGGGTAACGAGAGCCTCCACCTCCGAAGGCTT CTCAGAGTGGTGGAACACGGTGCGTCCCTCCTCGACAAAAACGACGACGT CGACGCTGCCGCCACGCCAGCCGCAGCAGCATCGCCAGCGGCGCTAGCCA GCGAGGGCGAGGCACCTGCAGCGGCGGCGGCGGCGGCGGCGGTGGCTGCT GGGCCCGTAGCCGGCGGGAACACCGGCGCCGCGGGTGCAGCCGAGCAGCA GCTGCAGGGGGCAGCAACGCAAGTAGTGCCGGGCGATGGGGACGCGGATG CGTCCTCTTCCTCCTCTCCGACAACAGCAGGAGGAAGCGGCGGAGGAGCC GCAGCGGCCGCGGCAGTGGCGCCGGTGGGCGGAGTCGTGGCAGCGATCAA GCTGGGAAGAATAATTGGCGGGGCGGCCGTGGTGCCGCCACCGGAAGGCA TACGGGCTTTGGGCGGCGGCGGCGGCGGCGGCGGGAGTAAGGGGCAGAAG GCGTCCTTCATCTTGTCCCCGGAGGAAGCCGCCTGGATTCGACGGGGTCT CGAGCTGCCAATGCAGGCGTCCTTCATCTTGTCCCCGGAGGAAGCCGCCT GGATTCGACGGGGTCTCGAGCTGCCAATGCAGGCTATGGGAAACACCCAA CCTTCTCTCAAGGAGGCTGACAAGGGGCGGCTTGAGTCTTTCCGACTCAG GCAGGCCTGCGCGCTGAAAAGGTCGCGCCGTGCCGCCCGGGAGTGCTTTG AGGAGGCGGTGGCAGGCGCGGGGGGTCGTCTTGACGGCAGGGAGGGGGGG TTGGGGGCAACGCCCAAGACGAGGAGATGGAGCGAGGCTATGGGAAACAC CCAACCTTCTCTCAAGGAGGCTGACAAGGGGCGGCTTGAGTCTTTCCGAC TCAGGCAGGCCTGCGCGCTGAAAAGGTCGCGCCGTGCCGCCCGGGAGTGC TTTGAGGAGGCGGTGGCAGGCGCGGGGGGTCGTCTTGACGGCAGGGAGGG GGGGTTGGGGGCAACGCCCAAGACGAGGAGATGGAGCGAGCGACTTTCTC CTCACTCAGCCTCGGCGCTGGAGAGCGTCTGGGAGTCGGACGCGGTGTGG CCTCTGATGCAGCGACTTTCTCCTCACTCAGCCTCGGCGCTGGAGAGCGT CTGGGAGTCGGACGCGGTGTGGCCTCTGATGCAGACGCCTCTTCTGTCGT GGGACCTGACGACCCTCCTCGTGGGCGGTGTGAGCATGGCCCGATCCTGG TCCGACAAGGCCGGGGTGGCGAGGGCCGTCTGCCTCGCGAGGCTCTGCCA AGTCCTGCTCCAGCCCGAGCTGTGTCTGCGCGGGCCGGGGGGTGGCACGC CTCTTCTGTCGTGGGACCTGACGACCCTCCTCGTGGGCGGTGTGAGCATG GCCCGATCCTGGTCCGACAAGGCCGGGGTGGCGAGGGCCGTCTGCCTCGC GAGGCTCTGCCAAGTCCTGCTCCAGCCCGAGCTGTGTCTGCGCGGGCCGG GGGGTGGC back to top
|