mRNA_E-fasciculatus_F_contig12067.1613.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12067.1613.1 vs. uniprot
Match: D7FT26_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT26_ECTSI) HSP 1 Score: 261 bits (666), Expect = 1.390e-74 Identity = 530/620 (85.48%), Postives = 548/620 (88.39%), Query Frame = 1
Query: 130 MVDVRNVKRHDSFGFRIPASSLALPSPAGGDAGGDQAGGKLPSTKRCSFPQCRKRPTYGMEGSKIAEFCAPHAEPGMVNVSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVRNTKXXXXXXXXXXXXXXXXXXXXXXXXXXXVEDRVMADDFATXXXXXXXXXXXXXPSGTGGGTATQLCADHAQPRAVGTRNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQDGMFDIRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDVRNVKXXXXXXXXXXXXXXXXXTKRSKAIXXXXXXXXXXXXXXXXXXXXXXXSSSNTGGGDEGRNGGGGVNDGVEEAAGYLIASTERNTNGSSTDQDSSSNRPGNPARLVEPIAAGLVVGDWVADGAVASKDDRMGAAHQQVEEQQEHYHQHDPEVGLRPGPAWESTDNAQGSARGESSTGFRRKRRMLDDV 1989
MVDVRNVKRHDSFG R+ ASSL+LPSPA GD GGDQ GGKLPSTKRCSFPQCRKRPTYG+EGSK AEFCAPHA+PGM XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVRNTKXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXX PSG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQDGMFDIRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDVRNVKXXXXXXXXXXXXXXXXXTKRSKA+XXXXXXXXXXXXXXXXXX SSSNT GG++G NGG V+DGV+EAAGYLIA+ ERNTNGSS ++DSSSNRPGNPAR+VEPIAAGLVVGDWVADGAVASKD+RMG A+Q VE+QQE + + PEVGL GPAWESTDNAQGSARGE S GFRRKRRMLDDV
Sbjct: 1 MVDVRNVKRHDSFGLRMQASSLSLPSPASGDVGGDQPGGKLPSTKRCSFPQCRKRPTYGVEGSKTAEFCAPHAQPGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVRNTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLP-PSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQDGMFDIRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDVRNVKXXXXXXXXXXXXXXXXXTKRSKAMXXXXXXXXXXXXXXXXXXMRDPVSSSNTVGGEDGGNGGDNVSDGVQEAAGYLIATAERNTNGSSANEDSSSNRPGNPARVVEPIAAGLVVGDWVADGAVASKDERMGEAYQLVEKQQEPHQEDTPEVGL--GPAWESTDNAQGSARGEPSAGFRRKRRMLDDV 617
BLAST of mRNA_E-fasciculatus_F_contig12067.1613.1 vs. uniprot
Match: A0A6H5KV69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV69_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 2.030e-6 Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 1
Query: 37 KCRHPSCNKQPSYGAAGTRKAQFCVQHAENGMVDV 141
KC HPSCNK PS+G +GTR+AQFC +HA G+VDV
Sbjct: 5 KCGHPSCNKNPSFGESGTRRAQFCAEHAPEGLVDV 39
BLAST of mRNA_E-fasciculatus_F_contig12067.1613.1 vs. uniprot
Match: D7FUJ4_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ4_ECTSI) HSP 1 Score: 54.7 bits (130), Expect = 4.600e-5 Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 1
Query: 19 VNVSAKKCRHPSCNKQPSYGAAGTRKAQFCVQHAENGMV 135
V+V K+C HP C K PSYG G++K +FCVQHA MV
Sbjct: 2 VSVQQKRCSHPECTKNPSYGKDGSKKVEFCVQHAHQDMV 40
BLAST of mRNA_E-fasciculatus_F_contig12067.1613.1 vs. uniprot
Match: A0A6H5L2L0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L0_9PHAE) HSP 1 Score: 57.8 bits (138), Expect = 5.820e-5 Identity = 37/113 (32.74%), Postives = 48/113 (42.48%), Query Frame = 1
Query: 40 CRHPSCNKQPSYG--AAGTRKAQFCVQHAENGMVDVRNVKRHDSFGFRIPASSLALPSPAGGDAGGDQAGGKLPSTKRCSFPQCRKRPTYGMEGSKIAEFCAPHAEPGMVNVS 372
CR CNK+PS+G G + C HAE GM+ R K+ + C FP C+ + YG GSK A+FCA HA+ GMVNV+
Sbjct: 319 CRRTGCNKRPSHGMNVDGIIEKVACAIHAEAGMI--RAYKK-----------------------------------RLCGFPSCQTQANYGANGSKKAQFCARHADDGMVNVT 394
BLAST of mRNA_E-fasciculatus_F_contig12067.1613.1 vs. uniprot
Match: D8LD34_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD34_ECTSI) HSP 1 Score: 56.6 bits (135), Expect = 7.410e-5 Identity = 24/38 (63.16%), Postives = 28/38 (73.68%), Query Frame = 1
Query: 19 VNVSAKKCRHPSCNKQPSYGAAGTRKAQFCVQHAENGM 132
VNV K C HP C K+PSYG +GT+KA+FC QHAE M
Sbjct: 2 VNVVTKPCGHPGCTKKPSYGKSGTKKAEFCSQHAEPDM 39
BLAST of mRNA_E-fasciculatus_F_contig12067.1613.1 vs. uniprot
Match: D8LMB1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMB1_ECTSI) HSP 1 Score: 52.8 bits (125), Expect = 8.060e-5 Identity = 20/38 (52.63%), Postives = 28/38 (73.68%), Query Frame = 1
Query: 19 VNVSAKKCRHPSCNKQPSYGAAGTRKAQFCVQHAENGM 132
V+V ++CRHP C K+PS+G G++K +FC QHA GM
Sbjct: 2 VDVVNRRCRHPGCTKRPSFGQDGSKKQEFCAQHAHQGM 39 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12067.1613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12067.1613.1 >prot_E-fasciculatus_F_contig12067.1613.1 ID=prot_E-fasciculatus_F_contig12067.1613.1|Name=mRNA_E-fasciculatus_F_contig12067.1613.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=664bp HSLENKVNVSAKKCRHPSCNKQPSYGAAGTRKAQFCVQHAENGMVDVRNVback to top mRNA from alignment at E-fasciculatus_F_contig12067:89..2080- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12067.1613.1 ID=mRNA_E-fasciculatus_F_contig12067.1613.1|Name=mRNA_E-fasciculatus_F_contig12067.1613.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1992bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12067:89..2080- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12067:89..2080- >mRNA_E-fasciculatus_F_contig12067.1613.1 ID=mRNA_E-fasciculatus_F_contig12067.1613.1|Name=mRNA_E-fasciculatus_F_contig12067.1613.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3984bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12067:89..2080- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |