mRNA_E-fasciculatus_F_contig12064.1611.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12064.1611.1
Unique NamemRNA_E-fasciculatus_F_contig12064.1611.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12064.1611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12064contigE-fasciculatus_F_contig12064:289..666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size378
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12064.1611.1prot_E-fasciculatus_F_contig12064.1611.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12064 301..603 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927715.05754-UTR-E-fasciculatus_F_contig12064:288..3001622927715.05754-UTR-E-fasciculatus_F_contig12064:288..300Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12064 289..300 +
1695995663.2671576-UTR-E-fasciculatus_F_contig12064:288..3001695995663.2671576-UTR-E-fasciculatus_F_contig12064:288..300Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12064 289..300 +
1622927715.0952063-UTR-E-fasciculatus_F_contig12064:603..6661622927715.0952063-UTR-E-fasciculatus_F_contig12064:603..666Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12064 604..666 +
1695995663.2940276-UTR-E-fasciculatus_F_contig12064:603..6661695995663.2940276-UTR-E-fasciculatus_F_contig12064:603..666Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12064 604..666 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927715.0769548-CDS-E-fasciculatus_F_contig12064:300..6031622927715.0769548-CDS-E-fasciculatus_F_contig12064:300..603Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12064 301..603 +
1695995663.2840679-CDS-E-fasciculatus_F_contig12064:300..6031695995663.2840679-CDS-E-fasciculatus_F_contig12064:300..603Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12064 301..603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12064.1611.1

>prot_E-fasciculatus_F_contig12064.1611.1 ID=prot_E-fasciculatus_F_contig12064.1611.1|Name=mRNA_E-fasciculatus_F_contig12064.1611.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=101bp
MWYFYASSLCKVVVFEARHEKRPWNKSAVCLLSKSDLLPAAQQSWVVRHV
VSVAMGPDERGWEENNKLTQLGVSGLIPGVPTEHASPAFLACWGSAGGWL
*
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mRNA from alignment at E-fasciculatus_F_contig12064:289..666+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12064.1611.1 ID=mRNA_E-fasciculatus_F_contig12064.1611.1|Name=mRNA_E-fasciculatus_F_contig12064.1611.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=378bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12064:289..666+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTATGTTGCCAGATGTGGTATTTTTATGCGAGCAGTCTTTGTAAGGTTGT
CGTTTTCGAAGCACGCCACGAGAAACGGCCATGGAACAAAAGCGCTGTGT
GTTTGCTGAGTAAAAGCGATTTGTTGCCTGCCGCACAGCAAAGTTGGGTT
GTTCGTCATGTGGTGTCTGTCGCGATGGGCCCCGACGAGCGGGGGTGGGA
AGAAAATAATAAATTAACACAATTGGGCGTGTCCGGTCTAATACCCGGCG
TGCCTACGGAGCACGCTTCGCCCGCCTTCCTTGCGTGTTGGGGATCCGCC
GGAGGTTGGTTGTGAAGCGGCGTGGCTAGATGACTTACAGCAGTAACGGC
AACGTACGTCTCGTTTTCTTTTTTATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12064:289..666+

>mRNA_E-fasciculatus_F_contig12064.1611.1 ID=mRNA_E-fasciculatus_F_contig12064.1611.1|Name=mRNA_E-fasciculatus_F_contig12064.1611.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12064:289..666+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGGTATTTTTATGCGAGCAGTCTTTGTAAGGTTGTCGTTTTCGAAGC
ACGCCACGAGAAACGGCCATGGAACAAAAGCGCTGTGTGTTTGCTGAGTA
AAAGCGATTTGTTGCCTGCCGCACAGCAAAGTTGGGTTGTTCGTCATGTG
GTGTCTGTCGCGATGGGCCCCGACGAGCGGGGGTGGGAAGAAAATAATAA
ATTAACACAATTGGGCGTGTCCGGTCTAATACCCGGCGTGCCTACGGAGC
ACGCTTCGCCCGCCTTCCTTGCGTGTTGGGGATCCGCCGGAGGTTGGTTG
TGAATGTGGTATTTTTATGCGAGCAGTCTTTGTAAGGTTGTCGTTTTCGA
AGCACGCCACGAGAAACGGCCATGGAACAAAAGCGCTGTGTGTTTGCTGA
GTAAAAGCGATTTGTTGCCTGCCGCACAGCAAAGTTGGGTTGTTCGTCAT
GTGGTGTCTGTCGCGATGGGCCCCGACGAGCGGGGGTGGGAAGAAAATAA
TAAATTAACACAATTGGGCGTGTCCGGTCTAATACCCGGCGTGCCTACGG
AGCACGCTTCGCCCGCCTTCCTTGCGTGTTGGGGATCCGCCGGAGGTTGG
TTGTGA
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