mRNA_E-fasciculatus_F_contig1206.1608.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1206.1608.1 vs. uniprot
Match: D8LQC0_ECTSI (DNA polymerase epsilon catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQC0_ECTSI) HSP 1 Score: 261 bits (666), Expect = 2.490e-78 Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1
Query: 13 QVFMISYMVDGQGYLIISREVVSEDVENFEYTPKPSFPGPFHIFNEPNEEAVIRRFFKHVAELRPQIIVTYNGDFFDWPFVDERAKGYGLDMEKEIGVGLQANGEYRGRCVAHMDAIYWVKR 378
QVFMISYMVDGQGYLIISREVVSEDVENFEYTPKPSFPGPFHIFNEPNEEAVIRRFFKHVAELRPQIIVTYNGDFFDWPFVDERAKGYGLDMEKEIGVGLQANGEYRGRCVAHMDAIYWVKR
Sbjct: 311 QVFMISYMVDGQGYLIISREVVSEDVENFEYTPKPSFPGPFHIFNEPNEEAVIRRFFKHVAELRPQIIVTYNGDFFDWPFVDERAKGYGLDMEKEIGVGLQANGEYRGRCVAHMDAIYWVKR 432
BLAST of mRNA_E-fasciculatus_F_contig1206.1608.1 vs. uniprot
Match: A0A6H5J9L3_9PHAE (DNA polymerase epsilon catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9L3_9PHAE) HSP 1 Score: 210 bits (534), Expect = 1.360e-66 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1
Query: 94 NFEYTPKPSFPGPFHIFNEPNEEAVIRRFFKHVAELRPQIIVTYNGDFFDWPFVDERAKGYGLDMEKEIGVGLQANGEYRGRCVAHMDAIYWVKR 378
NFEYTPKPSFPGPFHIFNEPNEEAVIRRFFKHVAELRPQIIVTYNGDFFDWPFVDERAKGYGLDMEKEIGVGLQANGEYRGRCVAHMDAIYWVKR
Sbjct: 2 NFEYTPKPSFPGPFHIFNEPNEEAVIRRFFKHVAELRPQIIVTYNGDFFDWPFVDERAKGYGLDMEKEIGVGLQANGEYRGRCVAHMDAIYWVKR 96
BLAST of mRNA_E-fasciculatus_F_contig1206.1608.1 vs. uniprot
Match: A0A7R9U2R1_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2R1_9STRA) HSP 1 Score: 181 bits (459), Expect = 1.180e-55 Identity = 78/122 (63.93%), Postives = 99/122 (81.15%), Query Frame = 1
Query: 13 QVFMISYMVDGQGYLIISREVVSEDVENFEYTPKPSFPGPFHIFNEPNEEAVIRRFFKHVAELRPQIIVTYNGDFFDWPFVDERAKGYGLDMEKEIGVGLQANGEYRGRCVAHMDAIYWVKR 378
QVFMISYM+DG+G+LI+SR VVS+D+E+FEYTPKPS+PG F +FNE +EE ++RRF H E RPQI VTYNGDFFDWPF+++RAK YG+D+ E+G+ LQ E+RGRC H+DA WV R
Sbjct: 61 QVFMISYMIDGEGFLIVSRSVVSKDIEDFEYTPKPSYPGVFTVFNEASEEGLLRRFLDHCREARPQIYVTYNGDFFDWPFIEQRAKVYGMDIRSELGIELQRE-EFRGRCAVHLDAFAWVNR 181
BLAST of mRNA_E-fasciculatus_F_contig1206.1608.1 vs. uniprot
Match: A0A2R5GVQ4_9STRA (DNA-directed DNA polymerase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GVQ4_9STRA) HSP 1 Score: 190 bits (483), Expect = 1.250e-53 Identity = 82/123 (66.67%), Postives = 101/123 (82.11%), Query Frame = 1
Query: 13 QVFMISYMVDGQGYLIISREVVSEDVENFEYTPKPSFPGPFHIFNEPNEEAVIRRFFKHVAELRPQIIVTYNGDFFDWPFVDERAKGYGLDMEKEIGVGLQANG-EYRGRCVAHMDAIYWVKR 378
QVFMISYM DGQGYLII+REVV+ED+E+FEYTPKP +PGPF +FNE +EE+ +R+FF+H ELRP + VTYNGDFFDWPF+++RA Y +D+ E+GVG G EYRGRC HMD +YWVKR
Sbjct: 297 QVFMISYMFDGQGYLIINREVVTEDIEDFEYTPKPEYPGPFEVFNEADEESTLRKFFEHCRELRPNVWVTYNGDFFDWPFIEKRAATYDMDLRTEVGVGPNKEGTEYRGRCSVHMDCLYWVKR 419
BLAST of mRNA_E-fasciculatus_F_contig1206.1608.1 vs. uniprot
Match: A0A7S2UHD4_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UHD4_9STRA) HSP 1 Score: 182 bits (461), Expect = 1.470e-53 Identity = 81/134 (60.45%), Postives = 103/134 (76.87%), Query Frame = 1
Query: 1 SSLAQVFMISYMVDGQGYLIISREVVSEDVENFEYTPKPSFPGPFHIFNEPNEEAVIRRFFKHVAELRPQIIVTYNGDFFDWPFVDERAKGYGLDMEKEIGVGL--------QANGEYRGRCVAHMDAIYWVKR 378
+++ ++MISYMVDGQG+LI+SR+VV +DV +FEYTPKPS+PGPFHIFNE EE +IRRFF LRPQI+VTYNGDFFDWPF+++RA YGLD+ KE+G+ GEYRGRC H+DA +WV+R
Sbjct: 81 ANVDSIYMISYMVDGQGFLILSRDVVGQDVMDFEYTPKPSYPGPFHIFNELTEEDLIRRFFSEYQRLRPQIVVTYNGDFFDWPFLEQRAAMYGLDIGKELGIERVGGNGKENSGGGEYRGRCCVHLDAFHWVQR 214
BLAST of mRNA_E-fasciculatus_F_contig1206.1608.1 vs. uniprot
Match: A0A7S2SRI6_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SRI6_9STRA) HSP 1 Score: 176 bits (447), Expect = 9.170e-52 Identity = 78/122 (63.93%), Postives = 93/122 (76.23%), Query Frame = 1
Query: 13 QVFMISYMVDGQGYLIISREVVSEDVENFEYTPKPSFPGPFHIFNEPNEEAVIRRFFKHVAELRPQIIVTYNGDFFDWPFVDERAKGYGLDMEKEIGVGLQANGEYRGRCVAHMDAIYWVKR 378
QVFMISY+ DGQGYLII+RE VS D+ +FEYTPKP +PGPF +FNE +E A + RFF H ELRP I VTYNGDFFDWPFV+ RAK YG++M EIGV ++G Y G C HMD +WV+R
Sbjct: 123 QVFMISYVFDGQGYLIINREHVSADISDFEYTPKPEYPGPFEVFNEADERATLERFFTHCKELRPNIWVTYNGDFFDWPFVETRAKVYGMNMHTEIGVRETSSGVYTGSCAVHMDCFHWVQR 244
BLAST of mRNA_E-fasciculatus_F_contig1206.1608.1 vs. uniprot
Match: W7TVX1_9STRA (DNA-directed DNA polymerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVX1_9STRA) HSP 1 Score: 184 bits (467), Expect = 1.790e-51 Identity = 79/126 (62.70%), Postives = 104/126 (82.54%), Query Frame = 1
Query: 1 SSLAQVFMISYMVDGQGYLIISREVVSEDVENFEYTPKPSFPGPFHIFNEPNEEAVIRRFFKHVAELRPQIIVTYNGDFFDWPFVDERAKGYGLDMEKEIGVGLQANGEYRGRCVAHMDAIYWVKR 378
+++ Q+FMISYMVDGQGYL+I+REVV ED+++FEYTPKP++ GPF + N P+EEAV+R F +HV ELRPQI VTYNGD+FDWPF++ R + YG++M EIGV ++ GEYRGR H+DA +WVKR
Sbjct: 301 ANVDQIFMISYMVDGQGYLLINREVVGEDIQDFEYTPKPAYAGPFTVVNVPDEEAVLREFIRHVQELRPQIFVTYNGDYFDWPFMETRMEAYGIEMSAEIGVA-ESQGEYRGRAAVHLDAFHWVKR 425
BLAST of mRNA_E-fasciculatus_F_contig1206.1608.1 vs. uniprot
Match: A0A067CV87_SAPPC (DNA polymerase epsilon catalytic subunit n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CV87_SAPPC) HSP 1 Score: 183 bits (464), Expect = 4.510e-51 Identity = 79/122 (64.75%), Postives = 95/122 (77.87%), Query Frame = 1
Query: 13 QVFMISYMVDGQGYLIISREVVSEDVENFEYTPKPSFPGPFHIFNEPNEEAVIRRFFKHVAELRPQIIVTYNGDFFDWPFVDERAKGYGLDMEKEIGVGLQANGEYRGRCVAHMDAIYWVKR 378
Q++MISYMVD QGYLI++RE VS+DV++FEYTP + GPF FN PNEEA+++RFF HV EL P I VTYNGDFFDWPFV+ RA +GL+M EIG+ NGEYRG+C HMDA WVKR
Sbjct: 274 QIYMISYMVDRQGYLIVNREFVSQDVDDFEYTPTKEYDGPFECFNAPNEEALLKRFFSHVTELNPHIFVTYNGDFFDWPFVETRAAAHGLNMAAEIGISCDRNGEYRGKCAVHMDAYCWVKR 395
BLAST of mRNA_E-fasciculatus_F_contig1206.1608.1 vs. uniprot
Match: A0A3M6VP32_9STRA (DNA polymerase epsilon catalytic subunit n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VP32_9STRA) HSP 1 Score: 181 bits (460), Expect = 1.570e-50 Identity = 78/123 (63.41%), Postives = 102/123 (82.93%), Query Frame = 1
Query: 13 QVFMISYMVDGQGYLIISREVVSEDVENFEYTPKPSFPGPFHIFNEPNEEAVIRRFFKHVAELRPQIIVTYNGDFFDWPFVDERAKGYGLDMEKEIGVGL-QANGEYRGRCVAHMDAIYWVKR 378
Q++MISYM+D QGYLI++R+ VSED+++FEYTPK ++PGPF +FNE NEE +++RFF+HV E +P I VTYNGDFFDWPF++ RA+ YG++M +EIGV L + GEYRGRC HMDA WVKR
Sbjct: 335 QIYMISYMIDKQGYLIVNRDFVSEDIQDFEYTPKVAYPGPFIVFNEENEEKLLKRFFEHVIEEQPHIFVTYNGDFFDWPFIETRAQVYGINMAREIGVSLDERTGEYRGRCSVHMDAFCWVKR 457
BLAST of mRNA_E-fasciculatus_F_contig1206.1608.1 vs. uniprot
Match: A0A7S2FZE0_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FZE0_9STRA) HSP 1 Score: 168 bits (426), Expect = 2.330e-50 Identity = 72/114 (63.16%), Postives = 90/114 (78.95%), Query Frame = 1
Query: 37 VDGQGYLIISREVVSEDVENFEYTPKPSFPGPFHIFNEPNEEAVIRRFFKHVAELRPQIIVTYNGDFFDWPFVDERAKGYGLDMEKEIGVGLQANGEYRGRCVAHMDAIYWVKR 378
V+GQGYLII R +VS+D+++FEYTPKPSFPGPF IFNE NEE ++R+F H+ ELRPQI VTYNGDFFDWPF+++R + YG++M KEIG+ YRGRC AH+D WV R
Sbjct: 1 VNGQGYLIIHRGIVSKDIDDFEYTPKPSFPGPFKIFNEANEEQLLRKFLSHIQELRPQIFVTYNGDFFDWPFLEKRLQKYGINMGKEIGIYKNREDVYRGRCSAHLDCFAWVNR 114 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1206.1608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1206.1608.1 >prot_E-fasciculatus_F_contig1206.1608.1 ID=prot_E-fasciculatus_F_contig1206.1608.1|Name=mRNA_E-fasciculatus_F_contig1206.1608.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=120bp MISYMVDGQGYLIISREVVSEDVENFEYTPKPSFPGPFHIFNEPNEEAVIback to top mRNA from alignment at E-fasciculatus_F_contig1206:16739..18231- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1206.1608.1 ID=mRNA_E-fasciculatus_F_contig1206.1608.1|Name=mRNA_E-fasciculatus_F_contig1206.1608.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1493bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1206:16739..18231- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1206:16739..18231- >mRNA_E-fasciculatus_F_contig1206.1608.1 ID=mRNA_E-fasciculatus_F_contig1206.1608.1|Name=mRNA_E-fasciculatus_F_contig1206.1608.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=720bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1206:16739..18231- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |