mRNA_E-fasciculatus_F_contig12057.1604.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12057.1604.1
Unique NamemRNA_E-fasciculatus_F_contig12057.1604.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12057.1604.1 vs. uniprot
Match: D7G943_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G943_ECTSI)

HSP 1 Score: 232 bits (592), Expect = 2.950e-72
Identity = 176/199 (88.44%), Postives = 182/199 (91.46%), Query Frame = 1 
Query:    1 QETRYGKSSIDGGGGGIGGGINFIGADGSVLDNLPSGMEAVMDPDAICSLDYSLASLTSLSPPPGEGHGQQDGGGSWQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPKRARAEAGRASSERIASSGPNNRHNGGSRDRDEDTNGRGGGLEAGETNGRGAAGYGHRSMTAKARGGKKRRKGGDDAGD 597
            QETR GKSSIDGGGG IGGGINFIGADG+VLD LPSGMEAVMDPDAICSLDYSLASLTSLSPPPGEG GQQDGGGSWQP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    GPK+ARAEAGRASSE+IASSGPN RHN GSRDRD+DT GR GG+EAGET+GRGAA YGH SM AKARGGKKRRK GDDAGD
Sbjct:    5 QETRCGKSSIDGGGG-IGGGINFIGADGAVLDKLPSGMEAVMDPDAICSLDYSLASLTSLSPPPGEGQGQQDGGGSWQPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----GPKQARAEAGRASSEKIASSGPN-RHNRGSRDRDDDTTGRSGGVEAGETSGRGAAEYGHPSMAAKARGGKKRRKRGDDAGD 197
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12057.1604.1 vs. uniprot
Match: A0A6H5KUH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH5_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 3.230e-61
Identity = 167/199 (83.92%), Postives = 171/199 (85.93%), Query Frame = 1 
Query:    1 QETRYGKSSIDGGGGGIGGGINFIGADGSVLDNLPSGMEAVMDPDAICSLDYSLASLTSLSPPPGEGHGQQDGGGSWQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPKRARAEAGRASSERIASSGPNNRHNGGSRDRDEDTNGRGGGLEAGETNGRGAAGYGHRSMTAKARGGKKRRKGGDDAGD 597
            QETRYGKSSIDGGGG IGGGI+FIGADGSVLD LPSGMEAVMDPDAICSLDYSLASLTSLSPP GEG  QQDGGGSWQP      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       EAGRASSERIASSGPN RHN  SRDRD+DT GR GG+EAGET+GRGAAG GH SM AKARGGKKRRK  DDAGD
Sbjct:    5 QETRYGKSSIDGGGG-IGGGISFIGADGSVLDKLPSGMEAVMDPDAICSLDYSLASLTSLSPPLGEGQYQQDGGGSWQPRSSTADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXEAGRASSERIASSGPN-RHNRESRDRDDDTTGRSGGVEAGETSGRGAAGCGHHSMAAKARGGKKRRKRADDAGD 199
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12057.1604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G943_ECTSI2.950e-7288.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUH5_9PHAE3.230e-6183.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12057contigE-fasciculatus_F_contig12057:3544..4161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionBasic leucine zipper domain protein
Ec32 orthologEc-00_011190.1
Hectar predicted targeting categoryother localisation
Exons1
Model size620
Cds size618
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927714.3262186-CDS-E-fasciculatus_F_contig12057:3543..41611622927714.3262186-CDS-E-fasciculatus_F_contig12057:3543..4161Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12057 3544..4161 +
1695995662.9300485-CDS-E-fasciculatus_F_contig12057:3543..41611695995662.9300485-CDS-E-fasciculatus_F_contig12057:3543..4161Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12057 3544..4161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12057.1604.1prot_E-fasciculatus_F_contig12057.1604.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12057 3544..4161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12057.1604.1

>prot_E-fasciculatus_F_contig12057.1604.1 ID=prot_E-fasciculatus_F_contig12057.1604.1|Name=mRNA_E-fasciculatus_F_contig12057.1604.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=206bp
QETRYGKSSIDGGGGGIGGGINFIGADGSVLDNLPSGMEAVMDPDAICSL
DYSLASLTSLSPPPGEGHGQQDGGGSWQPRSSTADDGPPPPTATATAGTT
VAAVARTTTAAAAAAAAAGPKRARAEAGRASSERIASSGPNNRHNGGSRD
RDEDTNGRGGGLEAGETNGRGAAGYGHRSMTAKARGGKKRRKGGDDAGDG
DGDGDR
back to top

mRNA from alignment at E-fasciculatus_F_contig12057:3544..4161+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12057.1604.1 ID=mRNA_E-fasciculatus_F_contig12057.1604.1|Name=mRNA_E-fasciculatus_F_contig12057.1604.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=618bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12057:3544..4161+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGAAACTCGCTACGGTAAAAGCAGCATCGATGGTGGCGGCGGTGGTAT
CGGCGGCGGGATCAACTTCATCGGGGCGGACGGGTCTGTGCTCGACAACC
TGCCCTCGGGAATGGAGGCGGTTATGGACCCCGACGCGATCTGCTCTCTC
GACTACAGCCTGGCTAGCCTGACGAGCCTGTCCCCCCCGCCGGGCGAGGG
CCACGGGCAGCAGGACGGGGGGGGCTCTTGGCAACCGCGGTCGTCGACTG
CGGACGATGGGCCGCCGCCACCGACTGCTACCGCTACCGCTGGGACAACC
GTCGCTGCTGTTGCGAGAACGACAACAGCAGCAGCAGCAGCAGCAGCAGC
AGCGGGGCCGAAGCGGGCGAGGGCAGAGGCGGGAAGAGCGTCGAGTGAAC
GAATAGCGTCGTCCGGGCCGAACAACCGCCACAATGGAGGGTCTCGAGAT
CGCGACGAGGACACCAACGGTAGAGGCGGTGGCTTGGAAGCGGGCGAAAC
CAACGGGAGAGGTGCCGCCGGGTACGGCCATCGCTCGATGACTGCAAAGG
CGCGGGGGGGCAAGAAGAGAAGAAAGGGGGGCGATGATGCGGGCGACGGG
GACGGGGATGGCGACCGC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12057:3544..4161+

>mRNA_E-fasciculatus_F_contig12057.1604.1 ID=mRNA_E-fasciculatus_F_contig12057.1604.1|Name=mRNA_E-fasciculatus_F_contig12057.1604.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1236bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12057:3544..4161+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGAAACTCGCTACGGTAAAAGCAGCATCGATGGTGGCGGCGGTGGTAT
CGGCGGCGGGATCAACTTCATCGGGGCGGACGGGTCTGTGCTCGACAACC
TGCCCTCGGGAATGGAGGCGGTTATGGACCCCGACGCGATCTGCTCTCTC
GACTACAGCCTGGCTAGCCTGACGAGCCTGTCCCCCCCGCCGGGCGAGGG
CCACGGGCAGCAGGACGGGGGGGGCTCTTGGCAACCGCGGTCGTCGACTG
CGGACGATGGGCCGCCGCCACCGACTGCTACCGCTACCGCTGGGACAACC
GTCGCTGCTGTTGCGAGAACGACAACAGCAGCAGCAGCAGCAGCAGCAGC
AGCGGGGCCGAAGCGGGCGAGGGCAGAGGCGGGAAGAGCGTCGAGTGAAC
GAATAGCGTCGTCCGGGCCGAACAACCGCCACAATGGAGGGTCTCGAGAT
CGCGACGAGGACACCAACGGTAGAGGCGGTGGCTTGGAAGCGGGCGAAAC
CAACGGGAGAGGTGCCGCCGGGTACGGCCATCGCTCGATGACTGCAAAGG
CGCGGGGGGGCAAGAAGAGAAGAAAGGGGGGCGATGATGCGGGCGACGGG
GACGGGGATGGCGACCGCCAGGAAACTCGCTACGGTAAAAGCAGCATCGA
TGGTGGCGGCGGTGGTATCGGCGGCGGGATCAACTTCATCGGGGCGGACG
GGTCTGTGCTCGACAACCTGCCCTCGGGAATGGAGGCGGTTATGGACCCC
GACGCGATCTGCTCTCTCGACTACAGCCTGGCTAGCCTGACGAGCCTGTC
CCCCCCGCCGGGCGAGGGCCACGGGCAGCAGGACGGGGGGGGCTCTTGGC
AACCGCGGTCGTCGACTGCGGACGATGGGCCGCCGCCACCGACTGCTACC
GCTACCGCTGGGACAACCGTCGCTGCTGTTGCGAGAACGACAACAGCAGC
AGCAGCAGCAGCAGCAGCAGCGGGGCCGAAGCGGGCGAGGGCAGAGGCGG
GAAGAGCGTCGAGTGAACGAATAGCGTCGTCCGGGCCGAACAACCGCCAC
AATGGAGGGTCTCGAGATCGCGACGAGGACACCAACGGTAGAGGCGGTGG
CTTGGAAGCGGGCGAAACCAACGGGAGAGGTGCCGCCGGGTACGGCCATC
GCTCGATGACTGCAAAGGCGCGGGGGGGCAAGAAGAGAAGAAAGGGGGGC
GATGATGCGGGCGACGGGGACGGGGATGGCGACCGC
back to top