mRNA_E-fasciculatus_F_contig12051.1601.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12051.1601.1
Unique NamemRNA_E-fasciculatus_F_contig12051.1601.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12051.1601.1 vs. uniprot
Match: D7FK33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK33_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 6.970e-42
Identity = 89/166 (53.61%), Postives = 109/166 (65.66%), Query Frame = 1 
Query:    1 QIRHESWEGGRTFRGKHVVLLASAEDTIFDGDGHQASCKLTRAVFAAARHTTNAHFVLVANGFELEPTMRETLESMLDDGGWRSFTVIEMPEFRGFSSAVNLAMKAAPGNSIVAILSMSALLLPARTRDSSGPIFMDTE----SVNSDARNEGAAIDIFVAYERLK 486
            Q+RH SW  GRT R K VVLLA A+D   D        +L +AV AA+RHTTNA  VLVA+GFEL+   RET+  +L +GGW+SFT IE+ EF GFSSA+N AMK A GNS+VA+L  S LLLP      S P  ++ +    SVN+D    G A DIFVAYERL+
Sbjct:  114 QVRHVSWAAGRTLRRKLVVLLAFAQDARSD--------RLAKAVLAASRHTTNADLVLVADGFELDMATRETVRGVLANGGWKSFTAIEVTEFEGFSSAINRAMKTASGNSVVAVLPTSFLLLPTTANGPSAPPTLNRKNNRGSVNNDIGGGGIASDIFVAYERLR 271
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12051.1601.1 vs. uniprot
Match: A0A6H5JEH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEH3_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.710e-34
Identity = 85/165 (51.52%), Postives = 100/165 (60.61%), Query Frame = 1 
Query:    1 QIRHESWEGGRTFRGKHVVLLASAEDTIFDGDGHQASCKLTRAVFAAARHTTNAHFVLVANGFELEPTMRETLESMLDDGGWRSFTVIEMPEFRGFSSAVNLAMKAAPGNSIVAILSMSALLLPARTRDSSGPIFMDTE---SVNSDARNEGAAIDIFVAYERLK 486
            Q+RH SWE GRT RGK++VLLA AED    G+      +LTRAV AA+ HTT AHF+LVA+GFEL+ T RE           R+F              VN AMK  PGNS+VAILS S LLLP  + D+  P   D E    V+SDA  EGAA D+FVAYERLK
Sbjct:   17 QVRHVSWESGRTLRGKYLVLLAFAEDAPDVGNEGAHPSRLTRAVLAASMHTTEAHFLLVADGFELDATTREATV--------RTF------------HTVNRAMKIVPGNSVVAILSTSTLLLPTSSVDTCIPTTKDAECFDDVDSDAGREGAASDVFVAYERLK 161
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12051.1601.1 vs. uniprot
Match: A0A6H5JSA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA5_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.550e-20
Identity = 57/77 (74.03%), Postives = 60/77 (77.92%), Query Frame = 1 
Query:  292 SAVNLAMKAAPGNSIVAILSMSALLLPARTRDSSGPIFMDTESVNSD----ARNEGAAIDIFVAYERLKDSSPVFPS 510
            +AVNLAMK  P NSIVAIL  SALLL  RT DSSGPI  DTE  +SD    AR+EGAAIDIFVAYERLK SSPVFPS
Sbjct:   25 AAVNLAMKTVPSNSIVAILPTSALLLLVRTLDSSGPISTDTEHGHSDVDSAARSEGAAIDIFVAYERLKSSSPVFPS 101
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12051.1601.1 vs. uniprot
Match: A0A6H5JRN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRN8_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 4.260e-16
Identity = 65/162 (40.12%), Postives = 80/162 (49.38%), Query Frame = 1 
Query:    1 QIRHESWEGGRTFRGKHVVLLASAEDTIFDGDGHQASCKLTRAVFAAARHTTNAHFVLVANGFELEPTMRETLESMLDDGGWRSFTVIEMPEFRGFSSAVNLAMKAAPGNSIVAILSMSALLLPARTRDSSGPIFMDTESVNSDARNEGAAIDIFVAYERLK 486
            Q+RH SW  GRT R K VVLLA AED   DG        LT+AV AA+RHT+NA FVLVA+GFEL+   RET+ +       RS   +        S++  L    A G S    L+   +                  SVN+D      A DIFVAYERL+
Sbjct:  108 QVRHVSWAAGRTLRRKLVVLLAFAEDARSDG--------LTKAVLAASRHTSNADFVLVADGFELDMATRETVTA-----SGRSVVAV-------LSTSFLLLPTTANGPSAPPTLNREYI----------------RGSVNNDIGGGRIASDIFVAYERLR 233
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12051.1601.1 vs. uniprot
Match: D7FK27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK27_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 2.590e-15
Identity = 42/81 (51.85%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:    1 QIRHESWEGGRTFRGKHVVLLASAEDTIFDGDGHQASCKLTRAVFAAARHTTNAHFVLVANGFELEPTMRETLESMLDDGG 243
            Q+RH SWE GRT  GK++VLLA AED +  G+      +LTRAV AA+ HT  AHF+LVA+GFEL+   RE        GG
Sbjct:  103 QVRHVSWESGRTLLGKYLVLLAFAEDALDVGNEGAHPSRLTRAVLAASTHTAEAHFLLVADGFELDAMTREATILRQGKGG 183
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12051.1601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FK33_ECTSI6.970e-4253.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEH3_9PHAE1.710e-3451.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSA5_9PHAE1.550e-2074.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRN8_9PHAE4.260e-1640.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK27_ECTSI2.590e-1551.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12051contigE-fasciculatus_F_contig12051:1423..4164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.4
Seed ortholog evalue3.7e-37
Seed eggNOG ortholog2880.D7FK33
EggNOG OGs2EN0C@1,2SRIN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size511
Cds size510
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12051.1601.1prot_E-fasciculatus_F_contig12051.1601.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12051 1423..4163 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927714.006722-CDS-E-fasciculatus_F_contig12051:1422..14971622927714.006722-CDS-E-fasciculatus_F_contig12051:1422..1497Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12051 1423..1497 +
1695995662.7619748-CDS-E-fasciculatus_F_contig12051:1422..14971695995662.7619748-CDS-E-fasciculatus_F_contig12051:1422..1497Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12051 1423..1497 +
1622927714.0294774-CDS-E-fasciculatus_F_contig12051:1964..21081622927714.0294774-CDS-E-fasciculatus_F_contig12051:1964..2108Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12051 1965..2108 +
1695995662.772785-CDS-E-fasciculatus_F_contig12051:1964..21081695995662.772785-CDS-E-fasciculatus_F_contig12051:1964..2108Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12051 1965..2108 +
1622927714.0452657-CDS-E-fasciculatus_F_contig12051:3450..35261622927714.0452657-CDS-E-fasciculatus_F_contig12051:3450..3526Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12051 3451..3526 +
1695995662.7817326-CDS-E-fasciculatus_F_contig12051:3450..35261695995662.7817326-CDS-E-fasciculatus_F_contig12051:3450..3526Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12051 3451..3526 +
1622927714.0562267-CDS-E-fasciculatus_F_contig12051:3948..41631622927714.0562267-CDS-E-fasciculatus_F_contig12051:3948..4163Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12051 3949..4163 +
1695995662.7954822-CDS-E-fasciculatus_F_contig12051:3948..41631695995662.7954822-CDS-E-fasciculatus_F_contig12051:3948..4163Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12051 3949..4163 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12051.1601.1

>prot_E-fasciculatus_F_contig12051.1601.1 ID=prot_E-fasciculatus_F_contig12051.1601.1|Name=mRNA_E-fasciculatus_F_contig12051.1601.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=170bp
QIRHESWEGGRTFRGKHVVLLASAEDTIFDGDGHQASCKLTRAVFAAARH
TTNAHFVLVANGFELEPTMRETLESMLDDGGWRSFTVIEMPEFRGFSSAV
NLAMKAAPGNSIVAILSMSALLLPARTRDSSGPIFMDTESVNSDARNEGA
AIDIFVAYERLKDSSPVFPS
back to top

mRNA from alignment at E-fasciculatus_F_contig12051:1423..4164+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12051.1601.1 ID=mRNA_E-fasciculatus_F_contig12051.1601.1|Name=mRNA_E-fasciculatus_F_contig12051.1601.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2742bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12051:1423..4164+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAAATACGCCATGAGTCGTGGGAGGGTGGACGAACGTTCCGAGGCAAGCA
TGTGGTGCTCCTCGCTTCTGCAGAGGTGGGTACACGAAAATTCGAAAATT
CCGGTATAGTTCACAACAATGTCAGGACACAAATCCCGCCAGCCGAAATC
TTGCCACCAGACCACCGGTGGGCGTGTTTTCGTATTACCCTCGGGGACTT
TCAGCACACTGAACTGTGTCCACCGACATGTGCTGCGTTGCCCGTTTGTG
CCTGTTCCTCTGCAGGATGTGCACAAAAAGACCGATTCTTCTCAACAGGG
ACAAAAGTGTAGAACAGGACGTCTGTTCCTCACAATACCTGCCTTCCGGG
CTTTGTCCCTTGTCTAGTTTTCACATGTACGTATCTGTATACAACCTACC
TCATAATTTCACCCTTCAGCGCAATGCTCTGGTTCACTCTCTTGCAACAT
CGTCTGCGTTTATCTTAGAGCTCGGTACTACACTGCTGTGCCATGTGACG
AATACCGACTTCGGCCCTCCTCCCTCGCTTTGGTCCATCCAGGATACAAT
TTTTGATGGCGATGGGCATCAGGCTTCGTGCAAGTTGACGAGGGCGGTGT
TTGCGGCGGCCAGGCACACCACGAACGCTCATTTCGTTCTTGTTGCAAAT
GGATTCGAACTGGAACCGACTATGAGAGAAACCCTGGTGAGACTCTGTTG
TTGATGGGTGATGGCCAAGAACTCCGAATTTCCAACACGGACTTCCCGTA
TATATTTTCTTTGCTTTTCGACGGTTAAACACGAATAAACCTGAATCTCG
AGTACACCGGCGAAGATCAAGTTGCGTACAGGTGTTGATCGATAATGGAA
AGACATTTTGTATCATCTTCCCAAGTGCGTGCGTATTCTGACAAAACTCG
TCCTTTGCCGCTTGGTAGATTTTTGACGACCAATGTTCCGACCGAAAGAA
TCGAGCTGAACGAAACGGGGAGGTGGTACGAACTCTAGCAGCAGAGAAAA
AAATTATGGATACGCCCATCTCGTGCTGATGTGCCCAAGGCACGATAGAC
ATCTCCCTTCCAGAATGGTGTAAATGGTTCTTCTGTTGTTTGCCTTTCAT
CGTTGCGGGATTTCGTCCTGTCCTCTGTTGCGCTTTGGAGTTCGTCAGAA
ACTTTGCCATACCAGTCGTGCGGCCACTGCGAACTACGCCACCCAAGGCG
CGTTCGGCAATAACGTAGGGCGACGACCACAAGGCAAAGGGGACCTATTT
ATCAGAAAAATGGCAACTAAACAACGTGCACACACTCTCTGCATATAATC
TCCATACTGTAGTTGCCAGTAACCACGGCCAGCTAACGCAACCCTTTCAA
ACTGGTCGGGGATACCGGCACGGGGGGGCAGAGCTACGCTTCTCGATGGT
AAAGCTGATGTGTGCTGGAACACCGTGGTAGACCCACGTGGGTTGGCAAG
CACGCAGCAAACGCAATAGATGCGTACGTAAAGATCGTCCTTGTTCGATT
GTCGTGTCTTTTTCTCTTGCCGGACTTGATATTTTGTTGAGCGTACCTGC
AGGAGAGTGGCAATTTCAAGACTGAAATAGTTGTTATTCCGTATGCATCA
TCCACTCATCTGGCAACTTTCTTCATTTGGTGGGCATGGTCGATGTTGAA
ATGGTCCCAACCCTATGGTGCTGCGGAGTTGCAAAAAAAGAAACGAAAGT
CGAATCGAGCATGGTTCAGGGTCATAATTTGTATCTGACGTGTATGTTGG
ATGTAAGAGTCTTGGTGAGAACACCTACAGTACCTCACACACTTCGTGTA
GGTGTTCGATAGGGGGTTTTCCTGCGTGCGTGCATGCTGGTATAACTCTA
CCTGAACGCTTAAAACGGACTACCGGTATGTGAAATATATGGCATGTTCA
GGTTTTCGGTGATTTGGTGAGTGTTCACATGCGTTGTTGCACGAGCATAT
TCATACGATATGAAGAGCCCTGAGAAAACGATTTTTGCTTGGCACCGTCA
ACCACGTTTGATCGTATGGGTACTGCAGGAGAGCATGCTTGATGACGGGG
GGTGGAGAAGTTTCACCGTTATCGAGATGCCAGAATTTCGAGGATTCTCT
TCAGGTAAGTCGGCAAATTAGTCCGTCTTTCTCACCTCTCCCGTAGTTGG
CCCCGTACGTTGCACAGCATCCTTGAACTATGAAAGAAGCACGAAATATT
TTGGGTAGGCCAAGGTGCTATATCAGTGCGAGATCGGCGCAGACCGTGTT
GGTGTAAAAAACACGCAGCTCGCTGAATGTTTTGACGACATGAGTCGCCA
CCAAACATGTTGCTGATACAAAGAAGCGCACAACATGAGAGCACCCAAAG
CCGCCTCCTCTGAAGTCGCCAAAACCCTCGTGCTTGGCCCTTCAACGAGT
AGATATAGCAGGTGGACCATAGGCGTTTGGCTTCCGCAAACCGACTTATC
CAACCGCTGGGTCTTCGCGTGTGTTTCGGGTTTCCACATGCCATGGGTGT
TGCTGCCTTGGCACTTGCACGCGCAGCCGTCAACCTAGCCATGAAGGCAG
CACCGGGCAACTCTATCGTGGCCATCCTGTCCATGTCAGCGCTGCTGCTC
CCCGCCAGAACCCGCGATTCGTCAGGGCCAATATTTATGGACACAGAAAG
TGTAAACAGTGATGCCAGGAACGAGGGAGCAGCGATCGATATCTTTGTTG
CTTACGAGCGCCTCAAGGACAGTTCTCCTGTATTTCCTTCTC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12051:1423..4164+

>mRNA_E-fasciculatus_F_contig12051.1601.1 ID=mRNA_E-fasciculatus_F_contig12051.1601.1|Name=mRNA_E-fasciculatus_F_contig12051.1601.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1020bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12051:1423..4164+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAAATACGCCATGAGTCGTGGGAGGGTGGACGAACGTTCCGAGGCAAGCA
TGTGGTGCTCCTCGCTTCTGCAGAGCAAATACGCCATGAGTCGTGGGAGG
GTGGACGAACGTTCCGAGGCAAGCATGTGGTGCTCCTCGCTTCTGCAGAG
GATACAATTTTTGATGGCGATGGGCATCAGGCTTCGTGCAAGTTGACGAG
GGCGGTGTTTGCGGCGGCCAGGCACACCACGAACGCTCATTTCGTTCTTG
TTGCAAATGGATTCGAACTGGAACCGACTATGAGAGAAACCCTGGATACA
ATTTTTGATGGCGATGGGCATCAGGCTTCGTGCAAGTTGACGAGGGCGGT
GTTTGCGGCGGCCAGGCACACCACGAACGCTCATTTCGTTCTTGTTGCAA
ATGGATTCGAACTGGAACCGACTATGAGAGAAACCCTGGAGAGCATGCTT
GATGACGGGGGGTGGAGAAGTTTCACCGTTATCGAGATGCCAGAATTTCG
AGGATTCTCTTCAGGAGAGCATGCTTGATGACGGGGGGTGGAGAAGTTTC
ACCGTTATCGAGATGCCAGAATTTCGAGGATTCTCTTCAGCCGTCAACCT
AGCCATGAAGGCAGCACCGGGCAACTCTATCGTGGCCATCCTGTCCATGT
CAGCGCTGCTGCTCCCCGCCAGAACCCGCGATTCGTCAGGGCCAATATTT
ATGGACACAGAAAGTGTAAACAGTGATGCCAGGAACGAGGGAGCAGCGAT
CGATATCTTTGTTGCTTACGAGCGCCTCAAGGACAGTTCTCCTGTATTTC
CTTCTCCGTCAACCTAGCCATGAAGGCAGCACCGGGCAACTCTATCGTGG
CCATCCTGTCCATGTCAGCGCTGCTGCTCCCCGCCAGAACCCGCGATTCG
TCAGGGCCAATATTTATGGACACAGAAAGTGTAAACAGTGATGCCAGGAA
CGAGGGAGCAGCGATCGATATCTTTGTTGCTTACGAGCGCCTCAAGGACA
GTTCTCCTGTATTTCCTTCT
back to top