|
|
Homology
BLAST of mRNA_E-fasciculatus_F_contig12049.1597.1 vs. uniprot
Match: D7G3K8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3K8_ECTSI) HSP 1 Score: 784 bits (2024), Expect = 1.360e-275 Identity = 530/645 (82.17%), Postives = 548/645 (84.96%), Query Frame = 1
Query: 16 QKVDSMRQALGSVADSRSPAMGPVDAAQNDEEXXXXXXXXXXXXXXXXXXXXNG--KRKQQRPHQAREEVFALSNTEDNESLQGLVRSRGSLWIGKFDLPSPPAGEDESELVDLWPRKVARFVEDDGRGAFPLEGKPNTFGSLAAPKEGSVSRGGAVECARRAHGLIAQALGELRPHVPXXXXXXXXXXVVNPASSSPSXXXSLKPVRGGKAGGSAFGSGGGVYSASPKAAAAASPGKVKPVPMSAGDSEEEDSEGEMMSGVAAGRSSEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQLRGREASNGVEDMDDXXXXXXXXGGAESRGDNAGGPAGAGEMTVAAVRESLLSNPSEHEQPDPSPQEWEVAVKKFISHVESLPPGTEQEELSLMFAAALDPTLVRLRMANTKLIGLAEACLSQGE-EDPEDDGEDSDSPNGGGGDRKGGAKKNGFKVRLELEAPEEGAPPPDGIAGVLRAVAAAASAVEAAARAEACVICGGDTLGGLGEIKRDYKRCLPPGPREPLQFIIAEEEARVQGYVGAHEQVLDSARETAQQVGPKVGRAYRSVEREAGWSGVRDQVDAFLIEFEDYCSSLMPAPLSMSRSILGVDLAAARXXXXXXXXXXXXXPAEAAAGSATKP 1941
++VDSMR ALGSVAD RSPAMGP D ++ND XXXXXXXXXXXXXXXXXXXX KRKQQRPHQA +EVFALSNTEDNESLQGLVRSRGSLWIGKF LPSPPAGEDESELVD+WPRKVARFVED G G+FPLEGKPNTFGSLAA KEGS SRGGAVECARRAHGLIAQALGELRPHVP XXXXXV N +S SLKP RGGKAGGS GSGG V S SPKAAAA SPGKVKPVPMSAGD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +LRGREASNGVEDMDDXXXXXXXXGGAESRGDNAGGPAGAGEMTVAAVRESLLSNPSE +P PSPQEWEVAVKKFISHVESLPPGTEQEELSLMFAAALDPTLVRLRMANTKL+GLAEACL QGE E P DD + GAKK+GFKVRLELEAPEEGAPPPDGIAGVLRAVA AA+AVEAAAR EACVICGGDTLGGLGEIKRDYKRCLPPGPREPLQFIIAEEEARVQGYVGAHEQVL A ET +VGP+VGRAYR+VEREAGWSGVRDQVDAFLIEFEDYC+SLMPAPLS SRSILGVDLAAARXXXXXXXXXXXXX GSATKP
Sbjct: 160 RQVDSMRHALGSVADFRSPAMGPADTSENDXXXXXXXXXXXXXXXXXXXXXXXXXXKRKQQRPHQALDEVFALSNTEDNESLQGLVRSRGSLWIGKFGLPSPPAGEDESELVDIWPRKVARFVEDGGGGSFPLEGKPNTFGSLAASKEGSASRGGAVECARRAHGLIAQALGELRPHVPTPPKEXXXXXVDNNPASPSLSSPSLKPGRGGKAGGSVVGSGG-VSSGSPKAAAA-SPGKVKPVPMSAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC-RLRGREASNGVEDMDDXXXXXXXXGGAESRGDNAGGPAGAGEMTVAAVRESLLSNPSEERKPGPSPQEWEVAVKKFISHVESLPPGTEQEELSLMFAAALDPTLVRLRMANTKLVGLAEACLPQGEGEAPGDDDGEXXXXXXXXXXXXXGAKKSGFKVRLELEAPEEGAPPPDGIAGVLRAVAGAAAAVEAAARVEACVICGGDTLGGLGEIKRDYKRCLPPGPREPLQFIIAEEEARVQGYVGAHEQVLREAGETVHEVGPEVGRAYRAVEREAGWSGVRDQVDAFLIEFEDYCASLMPAPLSTSRSILGVDLAAARXXXXXXXXXXXXXXXXXXXGSATKP 801
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-19_005040.1 |
| Exons | 3 |
| Model size | 1950 |
| Cds size | 1920 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12049.1597.1 >prot_E-fasciculatus_F_contig12049.1597.1 ID=prot_E-fasciculatus_F_contig12049.1597.1|Name=mRNA_E-fasciculatus_F_contig12049.1597.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=640bp
MRQALGSVADSRSPAMGPVDAAQNDEEEESDNDTDANANGGSGGAAANGK RKQQRPHQAREEVFALSNTEDNESLQGLVRSRGSLWIGKFDLPSPPAGED ESELVDLWPRKVARFVEDDGRGAFPLEGKPNTFGSLAAPKEGSVSRGGAV ECARRAHGLIAQALGELRPHVPPPPPGEEEEEVVNPASSSPSSSPSLKPV RGGKAGGSAFGSGGGVYSASPKAAAAASPGKVKPVPMSAGDSEEEDSEGE MMSGVAAGRSSEAGAGGRRGRKRQRVKGEAVAEGGGGGAAASASYQLRGR EASNGVEDMDDDSDDDDDEGGAESRGDNAGGPAGAGEMTVAAVRESLLSN PSEHEQPDPSPQEWEVAVKKFISHVESLPPGTEQEELSLMFAAALDPTLV RLRMANTKLIGLAEACLSQGEEDPEDDGEDSDSPNGGGGDRKGGAKKNGF KVRLELEAPEEGAPPPDGIAGVLRAVAAAASAVEAAARAEACVICGGDTL GGLGEIKRDYKRCLPPGPREPLQFIIAEEEARVQGYVGAHEQVLDSARET AQQVGPKVGRAYRSVEREAGWSGVRDQVDAFLIEFEDYCSSLMPAPLSMS RSILGVDLAAARRAAAAAAAAAAATPAEAAAGSATKPDG* back to topmRNA from alignment at E-fasciculatus_F_contig12049:275..3497- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig12049.1597.1 ID=mRNA_E-fasciculatus_F_contig12049.1597.1|Name=mRNA_E-fasciculatus_F_contig12049.1597.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3223bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12049:275..3497- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) TTTCCTTCGTTCCATCAAAAGGTGGATTCCATGCGGCAAGCTTTGGGCTC
TGTCGCCGACTCTCGCTCCCCCGCGATGGGGCCAGTAGACGCCGCGCAGA
ACGACGAGGAAGAAGAGAGTGACAACGACACCGACGCTAATGCTAACGGC
GGCAGTGGTGGCGCAGCAGCCAACGGCAAACGGAAGCAACAACGACCACA
CCAAGCGCGCGAGGAAGTTTTCGCTCTCTCCAACACGGAAGACAACGAGT
CTCTGCAGGGGCTTGTCCGCAGCAGGGGGTCCCTGTGGATCGGCAAGTTT
GACTTGCCCTCCCCCCCTGCGGGCGAGGACGAGTCGGAGGTGAGAGAGGA
GACCGCCCACCGGTGGTGCATGGGGTAGGTCAACGGTACGGAGCGGACAC
GCGTTTCTGTTTGAACGCTTGGACTTGCGCACGGTCACGTCATGTCGCCA
AGCTTTGTTGTGGGTTCACGATATCGCACGTCCGGGTGAAAGAATGCCTT
CCTTTTCCTGCAGGCCAGCGCGCTCCCCCTTTTTGACATCGGTCGAGCGC
AACCCTTCCCGTTTCCCCTCCGCACGTCCGGAGTGTAGCATTACATATAT
ACCCTCTATCCTTGCCTCCGGCCCTTCACGCTGCCCCTAACCCCGACAAA
AAACCCCGTGCACCAACGCCGACTGTTAATACCCCGGAACAAACACAGCT
GGTCGATCTCTGGCCTAGAAAGGTAGCGCGCTTCGTCGAAGACGATGGCC
GCGGCGCCTTCCCCCTCGAGGGGAAGCCCAACACGTTCGGGTCTCTCGCG
GCGCCGAAGGAGGGCAGCGTCAGCCGCGGGGGCGCCGTAGAATGCGCTCG
TCGGGCGCACGGGTTGATAGCCCAGGCGCTGGGGGAGCTCCGCCCGCATG
TACCACCACCACCACCGGGAGAAGAGGAGGAGGAGGTCGTCAACCCTGCA
TCTTCCTCGCCGTCGTCGTCTCCCTCTCTTAAGCCGGTTCGCGGCGGTAA
GGCGGGGGGTTCGGCATTTGGCTCCGGTGGTGGCGTTTATTCTGCTTCTC
CGAAAGCGGCGGCGGCGGCGTCGCCGGGGAAGGTTAAGCCGGTGCCCATG
TCTGCGGGTGACAGCGAAGAGGAAGACTCGGAGGGGGAGATGATGTCGGG
GGTTGCTGCTGGCCGAAGCTCGGAGGCGGGAGCGGGAGGGAGGCGGGGAC
GGAAGAGGCAGCGGGTCAAGGGCGAGGCGGTGGCGGAAGGCGGCGGCGGC
GGCGCCGCCGCAAGCGCCTCGTATCAGCTTCGCGGGCGGGAAGCAAGCAA
CGGCGTGGAAGACATGGACGATGACTCGGACGATGATGACGATGAGGGAG
GGGCGGAGAGCCGTGGTGACAACGCGGGCGGGCCGGCGGGAGCGGGAGAG
ATGACGGTTGCGGCCGTGCGCGAGTCCCTCCTCAGCAACCCTTCCGAGCA
CGAGCAGCCCGACCCGTCGCCTCAGGAATGGGAGGTCGCCGTCAAGAAGT
TCATCTCTCACGTGGAGAGCCTGCCCCCCGGCACCGAGCAGGAGGAGCTG
TCGCTCATGTTTGCCGCCGCGCTCGACCCCACCCTCGTGAGGCTGCGCAT
GGCCAACACCAAGCTCATCGGCCTTGCCGAGGCGTGCTTGTCGCAGGGGG
AGGAGGACCCCGAAGACGATGGCGAAGATTCCGACAGCCCGAACGGCGGC
GGCGGGGACCGCAAGGGCGGAGCGAAGAAGAACGGCTTCAAGGTCCGCCT
GGAGCTAGAGGCGCCGGAGGAAGGGGCGCCGCCCCCGGACGGGATAGCCG
GGGTGCTCCGGGCGGTGGCGGCGGCCGCGTCGGCGGTGGAGGCGGCAGCG
AGGGCGGAGGCGTGCGTGATCTGTGGAGGAGACACCCTCGGTGGACTGGG
GGAGATCAAGCGGGACTACAAGCGGTGCTTGCCCCCCGGCCCCCGCGAAC
CTGTAAGTGTTTTTTTCTTGTTTTTTTTTTCTCTCACGAAATCGCAATGG
ATTCGTCTCTAGCCACAGACAGCAGTAGGAGACATGTGTTTTTACGCTTT
TTTGTCTGACGACAACGTAACCAACCCATTTTTTTCTGTCCGCAGGCAAG
AGAGCTCAGGATTTTTTTTTTTCGGCAGCAATATTTTTTTTTGTGTTTGC
GTGACGAGTTTGTCTTGTGTACGTCTTCGAAATAACCGTGGTTGGCATGT
CACCGCGTGATGAATCCATCCTGTCCCCAACGGAGGGCAATCGATCATGC
ACGGTTGATATTCAGAGTGATACTCTACGGCGTTGCATGGATTGAAAATG
TGGACAGGGGTGCAGATCAGACCCACAGCAGTCGGGGGGGGGTTAGACGA
CTTGCAAGCGAAACCTCCACGCGCGTTTTTTTCCTCAGCGGCGAAAGCCA
ACTGTTTTCTGGCTGGATCGTTTTTTTGAATGCGGAAAGGGACGTTGGAG
GCAGAGGTTGGTTCCCATGCGGACAGACCAACATCGAGAAACCCCTACAA
ACACCACTACCACCATTATACCAATAACGTCATCAACACCTCCACCACCA
CCAACAACAACATCGCTGCTCGGGCTCGTTTTAGTGTGGACGACCACCAA
CCACAGCCGTAACAATAACAACACCACCACCAACGACATCACTTCTCGGG
TCGGTTTCCTTTTCGACAGACCACCACCAGCAACAACTGCAACACGGCTC
AGGTTGATTTTATTGCGGACGTCCAAATTCAACAACAGCATCAACAACAA
CGACACTTCTCAGGTTGGTTTCCTTTTTGGCAGACCACCCACCACCAACA
ACAACACCAAAACAACAGTCGCAACAAACACTGCCCATACACCCCCGCGC
TCTTGTTAATCCACAGCTCCAGTTCATCATCGCGGAGGAAGAGGCGAGAG
TGCAGGGGTACGTCGGCGCACACGAGCAGGTCCTTGACAGCGCGAGAGAA
ACGGCCCAGCAGGTGGGCCCCAAGGTCGGGCGCGCTTACCGTTCCGTGGA
GCGGGAGGCCGGGTGGAGCGGAGTGAGAGACCAGGTGGACGCGTTCTTGA
TCGAGTTTGAGGACTACTGCTCGTCGCTCATGCCCGCCCCGCTCTCCATG
AGTCGTAGCATCCTTGGGGTTGATCTCGCTGCCGCTAGACGCGCCGCCGC
CGCCGCCGCCGCCGCCGCCGCCGCCACCCCCGCTGAAGCGGCAGCAGGCT
CTGCGACCAAGCCTGACGGATGA back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig12049:275..3497- >mRNA_E-fasciculatus_F_contig12049.1597.1 ID=mRNA_E-fasciculatus_F_contig12049.1597.1|Name=mRNA_E-fasciculatus_F_contig12049.1597.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3840bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12049:275..3497- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGCGGCAAGCTTTGGGCTCTGTCGCCGACTCTCGCTCCCCCGCGATGGG GCCAGTAGACGCCGCGCAGAACGACGAGGAAGAAGAGAGTGACAACGACA CCGACGCTAATGCTAACGGCGGCAGTGGTGGCGCAGCAGCCAACGGCAAA CGGAAGCAACAACGACCACACCAAGCGCGCGAGGAAGTTTTCGCTCTCTC CAACACGGAAGACAACGAGTCTCTGCAGGGGCTTGTCCGCAGCAGGGGGT CCCTGTGGATCGGCAAGTTTGACTTGCCCTCCCCCCCTGCGGGCGAGGAC GAGTCGGAGATGCGGCAAGCTTTGGGCTCTGTCGCCGACTCTCGCTCCCC CGCGATGGGGCCAGTAGACGCCGCGCAGAACGACGAGGAAGAAGAGAGTG ACAACGACACCGACGCTAATGCTAACGGCGGCAGTGGTGGCGCAGCAGCC AACGGCAAACGGAAGCAACAACGACCACACCAAGCGCGCGAGGAAGTTTT CGCTCTCTCCAACACGGAAGACAACGAGTCTCTGCAGGGGCTTGTCCGCA GCAGGGGGTCCCTGTGGATCGGCAAGTTTGACTTGCCCTCCCCCCCTGCG GGCGAGGACGAGTCGGAGCTGGTCGATCTCTGGCCTAGAAAGGTAGCGCG CTTCGTCGAAGACGATGGCCGCGGCGCCTTCCCCCTCGAGGGGAAGCCCA ACACGTTCGGGTCTCTCGCGGCGCCGAAGGAGGGCAGCGTCAGCCGCGGG GGCGCCGTAGAATGCGCTCGTCGGGCGCACGGGTTGATAGCCCAGGCGCT GGGGGAGCTCCGCCCGCATGTACCACCACCACCACCGGGAGAAGAGGAGG AGGAGGTCGTCAACCCTGCATCTTCCTCGCCGTCGTCGTCTCCCTCTCTT AAGCCGGTTCGCGGCGGTAAGGCGGGGGGTTCGGCATTTGGCTCCGGTGG TGGCGTTTATTCTGCTTCTCCGAAAGCGGCGGCGGCGGCGTCGCCGGGGA AGGTTAAGCCGGTGCCCATGTCTGCGGGTGACAGCGAAGAGGAAGACTCG GAGGGGGAGATGATGTCGGGGGTTGCTGCTGGCCGAAGCTCGGAGGCGGG AGCGGGAGGGAGGCGGGGACGGAAGAGGCAGCGGGTCAAGGGCGAGGCGG TGGCGGAAGGCGGCGGCGGCGGCGCCGCCGCAAGCGCCTCGTATCAGCTT CGCGGGCGGGAAGCAAGCAACGGCGTGGAAGACATGGACGATGACTCGGA CGATGATGACGATGAGGGAGGGGCGGAGAGCCGTGGTGACAACGCGGGCG GGCCGGCGGGAGCGGGAGAGATGACGGTTGCGGCCGTGCGCGAGTCCCTC CTCAGCAACCCTTCCGAGCACGAGCAGCCCGACCCGTCGCCTCAGGAATG GGAGGTCGCCGTCAAGAAGTTCATCTCTCACGTGGAGAGCCTGCCCCCCG GCACCGAGCAGGAGGAGCTGTCGCTCATGTTTGCCGCCGCGCTCGACCCC ACCCTCGTGAGGCTGCGCATGGCCAACACCAAGCTCATCGGCCTTGCCGA GGCGTGCTTGTCGCAGGGGGAGGAGGACCCCGAAGACGATGGCGAAGATT CCGACAGCCCGAACGGCGGCGGCGGGGACCGCAAGGGCGGAGCGAAGAAG AACGGCTTCAAGGTCCGCCTGGAGCTAGAGGCGCCGGAGGAAGGGGCGCC GCCCCCGGACGGGATAGCCGGGGTGCTCCGGGCGGTGGCGGCGGCCGCGT CGGCGGTGGAGGCGGCAGCGAGGGCGGAGGCGTGCGTGATCTGTGGAGGA GACACCCTCGGTGGACTGGGGGAGATCAAGCGGGACTACAAGCGGTGCTT GCCCCCCGGCCCCCGCGAACCTCTGGTCGATCTCTGGCCTAGAAAGGTAG CGCGCTTCGTCGAAGACGATGGCCGCGGCGCCTTCCCCCTCGAGGGGAAG CCCAACACGTTCGGGTCTCTCGCGGCGCCGAAGGAGGGCAGCGTCAGCCG CGGGGGCGCCGTAGAATGCGCTCGTCGGGCGCACGGGTTGATAGCCCAGG CGCTGGGGGAGCTCCGCCCGCATGTACCACCACCACCACCGGGAGAAGAG GAGGAGGAGGTCGTCAACCCTGCATCTTCCTCGCCGTCGTCGTCTCCCTC TCTTAAGCCGGTTCGCGGCGGTAAGGCGGGGGGTTCGGCATTTGGCTCCG GTGGTGGCGTTTATTCTGCTTCTCCGAAAGCGGCGGCGGCGGCGTCGCCG GGGAAGGTTAAGCCGGTGCCCATGTCTGCGGGTGACAGCGAAGAGGAAGA CTCGGAGGGGGAGATGATGTCGGGGGTTGCTGCTGGCCGAAGCTCGGAGG CGGGAGCGGGAGGGAGGCGGGGACGGAAGAGGCAGCGGGTCAAGGGCGAG GCGGTGGCGGAAGGCGGCGGCGGCGGCGCCGCCGCAAGCGCCTCGTATCA GCTTCGCGGGCGGGAAGCAAGCAACGGCGTGGAAGACATGGACGATGACT CGGACGATGATGACGATGAGGGAGGGGCGGAGAGCCGTGGTGACAACGCG GGCGGGCCGGCGGGAGCGGGAGAGATGACGGTTGCGGCCGTGCGCGAGTC CCTCCTCAGCAACCCTTCCGAGCACGAGCAGCCCGACCCGTCGCCTCAGG AATGGGAGGTCGCCGTCAAGAAGTTCATCTCTCACGTGGAGAGCCTGCCC CCCGGCACCGAGCAGGAGGAGCTGTCGCTCATGTTTGCCGCCGCGCTCGA CCCCACCCTCGTGAGGCTGCGCATGGCCAACACCAAGCTCATCGGCCTTG CCGAGGCGTGCTTGTCGCAGGGGGAGGAGGACCCCGAAGACGATGGCGAA GATTCCGACAGCCCGAACGGCGGCGGCGGGGACCGCAAGGGCGGAGCGAA GAAGAACGGCTTCAAGGTCCGCCTGGAGCTAGAGGCGCCGGAGGAAGGGG CGCCGCCCCCGGACGGGATAGCCGGGGTGCTCCGGGCGGTGGCGGCGGCC GCGTCGGCGGTGGAGGCGGCAGCGAGGGCGGAGGCGTGCGTGATCTGTGG AGGAGACACCCTCGGTGGACTGGGGGAGATCAAGCGGGACTACAAGCGGT GCTTGCCCCCCGGCCCCCGCGAACCTCTCCAGTTCATCATCGCGGAGGAA GAGGCGAGAGTGCAGGGGTACGTCGGCGCACACGAGCAGGTCCTTGACAG CGCGAGAGAAACGGCCCAGCAGGTGGGCCCCAAGGTCGGGCGCGCTTACC GTTCCGTGGAGCGGGAGGCCGGGTGGAGCGGAGTGAGAGACCAGGTGGAC GCGTTCTTGATCGAGTTTGAGGACTACTGCTCGTCGCTCATGCCCGCCCC GCTCTCCATGAGTCGTAGCATCCTTGGGGTTGATCTCGCTGCCGCTAGAC GCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCACCCCCGCTGAAGCG GCAGCAGGCTCTGCGACCAAGCCTGACGGATGACTCCAGTTCATCATCGC GGAGGAAGAGGCGAGAGTGCAGGGGTACGTCGGCGCACACGAGCAGGTCC TTGACAGCGCGAGAGAAACGGCCCAGCAGGTGGGCCCCAAGGTCGGGCGC GCTTACCGTTCCGTGGAGCGGGAGGCCGGGTGGAGCGGAGTGAGAGACCA GGTGGACGCGTTCTTGATCGAGTTTGAGGACTACTGCTCGTCGCTCATGC CCGCCCCGCTCTCCATGAGTCGTAGCATCCTTGGGGTTGATCTCGCTGCC GCTAGACGCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCACCCCCGC TGAAGCGGCAGCAGGCTCTGCGACCAAGCCTGACGGATGA back to top
|