mRNA_E-fasciculatus_F_contig12048.1596.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12048.1596.1
Unique NamemRNA_E-fasciculatus_F_contig12048.1596.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12048.1596.1 vs. uniprot
Match: D7FJY9_ECTSI (Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJY9_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 2.520e-43
Identity = 100/106 (94.34%), Postives = 102/106 (96.23%), Query Frame = 2 
Query:    8 QLCPASGSLEGAGGGLAQQQ-YFTQVCSLCNYLKPARAHHXXXXXXXXXXXXXXXXXXXXXVGAGNYKAYLLTLLYACLSSGAMLAVLWRRWWLGRAPESGSAATT 322
            QLCPASGSLEGAGGGLAQQQ YFTQVCSLCNYLKPARAHHXXXXXXXXXXXXXXXXXXXXXVGAGNYKAYLLTLLYACLSSGAML +LWRRW +GRAPESGSAA T
Sbjct:   92 QLCPASGSLEGAGGGLAQQQQYFTQVCSLCNYLKPARAHHXXXXXXXXXXXXXXXXXXXXXVGAGNYKAYLLTLLYACLSSGAMLVILWRRWRMGRAPESGSAAAT 197
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12048.1596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJY9_ECTSI2.520e-4394.34Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12048contigE-fasciculatus_F_contig12048:1645..3661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, DHHC-type, palmitoyltransferase
Ec32 orthologEc-18_003140.2
Exons4
Model size324
Cds size324
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12048.1596.1prot_E-fasciculatus_F_contig12048.1596.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12048 1645..3661 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927713.3297513-CDS-E-fasciculatus_F_contig12048:1644..17051622927713.3297513-CDS-E-fasciculatus_F_contig12048:1644..1705Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12048 1645..1705 +
1695995662.276644-CDS-E-fasciculatus_F_contig12048:1644..17051695995662.276644-CDS-E-fasciculatus_F_contig12048:1644..1705Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12048 1645..1705 +
1622927713.3448853-CDS-E-fasciculatus_F_contig12048:2277..23571622927713.3448853-CDS-E-fasciculatus_F_contig12048:2277..2357Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12048 2278..2357 +
1695995662.289-CDS-E-fasciculatus_F_contig12048:2277..23571695995662.289-CDS-E-fasciculatus_F_contig12048:2277..2357Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12048 2278..2357 +
1622927713.3568602-CDS-E-fasciculatus_F_contig12048:2905..29721622927713.3568602-CDS-E-fasciculatus_F_contig12048:2905..2972Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12048 2906..2972 +
1695995662.298866-CDS-E-fasciculatus_F_contig12048:2905..29721695995662.298866-CDS-E-fasciculatus_F_contig12048:2905..2972Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12048 2906..2972 +
1622927713.3704033-CDS-E-fasciculatus_F_contig12048:3545..36611622927713.3704033-CDS-E-fasciculatus_F_contig12048:3545..3661Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12048 3546..3661 +
1695995662.3084595-CDS-E-fasciculatus_F_contig12048:3545..36611695995662.3084595-CDS-E-fasciculatus_F_contig12048:3545..3661Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12048 3546..3661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12048.1596.1

>prot_E-fasciculatus_F_contig12048.1596.1 ID=prot_E-fasciculatus_F_contig12048.1596.1|Name=mRNA_E-fasciculatus_F_contig12048.1596.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=108bp
GRPAVPRIGVPGRGWRRPGTATVFHAGLLSVQLPQAGKGSPLPNMQPVCP
EDGSPLPLGGAMCRCRELQGLSTDVALRLPKLRRHARGPLEAVVAGPRTR
KRLRSNDI
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mRNA from alignment at E-fasciculatus_F_contig12048:1645..3661+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12048.1596.1 ID=mRNA_E-fasciculatus_F_contig12048.1596.1|Name=mRNA_E-fasciculatus_F_contig12048.1596.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2017bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12048:1645..3661+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGACGACCAGCTGTGCCCCGCATCGGGGTCCCTGGAAGGGGCTGGCGGCG
GCCTGGCACAGGTGTTTTATCTGTCTTGTTCTGTTTGATTGTAGAAGATG
CGCATGCGAAATCACGAGACGAAGACTGTATGCCCGGTCTAGATAGTATC
ACAGCAGTCACAGGGTGTGCGTTGAGAGTCTTTGCAGCGAGTGTGGTGTT
TTGGATGGAGGGTTTGCCGATTGGAGGGGGAGGGGGTACGGGGAAATGGA
GGTGGTGGTGGTGGTGGTGGTAGGTTCGACGGCAGGAGTGTGTGTTATCT
AACGTACTTGTTTCTGCGTGTCTCAAGATGGAGGCGATTGCGATACGTCA
AGGCGGGCACAGTTGCCGATCGCAGATAAACACCAGGCGTGTTTGCCGAA
AGCGTCGGACGTGTCCTCGGCTGCTGCAACGACATTCACGCCGACGTGTA
AGTTAGCGGCGGGGCGTGTTTGATTCGGCGTCCGGCAGCGAAATCGGTCG
ATTCGAGATCATCATGGCTTTGCACAAGACCTGACAACAAACGAGAGAGT
CTCTAAACGCTTTATTGGTCGCCCCGCACCTCCTTGCCTTCGTTCTGTTG
TGGTGTGTTTTTTCGCCCCGTTTTTGTCCACAGCAACAGTATTTCACGCA
GGTCTGCTCTCTGTGCAACTACCTCAAGCCGGCAAGGGCTCACCACTGCC
GAATATGCAACCGGTGAGAACTACAAGTAGATATATTTGTTGTGGTTGTT
CACAAGCGTCTTCCTCTCTCCCCTTGCTTTATTATTGTACTGACATCGCG
AATCGCTTTATTATTGTACTGATATCGCGATATCGCGAATCCTTACTCGC
CAGCGTCGGTTCTTTACGATCGTCTGGTGGTGCTTGGTTCTTTGTGTGTG
CACGCCTGTCATCGAGGATATCTTCAGGTTACTAATGCTCTGACGCTGTT
GCTGCTTTGCTTTTTGGACTGCCAGGACTCGCGTTGTTGAGCGTGAAACC
ATGGCCATGCTTGTGTTTTTGCAATGCTTGCCTGGAACACCCGGCAACAT
TAGTCCTATACATCTACCCCCCCGCGCCATCTTAACCTCTGTGGCCTCTC
TGTCGCGAATCGTTGACTATACACCGGTTGTCACAGATCATTTTCGGGTT
GCTGGCTTCGCCTTTGACGCGATTTGATTGGTCGGCGTCGTTGGCCTTAC
CTTTCTCTGCCTTGACACGACGATCGTTTCGTTTCGCCGTTTCCGTCCTC
GTCCGCGGCAGGTGTGTCCTGAAGATGGATCACCACTGCCACTGGGTGGG
GCGATGTGTCGGTGCAGGGAACTACAAGGTGAGGTTTTAACCCTCTCTCA
TCACAAGAATGTTAGGGTTCGGGGGGTTCTTAGGGTAAGGGTAAAGCTCT
CTGCTAGGGTCTTACGATTAGAGGGCCAGCGTCAGTTTTTTTTTTTCCCC
GCCACAGCAGCAGTCGACGATACGCGGCAGCAAATCCTCTGTTCCCGCTG
TTAGGGTTAGAGTTATTTTTTATTTTATTTTATTTTATTTTTTGAATGCT
CCACCACGGCATGAAACAACGACACCCAACGACAATTGGGGCTCTTGGAC
GTCCTACTGTACCGTGGCAGGGGCTCGAAAGCGGTGGACATGTTTTACAA
CCTCTGTTTCATTTGGGTTATCTTTTACCTAGGTAGGGGTTAAATAGTTG
CGGCTGACGTGGCGTAATTTCGCGTCCGGCTCCAGTGCTCCACCTTGCCC
CCCCCCCCCCCCGGTCGAAACAGGCGTTCCTGCCGATTTTGCTCTGTGTC
TGCGTAGTAAGCATTTTCGAATAATACACCACACAGCCCCGAATCAAGCT
CTCCGCCTTGTAAGACCCCCCGCCGTGCGCTGCCGTTGACACATCGCTCA
GGCTTATCTACTGACGTTGCTCTACGCCTGCCTAAGCTCCGGCGCCATGC
TCGCGGTCCTCTGGAGGCGGTGGTGGCTGGGCCGCGCACCCGAAAGCGGC
TCCGCAGCAACGACATC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12048:1645..3661+

>mRNA_E-fasciculatus_F_contig12048.1596.1 ID=mRNA_E-fasciculatus_F_contig12048.1596.1|Name=mRNA_E-fasciculatus_F_contig12048.1596.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=648bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12048:1645..3661+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGACGACCAGCTGTGCCCCGCATCGGGGTCCCTGGAAGGGGCTGGCGGCG
GCCTGGCACAGGGACGACCAGCTGTGCCCCGCATCGGGGTCCCTGGAAGG
GGCTGGCGGCGGCCTGGCACAGCAACAGTATTTCACGCAGGTCTGCTCTC
TGTGCAACTACCTCAAGCCGGCAAGGGCTCACCACTGCCGAATATGCAAC
CGCAACAGTATTTCACGCAGGTCTGCTCTCTGTGCAACTACCTCAAGCCG
GCAAGGGCTCACCACTGCCGAATATGCAACCGGTGTGTCCTGAAGATGGA
TCACCACTGCCACTGGGTGGGGCGATGTGTCGGTGCAGGGAACTACAAGG
TGTGTCCTGAAGATGGATCACCACTGCCACTGGGTGGGGCGATGTGTCGG
TGCAGGGAACTACAAGGCTTATCTACTGACGTTGCTCTACGCCTGCCTAA
GCTCCGGCGCCATGCTCGCGGTCCTCTGGAGGCGGTGGTGGCTGGGCCGC
GCACCCGAAAGCGGCTCCGCAGCAACGACATCGCTTATCTACTGACGTTG
CTCTACGCCTGCCTAAGCTCCGGCGCCATGCTCGCGGTCCTCTGGAGGCG
GTGGTGGCTGGGCCGCGCACCCGAAAGCGGCTCCGCAGCAACGACATC
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