mRNA_E-fasciculatus_F_contig12046.1592.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12046.1592.1
Unique NamemRNA_E-fasciculatus_F_contig12046.1592.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12046.1592.1 vs. uniprot
Match: D8LD69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD69_ECTSI)

HSP 1 Score: 259 bits (662), Expect = 7.770e-87
Identity = 135/147 (91.84%), Postives = 140/147 (95.24%), Query Frame = 1 
Query:    1 MAILRIAAAGLLGLASSAWAATVTVDLTPCILVPNTITQDNGDTPDAYVTSTFYQGYWGATQLTPTGTGDLTNSATSGKCNVVYVGIPVSEAEKSELQAYSRTFKVRIVYFNAAETANDPEVNSRLGISQDFSEPLISAPFISLASE 441
            MAILR+AAAGLLGLASSAWAATVTVDL PCIL P+TITQDNGDTPDAYVTSTFYQGYWGATQLT TGT DLTNS TSGKCNVVYVGIPV+EA+K ELQ YSRTFKVRIVYFNAAETANDPEVNSRLGISQDFSEPLISAPFI+LASE
Sbjct:    1 MAILRMAAAGLLGLASSAWAATVTVDLQPCILAPSTITQDNGDTPDAYVTSTFYQGYWGATQLTSTGTSDLTNSGTSGKCNVVYVGIPVTEAQKLELQDYSRTFKVRIVYFNAAETANDPEVNSRLGISQDFSEPLISAPFIALASE 147
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BLAST of mRNA_E-fasciculatus_F_contig12046.1592.1 vs. uniprot
Match: A0A6H5K3S3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3S3_9PHAE)

HSP 1 Score: 244 bits (622), Expect = 2.110e-73
Identity = 126/146 (86.30%), Postives = 137/146 (93.84%), Query Frame = 1 
Query:    1 MAILRIAAAGLLGLASSAWAATVTVDLTPCILVPNTITQDNGDTPDAYVTSTFYQGYWGATQLTPTGTGDLTNSATSGKCNVVYVGIPVSEAEKSELQAYSRTFKVRIVYFNAAETANDPEVNSRLGISQDFSEPLISAPFISLAS 438
            MA+LR+AAAGLLGLASSAWAATVTVDL PCIL P+ ITQDNGDTPDAYVTSTFY+GYWGA Q+T TGT +LTNS TSGKCNVVYVGIPV+EA+K +LQ YSRTFKVRIVYFNAAETANDPEVNSRLGISQDFSEPLISAPFI+LA+
Sbjct:   14 MAMLRMAAAGLLGLASSAWAATVTVDLQPCILAPSKITQDNGDTPDAYVTSTFYKGYWGAKQVTLTGTSELTNSLTSGKCNVVYVGIPVTEAQKVQLQDYSRTFKVRIVYFNAAETANDPEVNSRLGISQDFSEPLISAPFIALAT 159
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BLAST of mRNA_E-fasciculatus_F_contig12046.1592.1 vs. uniprot
Match: D7G056_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G056_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 2.840e-25
Identity = 60/123 (48.78%), Postives = 78/123 (63.41%), Query Frame = 1 
Query:   67 VTVDLTPCILVPNTITQDNGDTPDAYVTSTFYQGYWGATQ---LTPTGTGDLTNS--ATSGKCNVVYVGIPVSEAEKSELQAYSRTFKVRIVYFNAAETANDPEVNSRLGISQDFSEPLISAP 420
            V VD+ PCIL   ++ +D G    AY+ + FY+G+W ATQ     P    DL  +  A  GKCNVVYVGI  S A+K +LQ YSR F VRIVYF+AA+T  D EV +RLG+  +F +P + AP
Sbjct:  604 VQVDMVPCILASESVEKDVGPVASAYLFNEFYKGFWTATQNVQAPPAAVLDLVEALDADHGKCNVVYVGIVPSAAQKQQLQDYSRKFNVRIVYFDAADTILDTEVQARLGMQSNFDQPFVGAP 726
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12046.1592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LD69_ECTSI7.770e-8791.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3S3_9PHAE2.110e-7386.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G056_ECTSI2.840e-2548.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12046contigE-fasciculatus_F_contig12046:339..3844 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue2.3e-22
Seed eggNOG ortholog2880.D7G056
EggNOG OGs28IRF@1,2QR2R@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons3
Model size444
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12046.1592.1prot_E-fasciculatus_F_contig12046.1592.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12046 339..3844 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927713.1011834-CDS-E-fasciculatus_F_contig12046:338..4491622927713.1011834-CDS-E-fasciculatus_F_contig12046:338..449Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12046 339..449 +
1695995662.1643512-CDS-E-fasciculatus_F_contig12046:338..4491695995662.1643512-CDS-E-fasciculatus_F_contig12046:338..449Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12046 339..449 +
1622927713.1186519-CDS-E-fasciculatus_F_contig12046:2663..27381622927713.1186519-CDS-E-fasciculatus_F_contig12046:2663..2738Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12046 2664..2738 +
1695995662.1763945-CDS-E-fasciculatus_F_contig12046:2663..27381695995662.1763945-CDS-E-fasciculatus_F_contig12046:2663..2738Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12046 2664..2738 +
1622927713.1344829-CDS-E-fasciculatus_F_contig12046:3586..38441622927713.1344829-CDS-E-fasciculatus_F_contig12046:3586..3844Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12046 3587..3844 +
1695995662.1937218-CDS-E-fasciculatus_F_contig12046:3586..38441695995662.1937218-CDS-E-fasciculatus_F_contig12046:3586..3844Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12046 3587..3844 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12046.1592.1

>prot_E-fasciculatus_F_contig12046.1592.1 ID=prot_E-fasciculatus_F_contig12046.1592.1|Name=mRNA_E-fasciculatus_F_contig12046.1592.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=148bp
MAILRIAAAGLLGLASSAWAATVTVDLTPCILVPNTITQDNGDTPDAYVT
STFYQGYWGATQLTPTGTGDLTNSATSGKCNVVYVGIPVSEAEKSELQAY
SRTFKVRIVYFNAAETANDPEVNSRLGISQDFSEPLISAPFISLASE*
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mRNA from alignment at E-fasciculatus_F_contig12046:339..3844+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12046.1592.1 ID=mRNA_E-fasciculatus_F_contig12046.1592.1|Name=mRNA_E-fasciculatus_F_contig12046.1592.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3506bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12046:339..3844+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGATTTTGAGGATCGCTGCGGCAGGGCTGTTAGGCCTTGCGTCCTC
CGCGTGGGCTGCGACCGTCACGGTGGACCTCACGCCGTGCATCCTGGTCC
CCAACACAATTGTGAGTGTGTGGTGTCCAGCAGTGTTCGTTGTGTCTTTT
TGTTGAAGGAACCATAAATCGACTTTGTTTGATGCACTTGCATCCATGCA
GCTTGCTGCTGGCTGGTGTAAAAGAAAGGCTGGTTGCAGGACCAGCTGCC
AACATCTCAATCGCTCGAGAGGAACAGGTTGAGGTCATGCGGAGCACGGC
GCTGTGCTCTCTCCTGTCCCCGCCTGCGCAATAGTAGCTTTCGGTCGATA
CCTGCACACACCCACCACGTGCAACTTGTCTATGCCAGCCATGTTGCTCA
CATTCGCCGGGGATTCCCAAAAGAAGAGCGGATGATGATGCACGGGGGAA
CATCGCCAGGCTCTCGCTCTATTTCAACAAAGGGGAGGGATGCTTGTATC
TATCTTCCCATCTTGCCGGAAATGTAGCGAAATTATCACCAAGACCTGAC
ACGCTTGAAGGTAGTGGCGGCCCGGACGTTGCATAGCGCGGAGAGGGAGA
GGTGTTACCACACCCTCTGACGTGCAGGTCGTGCTCTGCCCAGAGAGAGA
CCGCGGCGCCCCCGCCCAGATATCTAGTCGATGTGTGTATATCGAATGTT
TCTCCGACCGTTACATCTGGTCTTGGTAGATTCTTGAACAACTAGAATAG
TATTTAGTATTGGACTGACCATGGACTGGCGTGCACGACAAATGCGCCAG
CTGCTGCCGGCATGATTTTTTTTCTCTTACACAACTTTACTCCCAACTAT
CAGGGCTGTATCTATAGCATAGAATTGTACAACGGGTGGTTGTCGGGTTG
TTGTGTGTGTTCGACTGGCCGATCGATCAGGGAAGTCAGAAGCCGGTACA
ATAGTCTAGTCTCAGTGCGGCTGAAAATGCTTCTGATGGTCCGGTCTGTA
GTCCAAGGCCACGACCTGGGAACCGCGTGAGGGGGCGTCACATGGAGGAG
GCAAGGCACTGCTCTCCGGAGTTTAGTCTAGACAGGAACGAACGACAACA
CAGCAGTATACACTACACGAATGACACTGCACGTGTGATGATGTGTGTGT
GCATCCTGTTCGTTCTTGATGTTTTTGGCCCGGTTTACGCTTGCTTGCTT
GTGCACGCCTCCTCCATGTGACTTGCGTACGCTATTGTAGCACAGCAGGC
CAGTACATAATATCGTAAAGTATGCATACTTCGAAGCTTCGAAAACATGC
CAGACATGTAGAACAATATTATGCTTAGTCTACACTTGACTATGCATACC
TGTTTCGTTGGAAATTTCCCCAGGGAGTGGTGGTCAAGTATCGTTCCACG
GTACCATGTATGTATAATGTATTTCAAGTATCTTGCCTACCATCGTTGGT
TGATGTCGCAGGTCATGAGGGGCGATGAGGTTTGTCGACAACAACAGCAA
AATAGTATATTAATAACAGCAGAGTTTTTCGGTGGAAGCTTCATGTGTGC
TGAATCGCTCCAGGAAGTAAGTACGTCTTGGGTGTTGTTCGTGTCGGTCG
GGAAAGTTAAAGCAGGATTTTAAACACACACACATCTTCTACCTCTCTCG
GATGATGTTCGAAGGAACGGTATCTATCTATGTACCAAGCAGAGACGACC
ACGACGACGACAACATCATTCATTGTTGGTAGGAATGAATTGATGCCTTG
GGTTCGGGGAGGCTCTATGAATGCCCCGTGGGTCGGCCGAGCTGTTGTAA
CACGCTGCGGATCCAACGGTAGGGAGTGGGGCGAAAAGCACAATGATTAT
GATTAAAACACAAACGACGAGGAGTACCCAGGTCGTTCTACAACGAACAC
TACTTTTCTTGTCTTGCTTGGAGTGAGTTGGAGGCGTTTTCTCCAAGGAA
ATTCCCGCACTGTTCCACACGGGGAGGCCGGGGAGACGGGGGGGGGGGGG
GAGAAATGATAAATCGCAACTAAAAACACCTCCGGCTCCTTTCGATCGAG
CATGTGCCCACGCCAGGGGAAATTTCGTCGAGCCCATCCACGTGCCCCCG
CCAGCCCCCGAAAGGAACGATTGGCCATCGGTGATCGGTCCTGTGGGAAC
AATGCTCCGTCCTCTCGAAGACGACGCGCGGTCAATGGTCTGGCTGCTAG
AGCATGCAAAACACAAAGAAAGATTTCGCCCTCCCACCCCCCGGGAGATC
GTACTTATTTTTGACGACACCGGTGGCTCCTCCTTTCTATCTTTCTGGTG
TTCGCGAACCGTTTTCTTTCTCCAGACCCAGGATAACGGCGACACGCCGG
ACGCCTACGTGACGTCTACATTCTACCAGGGCTACTGGGGGGCAACGCAG
GTGACCATTTTTTTTCGTTTGGCGTGTGTGTCGTCGTTGTCATCACCAGC
CGTTGAACATATCACGTCGGGTTCTCGGTCTTCTTGTTAGTCTTATTTGC
GTCTCTCTCGCGCCAATAATGGCGAGGGGTATCTCAAAACCCCGTCAAAA
ATGACGGGCCTTCAAGACGACCCTCATCAGTATGACCGGCCGTGGAGTTC
AGCGTGAAAGAAGGGGGACCCCAGAGAAACACTCGTGTCTCTTGTTTGCT
TTTCCCAACGGGTTCAATGTTTTCCGGGTCTCCTGTGCAGAGAGCAAGCA
GCATATGGAGTCCCTTTGCAAGATTTTTTTTGTTTTTTCTTGAGCCTTGC
CTCCTACTCCTGTCGCGTTTGCCGACCTCTGTGGAACAAGTAGGACATAG
ACTAGAACTATCGCGGCAGTTTCAAGGTCGTCAATGATTCATTCTGAGCG
GAGATGGTGTCGGTTCACGTGTGACATGTATGAAAAGGAATGCGGTGTGA
CTTCGACGATGACGTGTCACTGCCTGACTGCCTCGTCGAGGTCAGTCCTG
GACAATGAAGAGCTGTGTGGTGTGTCAACCAACGGTGTAAAAATAAATAA
ATATCTAAATATATGCAAGTATATCTGAGGTTAGGAAACTACATAGCACG
AGGGTTCTTCAGAGCACAAGCAAACCCCCCTCGATTGGACGAGGGTTTCA
CACCTCTCACTCCCCCCACCAACAGGCGGACGTGCATACAATGTGTGACA
ACGCTACACCTGCCTTTGACCACTATAGTCTTACCCCCCCCCCCCCCCCC
CCCCCCCTCCTGCCGGCCCTTATCCTTTCCCTCCACGGTGACCCCCAGCT
GACGCCGACGGGGACGGGTGACCTCACCAACTCGGCCACCTCCGGCAAGT
GCAACGTCGTCTACGTCGGCATCCCGGTCAGCGAGGCCGAGAAGAGCGAG
CTCCAGGCCTACTCGCGGACCTTCAAGGTCCGCATCGTGTACTTCAACGC
CGCCGAGACCGCCAACGACCCGGAGGTTAACTCCCGTCTCGGCATCTCGC
AGGATTTCTCGGAGCCCCTCATCTCCGCCCCGTTCATCTCCCTCGCCAGT
GAGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12046:339..3844+

>mRNA_E-fasciculatus_F_contig12046.1592.1 ID=mRNA_E-fasciculatus_F_contig12046.1592.1|Name=mRNA_E-fasciculatus_F_contig12046.1592.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=888bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12046:339..3844+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGATTTTGAGGATCGCTGCGGCAGGGCTGTTAGGCCTTGCGTCCTC
CGCGTGGGCTGCGACCGTCACGGTGGACCTCACGCCGTGCATCCTGGTCC
CCAACACAATTATGGCGATTTTGAGGATCGCTGCGGCAGGGCTGTTAGGC
CTTGCGTCCTCCGCGTGGGCTGCGACCGTCACGGTGGACCTCACGCCGTG
CATCCTGGTCCCCAACACAATTACCCAGGATAACGGCGACACGCCGGACG
CCTACGTGACGTCTACATTCTACCAGGGCTACTGGGGGGCAACGCAGACC
CAGGATAACGGCGACACGCCGGACGCCTACGTGACGTCTACATTCTACCA
GGGCTACTGGGGGGCAACGCAGCTGACGCCGACGGGGACGGGTGACCTCA
CCAACTCGGCCACCTCCGGCAAGTGCAACGTCGTCTACGTCGGCATCCCG
GTCAGCGAGGCCGAGAAGAGCGAGCTCCAGGCCTACTCGCGGACCTTCAA
GGTCCGCATCGTGTACTTCAACGCCGCCGAGACCGCCAACGACCCGGAGG
TTAACTCCCGTCTCGGCATCTCGCAGGATTTCTCGGAGCCCCTCATCTCC
GCCCCGTTCATCTCCCTCGCCAGTGAGTGACTGACGCCGACGGGGACGGG
TGACCTCACCAACTCGGCCACCTCCGGCAAGTGCAACGTCGTCTACGTCG
GCATCCCGGTCAGCGAGGCCGAGAAGAGCGAGCTCCAGGCCTACTCGCGG
ACCTTCAAGGTCCGCATCGTGTACTTCAACGCCGCCGAGACCGCCAACGA
CCCGGAGGTTAACTCCCGTCTCGGCATCTCGCAGGATTTCTCGGAGCCCC
TCATCTCCGCCCCGTTCATCTCCCTCGCCAGTGAGTGA
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