mRNA_E-fasciculatus_F_contig12042.1590.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12042.1590.1
Unique NamemRNA_E-fasciculatus_F_contig12042.1590.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12042.1590.1 vs. uniprot
Match: D7G8G9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8G9_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 9.170e-27
Identity = 57/68 (83.82%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:   94 MEYEYIMSSVAAVLVCVALPVLFGFHNR-VEAAPTTAQEIHWRRRLQHATCGVAVTCGYKWVIRDAWT 294
            M+YEY  SSVAAVLVCV LPVLFG+HNR VE APT AQ +HWRRRLQHATCGVAVTCGYKWVIRDA T
Sbjct:    1 MQYEYNTSSVAAVLVCVGLPVLFGYHNRQVETAPT-AQSVHWRRRLQHATCGVAVTCGYKWVIRDART 67
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12042.1590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8G9_ECTSI9.170e-2783.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12042contigE-fasciculatus_F_contig12042:2768..3608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue1.2e-23
Seed eggNOG ortholog2880.D7G8G9
Preferred nameDGK1
KEGG rclassRC00002,RC00017
KEGG koko:K16368
KEGG ReactionR09944
KEGG Pathwayko00564,ko01100,ko01110,map00564,map01100,map01110
GOsGO:0003674,GO:0003824,GO:0004143,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006629,GO:0006644,GO:0006650,GO:0006654,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019637,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046473,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:0098827,GO:1901576
EggNOG free text desc.dolichyl monophosphate biosynthetic process
EggNOG OGsCOG0170@1,KOG4453@2759
Ec32 ortholog descriptionPhosphatidate cytidylyltransferase
Ec32 orthologEc-14_002980.1
EC2.7.1.174
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categorysignal peptide
Exons1
Model size841
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12042.1590.1prot_E-fasciculatus_F_contig12042.1590.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12042 2861..3118 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927712.5205104-UTR-E-fasciculatus_F_contig12042:2767..28601622927712.5205104-UTR-E-fasciculatus_F_contig12042:2767..2860Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12042 2768..2860 +
1695995662.0827754-UTR-E-fasciculatus_F_contig12042:2767..28601695995662.0827754-UTR-E-fasciculatus_F_contig12042:2767..2860Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12042 2768..2860 +
1622927712.547992-UTR-E-fasciculatus_F_contig12042:3118..36081622927712.547992-UTR-E-fasciculatus_F_contig12042:3118..3608Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12042 3119..3608 +
1695995662.111273-UTR-E-fasciculatus_F_contig12042:3118..36081695995662.111273-UTR-E-fasciculatus_F_contig12042:3118..3608Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12042 3119..3608 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927712.5318398-CDS-E-fasciculatus_F_contig12042:2860..31181622927712.5318398-CDS-E-fasciculatus_F_contig12042:2860..3118Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12042 2861..3118 +
1695995662.101025-CDS-E-fasciculatus_F_contig12042:2860..31181695995662.101025-CDS-E-fasciculatus_F_contig12042:2860..3118Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12042 2861..3118 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12042.1590.1

>prot_E-fasciculatus_F_contig12042.1590.1 ID=prot_E-fasciculatus_F_contig12042.1590.1|Name=mRNA_E-fasciculatus_F_contig12042.1590.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=86bp
MEYEYIMSSVAAVLVCVALPVLFGFHNRVEAAPTTAQEIHWRRRLQHATC
GVAVTCGYKWVIRDAWTGDTRVYLDWEPLLWLLYE*
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mRNA from alignment at E-fasciculatus_F_contig12042:2768..3608+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12042.1590.1 ID=mRNA_E-fasciculatus_F_contig12042.1590.1|Name=mRNA_E-fasciculatus_F_contig12042.1590.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=841bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12042:2768..3608+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGCCAGCGTCGTTGAACGGCTCTATTTGTGTCTGCTGTCTGCGCCTGCG
CTGGTGCTCACGCCACCCCCCCCGACAGCAGCAAGTTTAGAAGATGGAGT
ACGAGTACATCATGTCCAGTGTGGCCGCTGTTCTTGTGTGTGTGGCGCTT
CCTGTGCTTTTTGGTTTCCATAATCGAGTTGAAGCTGCTCCAACAACCGC
CCAAGAAATACACTGGCGAAGGAGGCTGCAACACGCAACCTGCGGCGTGG
CCGTCACGTGCGGCTACAAGTGGGTCATTAGGGACGCGTGGACAGGTGAT
ACAAGGGTTTATTTGGACTGGGAACCGCTGTTGTGGCTACTTTATGAGTG
ATGTCAATTGAGACAACATCAGGTCAAACAGACCGGAGGCAAACTCGGTG
GCCACGGCCATGAGTATTTTCGTCACATTCAACTGCTGTCGCTCTGCTGT
CGCTGTGTATTGCCGCACAGCACACACACCACGTACATATTGTACAACTG
CAGCAGTACTACGTACAGACGTTGGAATTCAATCTTTTACGGTTTTATAT
AAGTTCATTCAAATAATCGCTGATCAATTTTAGCTGTATTTCCTCCGCTC
ATCTTCGAGTTGGAGCCAGCCGTGTGGAATAAGGACACCCATGTCGCGAT
TTTGATGGAGTCGATGTTCGTGGTGCAACGCCTCGATTTTGACCCACGGT
TACGTTCCTGCGTGACGATTACAAGCACCAACGTTTCGTTGACGTCATAT
CGTCGTGGTTGCGTCAGCAATGTCAATAGCATCGAATGTCCCGATGGCGT
CAGTATTGGCGCCTACGCGAAATCATTTCATGGACGGACGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12042:2768..3608+

>mRNA_E-fasciculatus_F_contig12042.1590.1 ID=mRNA_E-fasciculatus_F_contig12042.1590.1|Name=mRNA_E-fasciculatus_F_contig12042.1590.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=516bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12042:2768..3608+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGTACGAGTACATCATGTCCAGTGTGGCCGCTGTTCTTGTGTGTGT
GGCGCTTCCTGTGCTTTTTGGTTTCCATAATCGAGTTGAAGCTGCTCCAA
CAACCGCCCAAGAAATACACTGGCGAAGGAGGCTGCAACACGCAACCTGC
GGCGTGGCCGTCACGTGCGGCTACAAGTGGGTCATTAGGGACGCGTGGAC
AGGTGATACAAGGGTTTATTTGGACTGGGAACCGCTGTTGTGGCTACTTT
ATGAGTGAATGGAGTACGAGTACATCATGTCCAGTGTGGCCGCTGTTCTT
GTGTGTGTGGCGCTTCCTGTGCTTTTTGGTTTCCATAATCGAGTTGAAGC
TGCTCCAACAACCGCCCAAGAAATACACTGGCGAAGGAGGCTGCAACACG
CAACCTGCGGCGTGGCCGTCACGTGCGGCTACAAGTGGGTCATTAGGGAC
GCGTGGACAGGTGATACAAGGGTTTATTTGGACTGGGAACCGCTGTTGTG
GCTACTTTATGAGTGA
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