mRNA_E-fasciculatus_F_contig1204.1587.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1204.1587.1
Unique NamemRNA_E-fasciculatus_F_contig1204.1587.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1204.1587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1204contigE-fasciculatus_F_contig1204:776..1436 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size301
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1204.1587.1prot_E-fasciculatus_F_contig1204.1587.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1204 776..1433 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927712.2216613-CDS-E-fasciculatus_F_contig1204:775..8621622927712.2216613-CDS-E-fasciculatus_F_contig1204:775..862Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1204 776..862 -
1695995661.9554582-CDS-E-fasciculatus_F_contig1204:775..8621695995661.9554582-CDS-E-fasciculatus_F_contig1204:775..862Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1204 776..862 -
1622927712.2319684-CDS-E-fasciculatus_F_contig1204:1026..11541622927712.2319684-CDS-E-fasciculatus_F_contig1204:1026..1154Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1204 1027..1154 -
1695995661.9654496-CDS-E-fasciculatus_F_contig1204:1026..11541695995661.9654496-CDS-E-fasciculatus_F_contig1204:1026..1154Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1204 1027..1154 -
1622927712.2434912-CDS-E-fasciculatus_F_contig1204:1351..14331622927712.2434912-CDS-E-fasciculatus_F_contig1204:1351..1433Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1204 1352..1433 -
1695995661.9750028-CDS-E-fasciculatus_F_contig1204:1351..14331695995661.9750028-CDS-E-fasciculatus_F_contig1204:1351..1433Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1204 1352..1433 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927712.2567794-UTR-E-fasciculatus_F_contig1204:1433..14361622927712.2567794-UTR-E-fasciculatus_F_contig1204:1433..1436Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1204 1434..1436 -
1695995661.9868317-UTR-E-fasciculatus_F_contig1204:1433..14361695995661.9868317-UTR-E-fasciculatus_F_contig1204:1433..1436Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1204 1434..1436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1204.1587.1

>prot_E-fasciculatus_F_contig1204.1587.1 ID=prot_E-fasciculatus_F_contig1204.1587.1|Name=mRNA_E-fasciculatus_F_contig1204.1587.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=99bp
MLTETRACYACEELIPAGSPACTTRVYASHNPRGFPDGYRVYAHLYLREC
INLQNQEGHRVHGRAPAPIEVGQQCYDHLPYHETQNGGGIIEVHDVIIT
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mRNA from alignment at E-fasciculatus_F_contig1204:776..1436-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1204.1587.1 ID=mRNA_E-fasciculatus_F_contig1204.1587.1|Name=mRNA_E-fasciculatus_F_contig1204.1587.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=661bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1204:776..1436- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATAATGTTAACCGAAACGCGCGCCTGCTACGCGTGCGAAGAGCTCATCCC
AGCGGGATCTCCTGCGTGTACCACCCGCGTTTACGGTAAGCCAAAATCCA
CCACCGTTCCCACTTTTCATCCATCCATATAATATATGTATGTAGACTAT
ATGTGCTTCTGTCACGCATGCCTCGCTACATGTACACCTCTTGCTATCTG
TAGCCTATCTATTATCATCCTGTTCATCATGCTTCACATCAACGCCTGCC
TCCGTTTCCTTCTTCCTGCATCCCTCCTTCAGCATCACACAACCCCCGAG
GATTTCCTGACGGCTACCGCGTCTACGCTCACCTCTACCTCCGAGAGTGC
ATCAACCTTCAAAACCAAGAGGGTCATCGCGTCCACGGCCGCGCACCCGC
GCCCATCGAAGTAAGTACACGCAACAACAAACAGCAGCGACAGCAGTCAA
CCTCTTCCGACTTCCAAAATCATCTTCCTTTCCTTCTCACTTCCTGCCCG
TAACATTCTATTTTTCGTCGTCACAAACACCCTACCACCCTTCTCTTCTC
GTCCGCGCTGTCAACCCTTTTCAGGTTGGCCAACAATGCTACGACCACCT
CCCATACCACGAAACTCAAAACGGTGGCGGGATCATCGAAGTTCATGACG
TCATCATCACG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1204:776..1436-

>mRNA_E-fasciculatus_F_contig1204.1587.1 ID=mRNA_E-fasciculatus_F_contig1204.1587.1|Name=mRNA_E-fasciculatus_F_contig1204.1587.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=594bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1204:776..1436- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTAACCGAAACGCGCGCCTGCTACGCGTGCGAAGAGCTCATCCCAGC
GGGATCTCCTGCGTGTACCACCCGCGTTTACGATGTTAACCGAAACGCGC
GCCTGCTACGCGTGCGAAGAGCTCATCCCAGCGGGATCTCCTGCGTGTAC
CACCCGCGTTTACGCATCACACAACCCCCGAGGATTTCCTGACGGCTACC
GCGTCTACGCTCACCTCTACCTCCGAGAGTGCATCAACCTTCAAAACCAA
GAGGGTCATCGCGTCCACGGCCGCGCACCCGCGCCCATCGAACATCACAC
AACCCCCGAGGATTTCCTGACGGCTACCGCGTCTACGCTCACCTCTACCT
CCGAGAGTGCATCAACCTTCAAAACCAAGAGGGTCATCGCGTCCACGGCC
GCGCACCCGCGCCCATCGAAGTTGGCCAACAATGCTACGACCACCTCCCA
TACCACGAAACTCAAAACGGTGGCGGGATCATCGAAGTTCATGACGTCAT
CATCACGGTTGGCCAACAATGCTACGACCACCTCCCATACCACGAAACTC
AAAACGGTGGCGGGATCATCGAAGTTCATGACGTCATCATCACG
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