mRNA_E-fasciculatus_F_contig12033.1584.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12033.1584.1 vs. uniprot
Match: A0A6H5KWU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU5_9PHAE) HSP 1 Score: 200 bits (508), Expect = 1.470e-54 Identity = 147/233 (63.09%), Postives = 152/233 (65.24%), Query Frame = 3
Query: 138 YDDPCLVCGGLDNPDKALLCDGCDGCYHMYCLTPPLKRAPKGDWLCPKCAKKILDASGDNDVSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEESSXXXXXXXXXXXXGVVDANESGEETESDDAEDTAARLGDDAGSDAVSEGEXXXXXEDICLVCCEVRDPDRILRCSICSGGGSGMGIYHNECLPKPLDSMPAEGE 836
YDDPCLVCGGLDNPDKALLCDGCDGCYH+YCL+PPLKRAPKGDWLCPKC +K+LDASGD+DV A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXX XXXX GVV AN EDICLVCCEVRDPDRILRCS CSGGGSGMGIYHNECLPKPLDSMPAEGE
Sbjct: 1151 YDDPCLVCGGLDNPDKALLCDGCDGCYHVYCLSPPLKRAPKGDWLCPKCVEKVLDASGDDDVPASASTTGPARKGKGSSASKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQQEMRLAALXXXXXXXXXXXXLANNAN--GVVGANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEEEEEEDICLVCCEVRDPDRILRCSSCSGGGSGMGIYHNECLPKPLDSMPAEGE 1381
BLAST of mRNA_E-fasciculatus_F_contig12033.1584.1 vs. uniprot
Match: D8LN06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN06_ECTSI) HSP 1 Score: 124 bits (311), Expect = 1.230e-30 Identity = 65/91 (71.43%), Postives = 66/91 (72.53%), Query Frame = 3
Query: 564 GVVDANESGEETESDDAEDTAARLGDDAGSDAVSEGEXXXXXEDICLVCCEVRDPDRILRCSICSGGGSGMGIYHNECLPKPLDSMPAEGE 836
GVVDANESGEETESD E TA EDICLVCCEVRDPDRILRCS CSGGGSGMGIYHNECLPKPL+SMPAEGE
Sbjct: 25 GVVDANESGEETESDGPEATAXXXXXXXXXXXXXXXTEEEEEEDICLVCCEVRDPDRILRCSNCSGGGSGMGIYHNECLPKPLESMPAEGE 115
BLAST of mRNA_E-fasciculatus_F_contig12033.1584.1 vs. uniprot
Match: A0A7S1JGF3_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JGF3_9EUGL) HSP 1 Score: 84.7 bits (208), Expect = 1.150e-16 Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 3
Query: 141 DDPCLVCGGLDNPDKALLCDGCDGCYHMYCLTPPLKRAPKGDWLCPKCAKK 293
++PC++CGG + ++++LCDGCDG YH++CL PPLK P GDW CP+C K
Sbjct: 30 NEPCVICGGKEEAERSVLCDGCDGAYHIFCLRPPLKTIPDGDWFCPQCQAK 80
BLAST of mRNA_E-fasciculatus_F_contig12033.1584.1 vs. uniprot
Match: A0A7S1CM23_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CM23_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 6.210e-14 Identity = 33/55 (60.00%), Postives = 38/55 (69.09%), Query Frame = 3
Query: 141 DDPCLVCGGLDNPDKALLCDGCDGCYHMYCLTPPLKRAPKGDWLCPKCAKKILDA 305
D C VCGGL P K LLCD CDG YH++CL PPLK P GDW CP C + +LD+
Sbjct: 416 DPGCRVCGGLHKPSKVLLCDHCDGEYHLFCLKPPLKAVPAGDWACPDCTE-LLDS 469
BLAST of mRNA_E-fasciculatus_F_contig12033.1584.1 vs. uniprot
Match: A0A673HEG1_9TELE ([Histone H3]-trimethyl-L-lysine(4) demethylase n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673HEG1_9TELE) HSP 1 Score: 81.3 bits (199), Expect = 1.470e-13 Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 3
Query: 150 CLVCGGLDNPDKALLCDGCDGCYHMYCLTPPLKRAPKGDWLCPKC 284
CLVCGG D+ D+ LLCDGCD YH +CL PPL PKGDW CPKC
Sbjct: 244 CLVCGGGDDEDRLLLCDGCDDSYHTFCLIPPLHDVPKGDWRCPKC 288
BLAST of mRNA_E-fasciculatus_F_contig12033.1584.1 vs. uniprot
Match: A0A673HDD9_9TELE ([Histone H3]-trimethyl-L-lysine(4) demethylase n=6 Tax=Cyprininae TaxID=2743694 RepID=A0A673HDD9_9TELE) HSP 1 Score: 81.3 bits (199), Expect = 1.480e-13 Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 3
Query: 150 CLVCGGLDNPDKALLCDGCDGCYHMYCLTPPLKRAPKGDWLCPKC 284
CLVCGG D+ D+ LLCDGCD YH +CL PPL PKGDW CPKC
Sbjct: 239 CLVCGGGDDEDRLLLCDGCDDSYHTFCLIPPLHDVPKGDWRCPKC 283
BLAST of mRNA_E-fasciculatus_F_contig12033.1584.1 vs. uniprot
Match: A0A673HE83_9TELE ([Histone H3]-trimethyl-L-lysine(4) demethylase n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673HE83_9TELE) HSP 1 Score: 81.3 bits (199), Expect = 1.480e-13 Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 3
Query: 150 CLVCGGLDNPDKALLCDGCDGCYHMYCLTPPLKRAPKGDWLCPKC 284
CLVCGG D+ D+ LLCDGCD YH +CL PPL PKGDW CPKC
Sbjct: 296 CLVCGGGDDEDRLLLCDGCDDSYHTFCLIPPLHDVPKGDWRCPKC 340
BLAST of mRNA_E-fasciculatus_F_contig12033.1584.1 vs. uniprot
Match: A0A673HE89_9TELE ([Histone H3]-trimethyl-L-lysine(4) demethylase n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673HE89_9TELE) HSP 1 Score: 81.3 bits (199), Expect = 1.480e-13 Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 3
Query: 150 CLVCGGLDNPDKALLCDGCDGCYHMYCLTPPLKRAPKGDWLCPKC 284
CLVCGG D+ D+ LLCDGCD YH +CL PPL PKGDW CPKC
Sbjct: 296 CLVCGGGDDEDRLLLCDGCDDSYHTFCLIPPLHDVPKGDWRCPKC 340
BLAST of mRNA_E-fasciculatus_F_contig12033.1584.1 vs. uniprot
Match: A0A673HE77_9TELE ([Histone H3]-trimethyl-L-lysine(4) demethylase n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673HE77_9TELE) HSP 1 Score: 81.3 bits (199), Expect = 1.480e-13 Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 3
Query: 150 CLVCGGLDNPDKALLCDGCDGCYHMYCLTPPLKRAPKGDWLCPKC 284
CLVCGG D+ D+ LLCDGCD YH +CL PPL PKGDW CPKC
Sbjct: 282 CLVCGGGDDEDRLLLCDGCDDSYHTFCLIPPLHDVPKGDWRCPKC 326
BLAST of mRNA_E-fasciculatus_F_contig12033.1584.1 vs. uniprot
Match: A0A835SC30_9CHLO (PHD-type domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835SC30_9CHLO) HSP 1 Score: 80.1 bits (196), Expect = 3.930e-13 Identity = 37/58 (63.79%), Postives = 38/58 (65.52%), Query Frame = 3
Query: 138 YDDP-CLVCGGLDNPDKALLCDGCDGCYHMYCLTPPLKRAPKGDWLCPKCAKKILDAS 308
YDD C VCGG D+PD LLCD CDG YHM CL PPLK P GDW CP C DAS
Sbjct: 1618 YDDTLCAVCGGGDDPDTILLCDTCDGGYHMGCLDPPLKDIPDGDWHCPNCT--AADAS 1673 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12033.1584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12033.1584.1 >prot_E-fasciculatus_F_contig12033.1584.1 ID=prot_E-fasciculatus_F_contig12033.1584.1|Name=mRNA_E-fasciculatus_F_contig12033.1584.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=169bp GGPRTRVGKGRGRRRRAKTTTKSPPRRSKKKRRGAPRMMVRRARKSTMIRback to top mRNA from alignment at E-fasciculatus_F_contig12033:1575..3953+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12033.1584.1 ID=mRNA_E-fasciculatus_F_contig12033.1584.1|Name=mRNA_E-fasciculatus_F_contig12033.1584.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2379bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12033:1575..3953+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12033:1575..3953+ >mRNA_E-fasciculatus_F_contig12033.1584.1 ID=mRNA_E-fasciculatus_F_contig12033.1584.1|Name=mRNA_E-fasciculatus_F_contig12033.1584.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1014bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12033:1575..3953+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |