mRNA_E-fasciculatus_F_contig1203.1581.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1203.1581.1
Unique NamemRNA_E-fasciculatus_F_contig1203.1581.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1203.1581.1 vs. uniprot
Match: D7FL08_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D7FL08_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 2.700e-43
Identity = 76/83 (91.57%), Postives = 79/83 (95.18%), Query Frame = 1 
Query:  124 QAYFEYGICLACGIPSVTMMGTVEDWKLLREKIERLLEFEVQDNPEGNVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKV 372
            QAYFEY +CLACGIPSVT+MGTVEDWKLLREKIER+LEFEV  NPEG VMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKV
Sbjct:  213 QAYFEYTMCLACGIPSVTLMGTVEDWKLLREKIERMLEFEVLGNPEGKVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKV 295
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BLAST of mRNA_E-fasciculatus_F_contig1203.1581.1 vs. uniprot
Match: D7FL09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL09_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 8.700e-43
Identity = 72/83 (86.75%), Postives = 78/83 (93.98%), Query Frame = 1 
Query:  124 QAYFEYGICLACGIPSVTMMGTVEDWKLLREKIERLLEFEVQDNPEGNVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKV 372
            QAYFE+ +CLAC IPSVT+MGTVEDW+LLREKIER+LEFEV DNPEG VME+WVGYLRKVCDGFVESAEHPDSAATVDFW KV
Sbjct:  110 QAYFEHTMCLACSIPSVTLMGTVEDWELLREKIERMLEFEVLDNPEGKVMEVWVGYLRKVCDGFVESAEHPDSAATVDFWAKV 192
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BLAST of mRNA_E-fasciculatus_F_contig1203.1581.1 vs. uniprot
Match: A0A6H5K056_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K056_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 1.760e-41
Identity = 72/84 (85.71%), Postives = 77/84 (91.67%), Query Frame = 1 
Query:  124 QAYFEYGICLACGIPSVTMMGTVEDWKLLREKIERLLEFEVQDNPEGNVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKVY 375
            Q YF Y +CL CGIPSV +MGTVEDWKLLREKIER+LEFEV DNPEG VMELWVGYLRKVCDGFVESAEHP+SAATVDFWDKV+
Sbjct:  177 QEYFNYEMCLRCGIPSVALMGTVEDWKLLREKIERMLEFEVLDNPEGKVMELWVGYLRKVCDGFVESAEHPNSAATVDFWDKVF 260
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BLAST of mRNA_E-fasciculatus_F_contig1203.1581.1 vs. uniprot
Match: A0A6H5KCJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ8_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 1.830e-40
Identity = 72/83 (86.75%), Postives = 75/83 (90.36%), Query Frame = 1 
Query:  124 QAYFEYGICLACGIPSVTMMGTVEDWKLLREKIERLLEFEVQDNPEGNVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKV 372
            Q  F Y +CL CGIPSV +MGTVEDWKLLREKIER+LEFEV DNPEG VMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKV
Sbjct:  191 QECFNYEMCLRCGIPSVALMGTVEDWKLLREKIERMLEFEVLDNPEGKVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKV 273
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BLAST of mRNA_E-fasciculatus_F_contig1203.1581.1 vs. uniprot
Match: D7G2F1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F1_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 3.030e-38
Identity = 67/90 (74.44%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:  124 QAYFEYGICLACGIPSVTMMGTVEDWKLLREKIERLLEFEVQDNPEGNVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKVYPPLGSG 393
            QAYF Y I   CG+PSVT+MGTV+DWKLLR K+ERLL+FEV DNPEG+VME+WVGYLRKVCDGFVESAEHPDS  T+ FWDKV   +G G
Sbjct:  149 QAYFSYEIHAECGLPSVTLMGTVQDWKLLRAKVERLLDFEVIDNPEGDVMEVWVGYLRKVCDGFVESAEHPDSTETLQFWDKVVSHIGGG 238
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BLAST of mRNA_E-fasciculatus_F_contig1203.1581.1 vs. uniprot
Match: D8LB67_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB67_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 2.540e-36
Identity = 68/92 (73.91%), Postives = 76/92 (82.61%), Query Frame = 1 
Query:  124 QAYFEYGICLACGIPSVTMMGTVEDWKLLREKIERLLEFEVQDNPEGNVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKV--YPPLGSG 393
            QAYFEY +   CGIPSVT+MGTV DWKLLREKIERLLEFEV  NP+G VM+ WVGYLRKVCDGFVESAEHP S  T++FWD+V  + P GSG
Sbjct:  110 QAYFEYTMMYRCGIPSVTLMGTVGDWKLLREKIERLLEFEVDGNPQGKVMQTWVGYLRKVCDGFVESAEHPGSPETLEFWDRVLTHEPEGSG 201
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BLAST of mRNA_E-fasciculatus_F_contig1203.1581.1 vs. uniprot
Match: D7G2F2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F2_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 3.320e-36
Identity = 67/90 (74.44%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:  124 QAYFEYGICLACGIPSVTMMGTVEDWKLLREKIERLLEFEVQDNPEGNVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKVYPPLGSG 393
            QAYF Y I   CG+PSVT+MGTV+DWKLLR K+ERLL+FEV DNPEG+VME+WVGYLRKVCDGFVESAEHPDS  T+ FWDKV   +G G
Sbjct:  334 QAYFSYEIHAECGLPSVTLMGTVQDWKLLRAKVERLLDFEVIDNPEGDVMEVWVGYLRKVCDGFVESAEHPDSTETLQFWDKVVSHIGGG 423
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BLAST of mRNA_E-fasciculatus_F_contig1203.1581.1 vs. uniprot
Match: A0A6H5L0H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H3_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 3.930e-36
Identity = 66/90 (73.33%), Postives = 77/90 (85.56%), Query Frame = 1 
Query:  124 QAYFEYGICLACGIPSVTMMGTVEDWKLLREKIERLLEFEVQDNPEGNVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKVYPPLGSG 393
            QAYF Y I L CG+PSVT+MGTV+DWKLLR K+ERLL+FEV+DNPE +VME+WVGYLR+VCDGFVESAEHPDS  T+  WDKV P +G G
Sbjct:  283 QAYFSYEIHLECGLPSVTLMGTVQDWKLLRAKVERLLDFEVKDNPEEDVMEVWVGYLREVCDGFVESAEHPDSTETLQVWDKVVPHIGGG 372
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BLAST of mRNA_E-fasciculatus_F_contig1203.1581.1 vs. uniprot
Match: A0A6H5KQX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX2_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 1.520e-33
Identity = 61/83 (73.49%), Postives = 70/83 (84.34%), Query Frame = 1 
Query:  124 QAYFEYGICLACGIPSVTMMGTVEDWKLLREKIERLLEFEVQDNPEGNVMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKV 372
            Q YFE+ +   CGIPSVT+ GTV DWKLLREK+ERLLEFEV  NPEG VM++WVGYLRKVCDGFVESAEHP S  T++FWD+V
Sbjct:  128 QNYFEFRMRRGCGIPSVTLRGTVRDWKLLREKVERLLEFEVDGNPEGEVMQIWVGYLRKVCDGFVESAEHPGSPETLEFWDRV 210
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1203.1581.1 vs. uniprot
Match: D8LQ89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ89_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 1.690e-32
Identity = 61/84 (72.62%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:  124 QAYFEYGICLACGIPSVTMMGTVEDWKLLREKIERLLEFEVQDNPEGN-VMELWVGYLRKVCDGFVESAEHPDSAATVDFWDKV 372
            Q YFEY     CGIPSVT+ GTV DWKLLREKIERLLEFEV  NPE + VM++WVGYLRKVCDGFV+SAEHP S  T++FWD+V
Sbjct:  110 QGYFEYSFMCGCGIPSVTLRGTVGDWKLLREKIERLLEFEVDGNPEEDKVMQIWVGYLRKVCDGFVKSAEHPGSPETLEFWDRV 193
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1203.1581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL08_ECTSI2.700e-4391.57Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2... [more]
D7FL09_ECTSI8.700e-4386.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K056_9PHAE1.760e-4185.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCJ8_9PHAE1.830e-4086.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2F1_ECTSI3.030e-3874.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LB67_ECTSI2.540e-3673.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2F2_ECTSI3.320e-3674.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0H3_9PHAE3.930e-3673.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQX2_9PHAE1.520e-3373.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ89_ECTSI1.690e-3272.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1203contigE-fasciculatus_F_contig1203:28..1199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.2
Seed ortholog evalue5.3e-39
Seed eggNOG ortholog2880.D7FL08
EggNOG free text desc.Domain of unknown function (DUF4419)
EggNOG OGs29GQM@1,2RPX4@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1173
Cds size399
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927711.844415-CDS-E-fasciculatus_F_contig1203:27..4261622927711.844415-CDS-E-fasciculatus_F_contig1203:27..426Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1203 28..426 +
1695995661.7348654-CDS-E-fasciculatus_F_contig1203:27..4261695995661.7348654-CDS-E-fasciculatus_F_contig1203:27..426Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1203 28..426 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927711.8580809-UTR-E-fasciculatus_F_contig1203:426..11991622927711.8580809-UTR-E-fasciculatus_F_contig1203:426..1199Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1203 427..1199 +
1695995661.7484035-UTR-E-fasciculatus_F_contig1203:426..11991695995661.7484035-UTR-E-fasciculatus_F_contig1203:426..1199Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1203 427..1199 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1203.1581.1prot_E-fasciculatus_F_contig1203.1581.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1203 28..426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1203.1581.1

>prot_E-fasciculatus_F_contig1203.1581.1 ID=prot_E-fasciculatus_F_contig1203.1581.1|Name=mRNA_E-fasciculatus_F_contig1203.1581.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=133bp
SVRRNQEEHQVPRAGRLVPSWVLYYYGDRRGVRGGNSDGEPQAYFEYGIC
LACGIPSVTMMGTVEDWKLLREKIERLLEFEVQDNPEGNVMELWVGYLRK
VCDGFVESAEHPDSAATVDFWDKVYPPLGSGF*
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mRNA from alignment at E-fasciculatus_F_contig1203:28..1199+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1203.1581.1 ID=mRNA_E-fasciculatus_F_contig1203.1581.1|Name=mRNA_E-fasciculatus_F_contig1203.1581.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1172bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1203:28..1199+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCTGTTAGGAGAAATCAGGAAGAACATCAAGTCCCCCGAGCTGGCCGATT
GGTTCCGTCCTGGGTTCTCTACTACTACGGAGACAGACGAGGTGTGCGCG
GCGGCAACAGCGATGGCGAGCCTCAAGCGTACTTCGAGTATGGAATCTGC
CTGGCATGCGGCATTCCGTCGGTTACCATGATGGGCACGGTCGAGGACTG
GAAGCTGCTGCGGGAGAAGATCGAGCGACTGCTTGAGTTCGAGGTGCAGG
ACAACCCGGAGGGCAACGTTATGGAGCTGTGGGTGGGGTACCTGAGGAAG
GTGTGCGACGGGTTCGTGGAGTCAGCGGAGCACCCGGACAGCGCGGCGAC
GGTCGACTTCTGGGACAAGGTATATCCGCCTTTAGGGTCTGGTTTTTGAC
GCTTAATAGCTACGCCTGAATACAAGTAGAGGCCCTGCAAAACGTTTGTG
TGGACGGGGTTACCCCGGGTGGAAGATGGTGAATGATCAACAACGAAAAA
ATACGATGAGACTTTTGCTACCCGGAAAAGCGAGATTTTGGTATTGTGTG
CAGCAAGCAATAAATATTGGCAACTCGGATTGGTTTTTGCTGAATCGCAG
TATTTTCGCACCCCCGATGATGAGCTGACCTCATGATTGCGTTGCCCCTG
ACTGGACCGCATGTGGCACACTGGCCGTGTGGCATCCATACGCATCGGTG
TCCCACAGTTTCGGTAGTTTCTATCATCTGCCCATGGGCAATATATTCTG
CCCGTGGGCGTGCTGACATATTGTTTACTGCTCCCGTGTGGTGCACATGG
TCTATGGCTTCACTAAATAGCTTGGTCACCACGTCATCTCGCAGCAGTGA
TTCCGTCGCATTTGGATGTTGATGAACCTCCATTCGCATTTGGGTGTTGC
AAAAGTACGTTCAAACGACACAAGTCTTTTTTGGCCAAAACCCAATAAGG
CCCATTCAATTTGGGTCCTCAATTTAGGTGCGCACCTGTTACCGATAGGC
AGGCCCTTCACAGCAGATTACACTGGCGGGAAGAAACGCTATTTTACTGC
TGGAGAGGTCGATGTGCCGCGATAAAACGATGTGCTTTTTGTGTCAGACT
GCTCCTTCCTGAGCCCCCCAGAGACCCTCAACTAAATGGAGTTGAAATCC
TTGGCTTCAAACGCAACTCACA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1203:28..1199+

>mRNA_E-fasciculatus_F_contig1203.1581.1 ID=mRNA_E-fasciculatus_F_contig1203.1581.1|Name=mRNA_E-fasciculatus_F_contig1203.1581.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=798bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1203:28..1199+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCTGTTAGGAGAAATCAGGAAGAACATCAAGTCCCCCGAGCTGGCCGATT
GGTTCCGTCCTGGGTTCTCTACTACTACGGAGACAGACGAGGTGTGCGCG
GCGGCAACAGCGATGGCGAGCCTCAAGCGTACTTCGAGTATGGAATCTGC
CTGGCATGCGGCATTCCGTCGGTTACCATGATGGGCACGGTCGAGGACTG
GAAGCTGCTGCGGGAGAAGATCGAGCGACTGCTTGAGTTCGAGGTGCAGG
ACAACCCGGAGGGCAACGTTATGGAGCTGTGGGTGGGGTACCTGAGGAAG
GTGTGCGACGGGTTCGTGGAGTCAGCGGAGCACCCGGACAGCGCGGCGAC
GGTCGACTTCTGGGACAAGGTATATCCGCCTTTAGGGTCTGGTTTTTGAT
CTGTTAGGAGAAATCAGGAAGAACATCAAGTCCCCCGAGCTGGCCGATTG
GTTCCGTCCTGGGTTCTCTACTACTACGGAGACAGACGAGGTGTGCGCGG
CGGCAACAGCGATGGCGAGCCTCAAGCGTACTTCGAGTATGGAATCTGCC
TGGCATGCGGCATTCCGTCGGTTACCATGATGGGCACGGTCGAGGACTGG
AAGCTGCTGCGGGAGAAGATCGAGCGACTGCTTGAGTTCGAGGTGCAGGA
CAACCCGGAGGGCAACGTTATGGAGCTGTGGGTGGGGTACCTGAGGAAGG
TGTGCGACGGGTTCGTGGAGTCAGCGGAGCACCCGGACAGCGCGGCGACG
GTCGACTTCTGGGACAAGGTATATCCGCCTTTAGGGTCTGGTTTTTGA
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