mRNA_E-fasciculatus_F_contig1203.1582.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1203.1582.1
Unique NamemRNA_E-fasciculatus_F_contig1203.1582.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1203.1582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1203contigE-fasciculatus_F_contig1203:17120..18990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1562
Cds size1011
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1203.1582.1prot_E-fasciculatus_F_contig1203.1582.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1203 17669..18990 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927711.783766-UTR-E-fasciculatus_F_contig1203:17119..176681622927711.783766-UTR-E-fasciculatus_F_contig1203:17119..17668Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1203 17120..17668 -
1695995661.703956-UTR-E-fasciculatus_F_contig1203:17119..176681695995661.703956-UTR-E-fasciculatus_F_contig1203:17119..17668Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1203 17120..17668 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927711.7982597-CDS-E-fasciculatus_F_contig1203:17668..184091622927711.7982597-CDS-E-fasciculatus_F_contig1203:17668..18409Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1203 17669..18409 -
1695995661.7119017-CDS-E-fasciculatus_F_contig1203:17668..184091695995661.7119017-CDS-E-fasciculatus_F_contig1203:17668..18409Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1203 17669..18409 -
1622927711.8110914-CDS-E-fasciculatus_F_contig1203:18720..189901622927711.8110914-CDS-E-fasciculatus_F_contig1203:18720..18990Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1203 18721..18990 -
1695995661.7198377-CDS-E-fasciculatus_F_contig1203:18720..189901695995661.7198377-CDS-E-fasciculatus_F_contig1203:18720..18990Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1203 18721..18990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1203.1582.1

>prot_E-fasciculatus_F_contig1203.1582.1 ID=prot_E-fasciculatus_F_contig1203.1582.1|Name=mRNA_E-fasciculatus_F_contig1203.1582.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=337bp
YPNLLVSVTTVADATGPTVVTGAGAGTLSPPLSEDRERGGSGGDDWKAGL
KQAKAPAAAPATVHGGDVAPAVTTGSASQRKGGESAAFGQGEQSTRPTVR
EAATPAAVEVGVLTTPATALRPSRRGTGASSAATAARRGSDAGVGGGDGD
GRGAACSLSSSLGTASGPPASAVGTGGFSSVGTARVPSPANTGDSGALAP
AGVGQHTLAPTSAAFPARTNGAAAAPTPAASAGYATVGGEATADSRRAAA
APTAAVVSDATDASRPAAFAAGSSWPVRQEIDTVVGPERDELLTQIPQEE
SVGHGGWEDDEEEQGQRLMMSFAMPPHLTAGDAAWK*
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mRNA from alignment at E-fasciculatus_F_contig1203:17120..18990-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1203.1582.1 ID=mRNA_E-fasciculatus_F_contig1203.1582.1|Name=mRNA_E-fasciculatus_F_contig1203.1582.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1871bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1203:17120..18990- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TATCCTAACCTTCTGGTGAGCGTTACGACCGTTGCCGACGCGACGGGCCC
TACGGTGGTGACCGGCGCTGGGGCCGGAACTCTTTCTCCCCCCCTGTCCG
AGGATCGAGAGCGCGGCGGCAGCGGCGGGGATGATTGGAAGGCTGGCTTG
AAGCAAGCCAAGGCTCCTGCTGCCGCTCCTGCCACAGTGCACGGTGGTGA
CGTTGCTCCAGCTGTTACCACGGGTTCGGCTTCACAGCGGAAAGGCGGAG
AGAGTGCGGCGTTTGGTCAGGTATGTAATGGTAGCCTTTGGGGAAGCCTG
ACGGAAAACACTGATGCATCATGTTTGCCTCCGGCTTTTGTGGAACCAAA
CGAAAGAATGTCGGCATCAATAACCCACCCGTTCGCCAAACATGTTGTGC
GTGTCAGTATCACGTTAGGAGACTCTTCCGGCTTTTGCTTTGGTAAGCTG
ATAACGGGTATGTTTGCCGTGCTGTGCTGTGACTCGGACGGCTACGCAGA
AACGATGGTTGCCACTTATCATTGTGGGTCTTTGACGGAACCTGACCACG
ACCAATGTTACGTTTGCCGGTGGATGTTTAGGGAGAGCAATCTACGCGAC
CCACCGTGAGGGAAGCAGCGACGCCGGCGGCGGTGGAGGTGGGAGTGTTG
ACGACGCCTGCGACGGCACTGAGACCTTCAAGACGGGGGACTGGCGCTTC
TTCAGCCGCTACCGCTGCTCGACGTGGTAGCGATGCTGGTGTTGGCGGTG
GCGATGGGGACGGTCGTGGTGCTGCTTGCTCTTTGTCGTCGAGTTTAGGG
ACAGCCTCCGGTCCGCCAGCAAGTGCAGTGGGTACGGGGGGCTTCAGCAG
CGTGGGAACGGCACGGGTTCCCTCCCCCGCCAACACGGGAGATTCTGGAG
CTCTGGCTCCGGCGGGAGTGGGGCAGCACACGTTGGCGCCGACATCAGCA
GCGTTTCCGGCAAGGACAAACGGGGCAGCTGCCGCCCCTACCCCTGCTGC
TAGTGCCGGATATGCTACAGTTGGCGGCGAAGCTACTGCGGACAGCAGGC
GAGCTGCTGCTGCACCCACTGCTGCTGTTGTATCCGACGCGACTGACGCC
TCTCGCCCGGCGGCGTTTGCTGCTGGTTCTTCTTGGCCGGTCCGGCAGGA
GATCGACACGGTGGTTGGCCCGGAGCGTGACGAGTTGTTGACACAAATAC
CGCAGGAGGAGTCTGTCGGACACGGCGGTTGGGAAGACGACGAGGAGGAG
CAAGGGCAGAGGCTCATGATGTCCTTTGCCATGCCACCCCACTTAACAGC
TGGAGATGCTGCGTGGAAATGACGAGGAGGGTGGCATTTGTCAATATGCC
ATGAGCACAGGAAGGTGGGGGATGACCCCAATAGGTTCACCATATCCGGG
GTAGGGGGGGTGAGCTGCGGGTACGCGGTGAGGGTAGGTAGCCGCTGGTA
TAAGGTGCATCCCTCGTTGCCTGTGCGTGCATGCAGGGGAAGCAGCTCTT
CACCCCTCTGAGACATTTTACAGGAGTTTGGTCGGCTTCGAAATTGCAAC
CAAGATGCGGCGTTCTTGGTGGACATTTGAAGGCGATCAAACAACGTGTC
CATGCGTGCAACTGCCGCACCAAGGGGCAACGGGAGGTCAGGCAGTTGAC
GTAGGGGCGGGGTGAATGGCCTAGAGAGAGGGGCCGAGGGGGACAAAACA
GCATGGAGGGCATGGAGAACGGTGGTGCCATCGATGAATACGAAGCGGCA
CGTTGGATGTCACCAGAGTCTTCTGCTCCCCTGCCTGGTTGATGTTGTCG
CGGGCATTAGAAAAGCGGCGAAAATCAAGTCATTCTAGCTGCCGGCCGAC
TACTACTGTAAACAAGCTGGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1203:17120..18990-

>mRNA_E-fasciculatus_F_contig1203.1582.1 ID=mRNA_E-fasciculatus_F_contig1203.1582.1|Name=mRNA_E-fasciculatus_F_contig1203.1582.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2022bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1203:17120..18990- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TATCCTAACCTTCTGGTGAGCGTTACGACCGTTGCCGACGCGACGGGCCC
TACGGTGGTGACCGGCGCTGGGGCCGGAACTCTTTCTCCCCCCCTGTCCG
AGGATCGAGAGCGCGGCGGCAGCGGCGGGGATGATTGGAAGGCTGGCTTG
AAGCAAGCCAAGGCTCCTGCTGCCGCTCCTGCCACAGTGCACGGTGGTGA
CGTTGCTCCAGCTGTTACCACGGGTTCGGCTTCACAGCGGAAAGGCGGAG
AGAGTGCGGCGTTTGGTCAGTATCCTAACCTTCTGGTGAGCGTTACGACC
GTTGCCGACGCGACGGGCCCTACGGTGGTGACCGGCGCTGGGGCCGGAAC
TCTTTCTCCCCCCCTGTCCGAGGATCGAGAGCGCGGCGGCAGCGGCGGGG
ATGATTGGAAGGCTGGCTTGAAGCAAGCCAAGGCTCCTGCTGCCGCTCCT
GCCACAGTGCACGGTGGTGACGTTGCTCCAGCTGTTACCACGGGTTCGGC
TTCACAGCGGAAAGGCGGAGAGAGTGCGGCGTTTGGTCAGGGAGAGCAAT
CTACGCGACCCACCGTGAGGGAAGCAGCGACGCCGGCGGCGGTGGAGGTG
GGAGTGTTGACGACGCCTGCGACGGCACTGAGACCTTCAAGACGGGGGAC
TGGCGCTTCTTCAGCCGCTACCGCTGCTCGACGTGGTAGCGATGCTGGTG
TTGGCGGTGGCGATGGGGACGGTCGTGGTGCTGCTTGCTCTTTGTCGTCG
AGTTTAGGGACAGCCTCCGGTCCGCCAGCAAGTGCAGTGGGTACGGGGGG
CTTCAGCAGCGTGGGAACGGCACGGGTTCCCTCCCCCGCCAACACGGGAG
ATTCTGGAGCTCTGGCTCCGGCGGGAGTGGGGCAGCACACGTTGGCGCCG
ACATCAGCAGCGTTTCCGGCAAGGACAAACGGGGCAGCTGCCGCCCCTAC
CCCTGCTGCTAGTGCCGGATATGCTACAGTTGGCGGCGAAGCTACTGCGG
ACAGCAGGCGAGCTGCTGCTGCACCCACTGCTGCTGTTGTATCCGACGCG
ACTGACGCCTCTCGCCCGGCGGCGTTTGCTGCTGGTTCTTCTTGGCCGGT
CCGGCAGGAGATCGACACGGTGGTTGGCCCGGAGCGTGACGAGTTGTTGA
CACAAATACCGCAGGAGGAGTCTGTCGGACACGGCGGTTGGGAAGACGAC
GAGGAGGAGCAAGGGCAGAGGCTCATGATGTCCTTTGCCATGCCACCCCA
CTTAACAGCTGGAGATGCTGCGTGGAAATGAGGAGAGCAATCTACGCGAC
CCACCGTGAGGGAAGCAGCGACGCCGGCGGCGGTGGAGGTGGGAGTGTTG
ACGACGCCTGCGACGGCACTGAGACCTTCAAGACGGGGGACTGGCGCTTC
TTCAGCCGCTACCGCTGCTCGACGTGGTAGCGATGCTGGTGTTGGCGGTG
GCGATGGGGACGGTCGTGGTGCTGCTTGCTCTTTGTCGTCGAGTTTAGGG
ACAGCCTCCGGTCCGCCAGCAAGTGCAGTGGGTACGGGGGGCTTCAGCAG
CGTGGGAACGGCACGGGTTCCCTCCCCCGCCAACACGGGAGATTCTGGAG
CTCTGGCTCCGGCGGGAGTGGGGCAGCACACGTTGGCGCCGACATCAGCA
GCGTTTCCGGCAAGGACAAACGGGGCAGCTGCCGCCCCTACCCCTGCTGC
TAGTGCCGGATATGCTACAGTTGGCGGCGAAGCTACTGCGGACAGCAGGC
GAGCTGCTGCTGCACCCACTGCTGCTGTTGTATCCGACGCGACTGACGCC
TCTCGCCCGGCGGCGTTTGCTGCTGGTTCTTCTTGGCCGGTCCGGCAGGA
GATCGACACGGTGGTTGGCCCGGAGCGTGACGAGTTGTTGACACAAATAC
CGCAGGAGGAGTCTGTCGGACACGGCGGTTGGGAAGACGACGAGGAGGAG
CAAGGGCAGAGGCTCATGATGTCCTTTGCCATGCCACCCCACTTAACAGC
TGGAGATGCTGCGTGGAAATGA
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