prot_E-fasciculatus_F_contig12028.1580.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig12028.1580.1
Unique Nameprot_E-fasciculatus_F_contig12028.1580.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length130
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12028.1580.1 vs. uniprot
Match: D7FNK0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNK0_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 1.350e-53
Identity = 110/134 (82.09%), Postives = 115/134 (85.82%), Query Frame = 0 
Query:    1 MQSDGVDPDRDSYFFVMSACSKRGEAKTALALLSEMKA----GRQXXXXXXXXXXXXXXXXXXXXDGAPVPDLLLYAVVMKACAWGKRWQQAVRLLDDMSGAGVSPNVVVLNTALSACAKCGQVSRATQLLEEM 130
            MQSDGVDPDRDSYFFVMSACSKRGEAKTALALL+EMKA       XXXXXXXXXX          DGAP PDLLLYAVVMKACAWGKRWQQA+RLLDDMS AGV+PNVVV+NTALSACAKCGQVSRATQLL+EM
Sbjct:  192 MQSDGVDPDRDSYFFVMSACSKRGEAKTALALLAEMKARXXXXXXXXXXXXXXXXPGGYGEVEDEDGAPAPDLLLYAVVMKACAWGKRWQQAIRLLDDMSAAGVAPNVVVVNTALSACAKCGQVSRATQLLQEM 325
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BLAST of mRNA_E-fasciculatus_F_contig12028.1580.1 vs. uniprot
Match: A0A833QSJ3_9POAL (Pentatricopeptide repeat-containing protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QSJ3_9POAL)

HSP 1 Score: 57.4 bits (137), Expect = 5.420e-7
Identity = 38/132 (28.79%), Postives = 57/132 (43.18%), Query Frame = 0 
Query:    1 MQSDGVDPDRDSYFFVMSACSKRGEAKTALALLSEMKA--GRQXXXXXXXXXXXXXXXXXXXXDGAPVPDLLLYAVVMKACAWGKRWQQAVRLLDDMSGAGVSPNVVVLNTALSACAKCGQVSRATQLLEEM 130
            MQ+ GV+ D  SY  ++ AC        AL +  E+KA  GR+                          D   Y  ++K  +    W+  + + +DMS AGV PN++  +  LS CA CG    A +L +EM
Sbjct:  305 MQALGVEADIASYNILLKACCNVRRVDLALKIYEELKAVDGRESLKL----------------------DAYTYTSMIKVLSGEGMWETVLTIKEDMSSAGVRPNLITWSLILSTCANCGLADHALKLFDEM 414
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12028.1580.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNK0_ECTSI1.350e-5382.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A833QSJ3_9POAL5.420e-728.79Pentatricopeptide repeat-containing protein n=1 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 99..130
e-value: 1.4E-6
score: 27.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 72..104
e-value: 1.9E-4
score: 19.4
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 16..37
e-value: 0.024
score: 14.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 7.695
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 68..102
score: 9.964
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 103..130
score: 9.328
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..130
e-value: 1.2E-26
score: 96.0
NoneNo IPR availablePANTHERPTHR47581FAMILY NOT NAMEDcoord: 1..46
coord: 67..130

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12028contigE-fasciculatus_F_contig12028:684..1464 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12028.1580.1mRNA_E-fasciculatus_F_contig12028.1580.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig12028 666..1464 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig12028.1580.1 ID=prot_E-fasciculatus_F_contig12028.1580.1|Name=mRNA_E-fasciculatus_F_contig12028.1580.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=130bp
MQSDGVDPDRDSYFFVMSACSKRGEAKTALALLSEMKAGRQQQQQQRAGG
GGGGSGDEEDEDGAPVPDLLLYAVVMKACAWGKRWQQAVRLLDDMSGAGV
SPNVVVLNTALSACAKCGQVSRATQLLEEM
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat