mRNA_E-fasciculatus_F_contig12028.1580.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12028.1580.1
Unique NamemRNA_E-fasciculatus_F_contig12028.1580.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12028.1580.1 vs. uniprot
Match: D7FNK0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNK0_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 8.170e-58
Identity = 116/140 (82.86%), Postives = 121/140 (86.43%), Query Frame = 1 
Query:    1 LSVFREMQSDGVDPDRDSYFFVMSACSKRGEAKTALALLSEMKA----GRQXXXXXXXXXXXXXXXXXXXXDGAPVPDLLLYAVVMKACAWGKRWQQAVRLLDDMSGAGVSPNVVVLNTALSACAKCGQVSRATQLLEEM 408
            LSVFREMQSDGVDPDRDSYFFVMSACSKRGEAKTALALL+EMKA       XXXXXXXXXX          DGAP PDLLLYAVVMKACAWGKRWQQA+RLLDDMS AGV+PNVVV+NTALSACAKCGQVSRATQLL+EM
Sbjct:  186 LSVFREMQSDGVDPDRDSYFFVMSACSKRGEAKTALALLAEMKARXXXXXXXXXXXXXXXXPGGYGEVEDEDGAPAPDLLLYAVVMKACAWGKRWQQAIRLLDDMSAAGVAPNVVVVNTALSACAKCGQVSRATQLLQEM 325
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BLAST of mRNA_E-fasciculatus_F_contig12028.1580.1 vs. uniprot
Match: A0A833QSJ3_9POAL (Pentatricopeptide repeat-containing protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QSJ3_9POAL)

HSP 1 Score: 65.1 bits (157), Expect = 1.340e-9
Identity = 41/138 (29.71%), Postives = 61/138 (44.20%), Query Frame = 1 
Query:    1 LSVFREMQSDGVDPDRDSYFFVMSACSKRGEAKTALALLSEMKA--GRQXXXXXXXXXXXXXXXXXXXXDGAPVPDLLLYAVVMKACAWGKRWQQAVRLLDDMSGAGVSPNVVVLNTALSACAKCGQVSRATQLLEEM 408
            L V+R MQ+ GV+ D  SY  ++ AC        AL +  E+KA  GR+                          D   Y  ++K  +    W+  + + +DMS AGV PN++  +  LS CA CG    A +L +EM
Sbjct:  299 LGVYRRMQALGVEADIASYNILLKACCNVRRVDLALKIYEELKAVDGRESLKL----------------------DAYTYTSMIKVLSGEGMWETVLTIKEDMSSAGVRPNLITWSLILSTCANCGLADHALKLFDEM 414
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BLAST of mRNA_E-fasciculatus_F_contig12028.1580.1 vs. uniprot
Match: A0A5P1FF00_ASPOF (DYW_deaminase domain-containing protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1FF00_ASPOF)

HSP 1 Score: 52.4 bits (124), Expect = 3.360e-5
Identity = 39/143 (27.27%), Postives = 61/143 (42.66%), Query Frame = 1 
Query:    1 LSVFREMQSDGVDPDRDSYFFVMSACSKRGEAKTALALLSEMKAGRQXXXXXXXXXXXXXXXXXXXXDGA-------PVPDLLLYAVVMKACAWGKRWQQAVRLLDDMSGAGVSPNVVVLNTALSACAKCGQVSRATQLLEEM 408
            +S+FREMQ  GV PD+ +   V+SAC+  G       + S ++ GR                     DGA       P   ++ +  V+   A   R ++AV + + M  AGV+P+ V     L+AC+  G V       + M
Sbjct:   99 VSLFREMQRMGVQPDQVTVLAVLSACADLGALDLTRWVGSFIERGRVAKSVPVCNALLDALAKCGDVDGAVAFFERMPEKSIVSWTSVIDGLAAHGRGREAVSVFEAMKAAGVAPDDVAFIGVLTACSHAGLVHEGRAYFDSM 241
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12028.1580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FNK0_ECTSI8.170e-5882.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A833QSJ3_9POAL1.340e-929.71Pentatricopeptide repeat-containing protein n=1 Ta... [more]
A0A5P1FF00_ASPOF3.360e-527.27DYW_deaminase domain-containing protein n=1 Tax=As... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12028contigE-fasciculatus_F_contig12028:666..1464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.2
Seed ortholog evalue1.5e-46
Seed eggNOG ortholog2880.D7FNK0
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size408
Cds size390
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12028.1580.1prot_E-fasciculatus_F_contig12028.1580.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12028 684..1464 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927711.6577163-UTR-E-fasciculatus_F_contig12028:665..6831622927711.6577163-UTR-E-fasciculatus_F_contig12028:665..683Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12028 666..683 +
1695995661.6707687-UTR-E-fasciculatus_F_contig12028:665..6831695995661.6707687-UTR-E-fasciculatus_F_contig12028:665..683Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12028 666..683 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927711.6744876-CDS-E-fasciculatus_F_contig12028:683..9811622927711.6744876-CDS-E-fasciculatus_F_contig12028:683..981Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12028 684..981 +
1695995661.6847565-CDS-E-fasciculatus_F_contig12028:683..9811695995661.6847565-CDS-E-fasciculatus_F_contig12028:683..981Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12028 684..981 +
1622927711.6858518-CDS-E-fasciculatus_F_contig12028:1372..14641622927711.6858518-CDS-E-fasciculatus_F_contig12028:1372..1464Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12028 1373..1464 +
1695995661.6937115-CDS-E-fasciculatus_F_contig12028:1372..14641695995661.6937115-CDS-E-fasciculatus_F_contig12028:1372..1464Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12028 1373..1464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12028.1580.1

>prot_E-fasciculatus_F_contig12028.1580.1 ID=prot_E-fasciculatus_F_contig12028.1580.1|Name=mRNA_E-fasciculatus_F_contig12028.1580.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=130bp
MQSDGVDPDRDSYFFVMSACSKRGEAKTALALLSEMKAGRQQQQQQRAGG
GGGGSGDEEDEDGAPVPDLLLYAVVMKACAWGKRWQQAVRLLDDMSGAGV
SPNVVVLNTALSACAKCGQVSRATQLLEEM
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mRNA from alignment at E-fasciculatus_F_contig12028:666..1464+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12028.1580.1 ID=mRNA_E-fasciculatus_F_contig12028.1580.1|Name=mRNA_E-fasciculatus_F_contig12028.1580.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=799bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12028:666..1464+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGAGCGTGTTCCGAGAGATGCAGTCGGACGGGGTGGATCCCGATCGCGA
CTCGTACTTTTTCGTGATGAGCGCCTGCTCGAAGCGAGGCGAGGCCAAGA
CCGCGCTAGCCCTCCTCTCGGAAATGAAAGCGGGGCGGCAGCAGCAGCAG
CAGCAACGGGCTGGGGGGGGGGGCGGTGGCTCCGGCGACGAAGAAGACGA
GGACGGGGCACCCGTGCCAGACCTGCTCCTCTACGCCGTCGTGATGAAGG
CCTGCGCCTGGGGAAAGCGCTGGCAGCAAGCGGTCCGTCTGCTGGACGAC
ATGTCCGGCGCGGGCGGTGAGTGTGGAAACCGAGGACACCCGCCGTAAGA
GGTTGAATTGCACGCGGAAAGAACGTCCTGTAGGAGTTTGGTGTTTTTTT
TTCCATTTTAGCGTAGGAATCTTGTTCGCAATGTAGAGATTTTGGGTTCA
GAAAATCCTACGGCTTCTCGTTGCTGTGCTCCTGCTACAACTACAAGGAC
CAACACGTGAACACTACCGTCGTTTCCTGTGCTATCTTGCGCCCGGTCAA
CCGTGCTCGATGTCTTCGAAGCCAACAACCGCCGCCGTTGCGTACGTGCG
GTTGCGGCTGCTCCTGAAGAGCCCACCCGCCACCCCCCGCTGACCCATCC
CCACTGCAACACATGCTTGCTCTGTCGCGACTACGAACCCACCCCAACCA
CCCGAAGTGTCGCCTAACGTGGTGGTGTTGAACACGGCTCTGTCGGCGTG
CGCCAAGTGTGGCCAGGTTTCTCGGGCCACGCAGCTCCTCGAAGAGATG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12028:666..1464+

>mRNA_E-fasciculatus_F_contig12028.1580.1 ID=mRNA_E-fasciculatus_F_contig12028.1580.1|Name=mRNA_E-fasciculatus_F_contig12028.1580.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=780bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12028:666..1464+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAGTCGGACGGGGTGGATCCCGATCGCGACTCGTACTTTTTCGTGAT
GAGCGCCTGCTCGAAGCGAGGCGAGGCCAAGACCGCGCTAGCCCTCCTCT
CGGAAATGAAAGCGGGGCGGCAGCAGCAGCAGCAGCAACGGGCTGGGGGG
GGGGGCGGTGGCTCCGGCGACGAAGAAGACGAGGACGGGGCACCCGTGCC
AGACCTGCTCCTCTACGCCGTCGTGATGAAGGCCTGCGCCTGGGGAAAGC
GCTGGCAGCAAGCGGTCCGTCTGCTGGACGACATGTCCGGCGCGGGCGAT
GCAGTCGGACGGGGTGGATCCCGATCGCGACTCGTACTTTTTCGTGATGA
GCGCCTGCTCGAAGCGAGGCGAGGCCAAGACCGCGCTAGCCCTCCTCTCG
GAAATGAAAGCGGGGCGGCAGCAGCAGCAGCAGCAACGGGCTGGGGGGGG
GGGCGGTGGCTCCGGCGACGAAGAAGACGAGGACGGGGCACCCGTGCCAG
ACCTGCTCCTCTACGCCGTCGTGATGAAGGCCTGCGCCTGGGGAAAGCGC
TGGCAGCAAGCGGTCCGTCTGCTGGACGACATGTCCGGCGCGGGCGTGTC
GCCTAACGTGGTGGTGTTGAACACGGCTCTGTCGGCGTGCGCCAAGTGTG
GCCAGGTTTCTCGGGCCACGCAGCTCCTCGAAGAGATGTGTCGCCTAACG
TGGTGGTGTTGAACACGGCTCTGTCGGCGTGCGCCAAGTGTGGCCAGGTT
TCTCGGGCCACGCAGCTCCTCGAAGAGATG
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