mRNA_E-fasciculatus_F_contig12025.1579.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12025.1579.1
Unique NamemRNA_E-fasciculatus_F_contig12025.1579.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12025.1579.1 vs. uniprot
Match: A0A6H5JIB4_9PHAE (Importin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIB4_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 3.770e-51
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 1
Query:   79 GEVVVPYYPELLQALHPLFALTSKGTEGGVVDNAAAAVARMIMAAPAALPMDQVLPVFLSALPLKSDRSENEAVYTCLLGLIHLRHPEALRLLDSIMS 372
            GEV+VPYYPELLQALHPLFALTSKGTEGGVVDNAAAAVARMIMAAPAALPMDQVLPVFLSALPLKSDRSENE VYTCLLGLIHLRHPEALRLLD IM+
Sbjct:  938 GEVIVPYYPELLQALHPLFALTSKGTEGGVVDNAAAAVARMIMAAPAALPMDQVLPVFLSALPLKSDRSENETVYTCLLGLIHLRHPEALRLLDPIMA 1035          
BLAST of mRNA_E-fasciculatus_F_contig12025.1579.1 vs. uniprot
Match: A0A835ZQ81_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ81_9STRA)

HSP 1 Score: 114 bits (286), Expect = 3.860e-27
Identity = 60/99 (60.61%), Postives = 75/99 (75.76%), Query Frame = 1
Query:   79 GEVVVPYYPELLQALHPLFALTSKG-TEGGVVDNAAAAVARMIMAAPAALPMDQVLPVFLSALPLKSDRSENEAVYTCLLGLIHLRHPEALRLLDSIMS 372
            GE + P+  ELLQ L P+F    KG TEGG++DNAAAAVAR++MAAP A+PM+QVLP  LSALPLK D  ENE VY C++GL+ +RHP AL  L +IM+
Sbjct: 1385 GESITPHVLELLQLLAPIFQKAGKGSTEGGLLDNAAAAVARIVMAAPGAVPMEQVLPALLSALPLKVDAQENETVYGCVIGLLKMRHPAALASLPAIMT 1483          
BLAST of mRNA_E-fasciculatus_F_contig12025.1579.1 vs. uniprot
Match: A0A7S2D6V2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D6V2_9STRA)

HSP 1 Score: 102 bits (255), Expect = 5.680e-25
Identity = 59/108 (54.63%), Postives = 72/108 (66.67%), Query Frame = 1
Query:   25 GVNVNSRTHACFVLFLFLGEVVVPYYPELLQALHPLFALTSKGTEGGVVDNAAAAVARMIMAAPAALPMDQVLPVFLSALPLKSDRSENEAVYTCLLGLIHLRHPEAL 348
            GV  N+    C V+ L   E V P+Y  LLQ LHPLF +        V+DNAAAAVARM+ A+ A++P  QVLPVFL  LPLK D +ENEAVY CL GLI +RHP+A+
Sbjct:   25 GVRRNAA-FCCGVMALASPETVAPHYLTLLQHLHPLFQMDPT-LHAAVIDNAAAAVARMMTASLASMPTAQVLPVFLGCLPLKDDMNENEAVYACLAGLIEMRHPDAM 130          
BLAST of mRNA_E-fasciculatus_F_contig12025.1579.1 vs. uniprot
Match: A0A7S2VZD1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VZD1_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.460e-23
Identity = 51/92 (55.43%), Postives = 69/92 (75.00%), Query Frame = 1
Query:   76 LGEVVVPYYPELLQALHPLFAL--TSKGTEGGVVDNAAAAVARMIMAAPAALPMDQVLPVFLSALPLKSDRSENEAVYTCLLGLIHLRHPEA 345
            LG+++V  YP++LQA+ PLFAL   +  +    +DNAAAA++RMIMA+PA +PM QVLPV L ALPLK+D +ENE VY CLLGL+ +   +A
Sbjct:  187 LGDLIVTVYPQILQAISPLFALDQNTSDSSAAAIDNAAAAISRMIMASPANVPMGQVLPVLLRALPLKNDMTENETVYQCLLGLLQMNQEDA 278          
BLAST of mRNA_E-fasciculatus_F_contig12025.1579.1 vs. uniprot
Match: A0A7S1BKM5_9STRA (Hypothetical protein n=4 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKM5_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.060e-23
Identity = 61/117 (52.14%), Postives = 74/117 (63.25%), Query Frame = 1
Query:   22 LGVNVNSR--THACFVLFLFLGEVVVPYYPELLQALHPLFALTSKGTEGGV-------VDNAAAAVARMIMAAPAALPMDQVLPVFLSALPLKSDRSENEAVYTCLLGLIHLRHPEA 345
            L V  NS     AC   F   G + +P YP++L AL PLF L   G  GGV       VDNA AAVARMIMA+P  +P+ QVLP  L+ +PL+SD SENE VY CLLGL+H+ HP+A
Sbjct:  944 LNVRRNSAFCAGACCKSF---GLLPIPQYPQILTALSPLFVLEKAGPSGGVTDPAGACVDNAVAAVARMIMASPENVPVGQVLPTILANVPLRSDFSENETVYECLLGLLHMNHPDA 1057          
BLAST of mRNA_E-fasciculatus_F_contig12025.1579.1 vs. uniprot
Match: A0A7R9Z5S6_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z5S6_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.450e-22
Identity = 50/92 (54.35%), Postives = 63/92 (68.48%), Query Frame = 1
Query:   76 LGEVVVPYYPELLQALHPLFAL--TSKGTEGGVVDNAAAAVARMIMAAPAALPMDQVLPVFLSALPLKSDRSENEAVYTCLLGLIHLRHPEA 345
            LGE V P Y ++LQA+ PLF +           VDNAAAAV+RMIMA+P  +PM QVLP  L ALPLK+D +EN+ VY CLLGL+ +  P+A
Sbjct:   84 LGETVAPQYGQILQAISPLFGIDPAQGDASAAAVDNAAAAVSRMIMASPGNVPMSQVLPALLKALPLKNDMTENDTVYKCLLGLLQMNQPDA 175          
BLAST of mRNA_E-fasciculatus_F_contig12025.1579.1 vs. uniprot
Match: A0A067CRP9_SAPPC (Importin N-terminal domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CRP9_SAPPC)

HSP 1 Score: 101 bits (251), Expect = 1.970e-22
Identity = 56/119 (47.06%), Postives = 80/119 (67.23%), Query Frame = 1
Query:   25 GVNVNSRTHACFVLFLFL---GEVVVPYYPELLQALHPLFALTSKGTEGGVVDNAAAAVARMIMAAPAALPMDQVLPVFLSALPLKSDRSENEAVYTCLLGLIHLRHPEALRLLDSIMS 372
            G N + + +A F L + +   G  + P Y ++LQALHPLFA      E GVVDNAA+AVA+MIM  P ++P+D V+PVFL ALPLK+D +E E+V+TCLLGL+  ++P  L  +  + +
Sbjct:  906 GENTSVQRNAAFALGMLVKMSGASLAPQYLQVLQALHPLFA----SEEEGVVDNAASAVAKMIMTHPDSVPLDAVMPVFLKALPLKADFTETESVFTCLLGLLQAQNPVVLNAMPQVAA 1020          
BLAST of mRNA_E-fasciculatus_F_contig12025.1579.1 vs. uniprot
Match: A0A024GL05_9STRA (Importin N-terminal domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024GL05_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.660e-22
Identity = 56/98 (57.14%), Postives = 70/98 (71.43%), Query Frame = 1
Query:   79 GEVVVPYYPELLQALHPLFALTSKGTEGGVVDNAAAAVARMIMAAPAALPMDQVLPVFLSALPLKSDRSENEAVYTCLLGLIHLRHPEALRLLDSIMS 372
            GE +   Y ++LQALHPLF  T++  +  VVDNAAAAVARMI  +P ++P+  VLPVFL ALPLKSD  ENEAVY CL GL+  +H + L+ L SIM 
Sbjct:  929 GEKLTSAYQQMLQALHPLF--TAERNDERVVDNAAAAVARMITTSPTSVPLAPVLPVFLGALPLKSDFEENEAVYKCLNGLVRSKHNDVLQHLGSIME 1024          
BLAST of mRNA_E-fasciculatus_F_contig12025.1579.1 vs. uniprot
Match: A0A7S1ZX61_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZX61_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.020e-21
Identity = 51/93 (54.84%), Postives = 68/93 (73.12%), Query Frame = 1
Query:   76 LGEVVVPYYPELLQALHPLFAL--TSKGTEGGVVDNAAAAVARMIMAAPAALPMDQVLPVFLSALPLKSDRSENEAVYTCLLGLIHLRHPEAL 348
            LGE +   YP+LLQA+ PLF++  T+  +    +DNAAA V+RMIMA+P  +PM QVLPV L ALPLK+D +ENE VY CLLGL+ +  P+A+
Sbjct:  395 LGENIASDYPQLLQAISPLFSVDPTAGDSSAACIDNAAAGVSRMIMASPGNVPMPQVLPVLLKALPLKNDMTENETVYKCLLGLLQMNQPDAI 487          
BLAST of mRNA_E-fasciculatus_F_contig12025.1579.1 vs. uniprot
Match: A0A6T8N9T7_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8N9T7_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 3.380e-21
Identity = 56/109 (51.38%), Postives = 71/109 (65.14%), Query Frame = 1
Query:   76 LGEVVVPYYPELLQALHPLFALTSKGTE--GGVVDNAAAAVARMIMAAPAAL-PMDQVLPVFLSALPLKSDRSENEAVYTCLLGLIHLRHP-------EALRLLDSIMS 372
            LGE+VV  YP++L  + PLF + S  ++     VDNAAAAV+RMI   P A+ PM+QVLPV L ALPLK+D +ENE VY CLLGL+   HP       E LR+  S M+
Sbjct:  179 LGELVVSQYPQILSTISPLFQIDSSASDQSAACVDNAAAAVSRMITTCPQAVQPMNQVLPVLLKALPLKNDMTENETVYKCLLGLLQANHPDVAVNKAEFLRVFQSAMA 287          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12025.1579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIB4_9PHAE3.770e-5195.92Importin N-terminal domain-containing protein n=2 ... [more]
A0A835ZQ81_9STRA3.860e-2760.61Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A7S2D6V2_9STRA5.680e-2554.63Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2VZD1_9STRA2.460e-2355.43Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S1BKM5_9STRA3.060e-2352.14Hypothetical protein n=4 Tax=Corethron hystrix Tax... [more]
A0A7R9Z5S6_9STRA1.450e-2254.35Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A067CRP9_SAPPC1.970e-2247.06Importin N-terminal domain-containing protein n=2 ... [more]
A0A024GL05_9STRA3.660e-2257.14Importin N-terminal domain-containing protein n=2 ... [more]
A0A7S1ZX61_9STRA1.020e-2154.84Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6T8N9T7_9STRA3.380e-2151.38Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12025contigE-fasciculatus_F_contig12025:62..433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score187.6
Seed ortholog evalue3.6e-45
Seed eggNOG ortholog2880.D7FQF7
KEGG koko:K20221
KEGG TC1.I.1
GOsGO:0000060,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0006606,GO:0006607,GO:0006610,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008139,GO:0008150,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0017038,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0033036,GO:0033218,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0042277,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061608,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0140104,GO:0140142
EggNOG free text desc.ribosomal protein import into nucleus
EggNOG OGsKOG2171@1,KOG2171@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionImportin-beta, N-terminal domain
Ec32 orthologEc-01_006300.1
Exons1
Model size372
Cds size372
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927711.6246731-CDS-E-fasciculatus_F_contig12025:61..4331622927711.6246731-CDS-E-fasciculatus_F_contig12025:61..433Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12025 62..433 +
1695995661.6598186-CDS-E-fasciculatus_F_contig12025:61..4331695995661.6598186-CDS-E-fasciculatus_F_contig12025:61..433Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12025 62..433 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12025.1579.1prot_E-fasciculatus_F_contig12025.1579.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12025 62..433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12025.1579.1

>prot_E-fasciculatus_F_contig12025.1579.1 ID=prot_E-fasciculatus_F_contig12025.1579.1|Name=mRNA_E-fasciculatus_F_contig12025.1579.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=124bp
MFGCELYLGVNVNSRTHACFVLFLFLGEVVVPYYPELLQALHPLFALTSK
GTEGGVVDNAAAAVARMIMAAPAALPMDQVLPVFLSALPLKSDRSENEAV
YTCLLGLIHLRHPEALRLLDSIMS
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mRNA from alignment at E-fasciculatus_F_contig12025:62..433+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12025.1579.1 ID=mRNA_E-fasciculatus_F_contig12025.1579.1|Name=mRNA_E-fasciculatus_F_contig12025.1579.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=372bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12025:62..433+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTTGGCTGTGAACTTTACCTCGGAGTCAACGTCAACTCACGCACACA CGCCTGTTTTGTTTTGTTTTTGTTTTTAGGGGAGGTGGTCGTGCCGTACT ACCCCGAGCTTCTCCAAGCCTTGCATCCCCTCTTCGCGCTGACGAGCAAG GGCACGGAGGGGGGCGTGGTGGACAACGCGGCCGCCGCGGTAGCGAGGAT GATCATGGCGGCGCCGGCGGCGTTGCCGATGGACCAGGTTCTCCCGGTGT TCCTGTCCGCGCTGCCGCTCAAGTCGGACCGCAGCGAGAACGAGGCGGTG TACACGTGCCTGCTCGGGCTGATCCACCTGCGCCACCCGGAGGCGCTGCG GTTGCTGGACTCCATCATGAGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12025:62..433+

>mRNA_E-fasciculatus_F_contig12025.1579.1 ID=mRNA_E-fasciculatus_F_contig12025.1579.1|Name=mRNA_E-fasciculatus_F_contig12025.1579.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=744bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12025:62..433+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTTGGCTGTGAACTTTACCTCGGAGTCAACGTCAACTCACGCACACA
CGCCTGTTTTGTTTTGTTTTTGTTTTTAGGGGAGGTGGTCGTGCCGTACT
ACCCCGAGCTTCTCCAAGCCTTGCATCCCCTCTTCGCGCTGACGAGCAAG
GGCACGGAGGGGGGCGTGGTGGACAACGCGGCCGCCGCGGTAGCGAGGAT
GATCATGGCGGCGCCGGCGGCGTTGCCGATGGACCAGGTTCTCCCGGTGT
TCCTGTCCGCGCTGCCGCTCAAGTCGGACCGCAGCGAGAACGAGGCGGTG
TACACGTGCCTGCTCGGGCTGATCCACCTGCGCCACCCGGAGGCGCTGCG
GTTGCTGGACTCCATCATGAGTATGTTTGGCTGTGAACTTTACCTCGGAG
TCAACGTCAACTCACGCACACACGCCTGTTTTGTTTTGTTTTTGTTTTTA
GGGGAGGTGGTCGTGCCGTACTACCCCGAGCTTCTCCAAGCCTTGCATCC
CCTCTTCGCGCTGACGAGCAAGGGCACGGAGGGGGGCGTGGTGGACAACG
CGGCCGCCGCGGTAGCGAGGATGATCATGGCGGCGCCGGCGGCGTTGCCG
ATGGACCAGGTTCTCCCGGTGTTCCTGTCCGCGCTGCCGCTCAAGTCGGA
CCGCAGCGAGAACGAGGCGGTGTACACGTGCCTGCTCGGGCTGATCCACC
TGCGCCACCCGGAGGCGCTGCGGTTGCTGGACTCCATCATGAGT
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