mRNA_E-fasciculatus_F_contig12020.1578.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12020.1578.1
Unique NamemRNA_E-fasciculatus_F_contig12020.1578.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12020.1578.1 vs. uniprot
Match: D7G030_ECTSI (EXS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G030_ECTSI)

HSP 1 Score: 400 bits (1029), Expect = 2.300e-138
Identity = 202/204 (99.02%), Postives = 204/204 (100.00%), Query Frame = 1 
Query:    1 MMSSDEYEELYLASVRVPLVLAVFLGLWGLVILVLQALQIDFSSVLRKASGPRLATEDEGDTSGKGKPTRVPTPPSWRQVVSTAAGFLGVLLACIHGSRMLRVPPTVAVGGFYFILGGALLVPLQAPSVRQHTALFFTSLAGVFFPATDVHFAEVLVADALTSLSRVFADVAVTFLLVAKGWGMRYPGWAFLYTPCVFASFPYW 612
            MMSSDEYEELYLASVRVPLVLAVFLGLWGLVILVLQALQI+FSSVLRKASGPRLATED+GDTSGKGKPTRVPTPPSWRQVVSTAAGFLGVLLACIHGSRMLRVPPTVAVGGFYFILGGALLVPLQAPSVRQHTALFFTSLAGVFFPATDVHFAEVLVADALTSLSRVFADVAVTFLLVAKGWGMRYPGWAFLYTPCVFASFPYW
Sbjct:    1 MMSSDEYEELYLASVRVPLVLAVFLGLWGLVILVLQALQIEFSSVLRKASGPRLATEDQGDTSGKGKPTRVPTPPSWRQVVSTAAGFLGVLLACIHGSRMLRVPPTVAVGGFYFILGGALLVPLQAPSVRQHTALFFTSLAGVFFPATDVHFAEVLVADALTSLSRVFADVAVTFLLVAKGWGMRYPGWAFLYTPCVFASFPYW 204
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BLAST of mRNA_E-fasciculatus_F_contig12020.1578.1 vs. uniprot
Match: A0A835YVP0_9STRA (EXS family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP0_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 4.020e-20
Identity = 70/197 (35.53%), Postives = 102/197 (51.78%), Query Frame = 1 
Query:   22 EELYLASVRVPLVLAVFLGLWGLVILVLQALQIDFSSVLRKAS--------GPRLATEDEGDT------SGKGKPTRVPTPPSWRQVVSTAAG---FLGVLLACIHGSRMLRVPPTVAVGGFYFILGGALLVPLQAPSVRQHTALFFTSLAGVFFPATDVHFAEVLVADALTSLSRVFADVAVTFLLVAKGWGMRYP 561
            EELY   +RVP+VL VF  L G+V+L L  L ID++   +KAS          RL   +  +T      +    P  +P   S    +    G    L +LL C+    + ++ P VAVG F  ++G  LLVP+Q+ ++R       +++  V  P++DV F EVLVADAL SLSRVF+D  +  L++A  W    P
Sbjct:    2 EELYRLCLRVPIVLIVFGCLCGVVMLALDQLGIDYAYHAKKASKLGECHQAALRLRCRETSETVCVLTVASCASPLPLPADKSRSAALQLVLGSGFLLALLLLCLRIGELAQIMPNVAVGAFAIMVGLMLLVPMQS-AMRDGLNFLLSTVGRVLCPSSDVPFVEVLVADALCSLSRVFSDAGLAILVLAATWTSSAP 197
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BLAST of mRNA_E-fasciculatus_F_contig12020.1578.1 vs. uniprot
Match: A0A7S2V3Y7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3Y7_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.360e-13
Identity = 56/172 (32.56%), Postives = 82/172 (47.67%), Query Frame = 1 
Query:   28 LYLASVRVPLVLAVFLGLWGLVILVLQALQIDFSSVLRKASGPRLATEDEGDTSGKGKPTRVPTPPSWRQVVSTAAGFLGVLLACIHGSRMLRVPPTVAVGGFYFILGGALLVPLQAPSVRQHTALFFTSLAGVFFPATDVHFAEVLVADALTSLSRVFADVAVTFLLVAKG 543
            ++ A VR PLV+ +++ LWG  +L+L+ L+I  SSV    SGP L T      +G                  +A  F G++         L   P  AV  FY  +G  L++P  + + R H       +  +FFP   V+F EV VAD++TSL++V AD      LVA G
Sbjct:    1 MFCALVRAPLVIIIYIALWGFNLLILEWLRIVPSSVFSNKSGPELVTGSGAQLAGY-----------------SACLFSGLVFCLGLWCWRLNGTPEGAVCLFYLAVGLYLMLP-SSKAFRSHLGYLLGVMKRIFFPQGRVNFVEVFVADSMTSLAKVLADFGAGIWLVALG 154
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BLAST of mRNA_E-fasciculatus_F_contig12020.1578.1 vs. uniprot
Match: A0A7S2WQN9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WQN9_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.150e-9
Identity = 55/184 (29.89%), Postives = 91/184 (49.46%), Query Frame = 1 
Query:    4 MSSDEYEELYLASVRVPLVLAVFLGLWGLVILVLQA-LQID-FSSVLRKASGPRLATEDEGDTSGKGKPTRVPTPPSWRQVVSTAAGFLGVLL-ACIHGSRMLRVPPTVAVGGFYFILGGALLVPLQAPSVRQHTALFFTSLAGVFFPATD--VHFAEVLVADALTSLSRVFADVAVTFLLVAK 540
            +S D ++E   A +R P+V  ++L LWG+ +  ++  L ID F +VL + S P +     G +        +P  PS R ++ +A   LG LL + +    +L      A+  FY  +   L+V       R +   +  +L  V +P+ +  V F EV VADA+TSLS+VFAD  +   ++  
Sbjct:   27 LSPDAHQEYLRALLRAPIVTILYLALWGIAVFFIKTTLHIDLFGTVLARPSPPLVNGRLPGSS------LSLPPAPSPRTILLSALALLGTLLWSFLVWCGLLHGSVEGAIFAFYVAIPFILVVLPVVGFGRGNIFPYIRTLRRVLWPSAEENVPFVEVFVADAMTSLSKVFADTGLVLAVLVS 204
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12020.1578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G030_ECTSI2.300e-13899.02EXS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YVP0_9STRA4.020e-2035.53EXS family-domain-containing protein n=1 Tax=Tribo... [more]
A0A7S2V3Y7_9STRA1.360e-1332.56Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2WQN9_9STRA2.150e-929.89Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12020contigE-fasciculatus_F_contig12020:1689..4103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score400.2
Seed ortholog evalue5.8e-109
Seed eggNOG ortholog2880.D7G030
EggNOG free text desc.phosphate ion transport
EggNOG OGsCOG5409@1,KOG1162@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons3
Model size615
Cds size615
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12020.1578.1prot_E-fasciculatus_F_contig12020.1578.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12020 1689..4103 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927711.5525424-CDS-E-fasciculatus_F_contig12020:1688..18391622927711.5525424-CDS-E-fasciculatus_F_contig12020:1688..1839Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12020 1689..1839 +
1695995661.6316104-CDS-E-fasciculatus_F_contig12020:1688..18391695995661.6316104-CDS-E-fasciculatus_F_contig12020:1688..1839Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12020 1689..1839 +
1622927711.5630696-CDS-E-fasciculatus_F_contig12020:3192..34301622927711.5630696-CDS-E-fasciculatus_F_contig12020:3192..3430Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12020 3193..3430 +
1695995661.6427946-CDS-E-fasciculatus_F_contig12020:3192..34301695995661.6427946-CDS-E-fasciculatus_F_contig12020:3192..3430Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12020 3193..3430 +
1622927711.572846-CDS-E-fasciculatus_F_contig12020:3877..41031622927711.572846-CDS-E-fasciculatus_F_contig12020:3877..4103Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12020 3878..4103 +
1695995661.6509247-CDS-E-fasciculatus_F_contig12020:3877..41031695995661.6509247-CDS-E-fasciculatus_F_contig12020:3877..4103Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12020 3878..4103 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12020.1578.1

>prot_E-fasciculatus_F_contig12020.1578.1 ID=prot_E-fasciculatus_F_contig12020.1578.1|Name=mRNA_E-fasciculatus_F_contig12020.1578.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=205bp
MMSSDEYEELYLASVRVPLVLAVFLGLWGLVILVLQALQIDFSSVLRKAS
GPRLATEDEGDTSGKGKPTRVPTPPSWRQVVSTAAGFLGVLLACIHGSRM
LRVPPTVAVGGFYFILGGALLVPLQAPSVRQHTALFFTSLAGVFFPATDV
HFAEVLVADALTSLSRVFADVAVTFLLVAKGWGMRYPGWAFLYTPCVFAS
FPYW*
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mRNA from alignment at E-fasciculatus_F_contig12020:1689..4103+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12020.1578.1 ID=mRNA_E-fasciculatus_F_contig12020.1578.1|Name=mRNA_E-fasciculatus_F_contig12020.1578.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2415bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12020:1689..4103+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGTCGAGCGACGAGTACGAGGAACTGTATCTCGCTTCCGTGAGGGT
GCCGCTGGTGTTGGCCGTGTTCCTGGGGCTCTGGGGCCTCGTGATCCTGG
TGCTGCAGGCGCTGCAGATCGACTTCAGCTCCGTCCTCCGAAAGGCTTCC
GGTGCGGTGTGGATAAGCTATGTAGCTGCCTCGCGTTGGATGAGACTTTG
GGAAAGTTCTGTGACGTAGTCTAGATATGGGTACGAAAATTTGCGCCTGT
ATTTTTGCGCCGTCGTATGCCTTTGGTGTGCAGGCAATGCCTGTGTATGT
ATGCATACACAACGGGTACCAACCATTGCACGTGCACTGCCTCTGGGAGA
AAACTGCTGTCGTGACTGAGAATCGCGTCCCCTCTGTGCTCTTTGGTGGC
GTTTTAATCGCTGCTGTGGTGGTCACAGCAGTGTGAGAGCACGGCAAAAC
GAAGGGACCACATGTTTTACTGCATCACCACACGCGATCATTTCTACATG
TACTTCGTAAACAGCACGTAAATAACATGCCCTCTGTTCTGTCTCTGTCA
CCGATCATCCCGTTCCGACTCTACCTGGCCGTGGCCCGATGGTGCTTTGA
TGTTGAAACTTGAAAAGTTGTAGTTGACAGCGACATACACCCGATGATAT
GCTACGGACTGCTGTGCGCGGTATGTACCACCCCTTTTTCAAACGGAAAA
TTGATGTCATGCAGCAGCATGTAGCATCTATATTGTATTGTGTGAATATT
TTCATGTACTCCGAAAAAACCGTATGATCCAATGCAATGGCCTGGGGTGG
AACGCGCTACAGGTGTGTACGCAGAGGCACAGCGGGAAGAGAGTTCTGCC
CTCTTTATCGCATAGAAAATCGAAGGAAGGCAAAGCACCGCAAGAGGGGT
GGGTGGGGGACGTCAGGGATAGGATAGGAACCCTTACCTTCTGTATGACC
ACGGGTTGAAAGTAGACGGCACAAGCGCTGCTGTTAGCGCTGATCTCAAG
TAGGGAAGAACTGCTGTATGAGCGACGGACCCGTTCGACAGAACGCGGTG
TGTGTTGAAATCTTGAAATCTTACTCTTTACGGCGGTGTCAATCAACGGA
AATAGGAATATAATAGGAATCGACACTGCTGTTGTCCGTGCTATGTATAA
AGCCTGTTCTGCTACAGTATAGCTACAGCAGTAGCACACGATGTTTTTTC
TCGTCGGAATTGGATTTCCTTGCTTTTTATTTTCATTTCGTGGTGATGCC
GCTGCCTGCTGCCCTCCCTCTGTGCATACAACCTACAGCAGTACTTGTAC
AACCGTGAGAGTTCCCCCAATGGAATAGTGGAATAGCGCGGTGTTCCACA
AATCTACTCCCGAAACGTCTCGAAAAGAAAAGGCACAAACGCGCTTGAGA
CTGGCGTCTTCTCCTGAGATACAGCGCGGTCGGGGCGTTAAAGTAAAAAC
ACACCGTTTACCCCCGCCCCCACCCCCACCCCTTATGTATTCTGCTGTCT
GCAGGCCCCCGCCTTGCGACGGAAGACGAAGGAGACACGTCCGGAAAGGG
AAAGCCGACGCGCGTGCCCACGCCCCCCAGCTGGCGGCAGGTCGTGTCCA
CGGCCGCGGGGTTTCTTGGAGTGCTGCTGGCGTGCATACACGGGTCGCGC
ATGCTGCGGGTCCCCCCGACCGTGGCCGTCGGGGGTTTCTACTTCATCCT
CGGGGGGGCGTTGCTGGTGCCGCTTCAGGCTCCGTCCGTGAGGTGGGCGT
CAGGGGCGCGTTTGGTTGACCGCTGCTGCTGCTTGTGCGATTCTAGCCGC
CTCGTATGAGGACTTGGAGATTGGATTAGTGTGTGCCTTCGTTCGGGTGG
ACTGCACGACAAAGAGAGGGAGAGACACGGAGAGAGCTGACGACCCCGCT
CTTTGGGTTGCCCGCGAACCTATTTCCCGCGCCTCGGGGGCGGAGCGCGC
TCTTGATGCCTTTACTGAAATCCGGCAGGTGTACTACTGTATCATTTAAG
ACGTCCGAAACATGAGTATGCGTCCCGCGTCAGTTGGACCACTACGGACA
TTAGAAGGTACAGTACTGAGCGGAGACCGGAACGTTTATGTGAAGACAAC
AACAACAACAACAGCAACAACAACAACAACAACAACAACAACAACAACAA
CAACAAACCCCCTCCTCGTGGCCGGACCGGGACACGCAGGCAACACACGG
CGCTGTTCTTCACGTCGCTGGCGGGGGTCTTCTTCCCGGCGACGGACGTG
CACTTCGCCGAGGTCTTGGTGGCGGACGCGCTGACGAGCCTCTCGAGGGT
GTTCGCCGACGTCGCGGTCACCTTCCTGCTCGTGGCCAAGGGCTGGGGGA
TGAGGTACCCCGGGTGGGCGTTCTTGTACACCCCGTGCGTGTTCGCCAGC
TTTCCGTACTGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12020:1689..4103+

>mRNA_E-fasciculatus_F_contig12020.1578.1 ID=mRNA_E-fasciculatus_F_contig12020.1578.1|Name=mRNA_E-fasciculatus_F_contig12020.1578.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1230bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12020:1689..4103+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGTCGAGCGACGAGTACGAGGAACTGTATCTCGCTTCCGTGAGGGT
GCCGCTGGTGTTGGCCGTGTTCCTGGGGCTCTGGGGCCTCGTGATCCTGG
TGCTGCAGGCGCTGCAGATCGACTTCAGCTCCGTCCTCCGAAAGGCTTCC
GATGATGTCGAGCGACGAGTACGAGGAACTGTATCTCGCTTCCGTGAGGG
TGCCGCTGGTGTTGGCCGTGTTCCTGGGGCTCTGGGGCCTCGTGATCCTG
GTGCTGCAGGCGCTGCAGATCGACTTCAGCTCCGTCCTCCGAAAGGCTTC
CGGCCCCCGCCTTGCGACGGAAGACGAAGGAGACACGTCCGGAAAGGGAA
AGCCGACGCGCGTGCCCACGCCCCCCAGCTGGCGGCAGGTCGTGTCCACG
GCCGCGGGGTTTCTTGGAGTGCTGCTGGCGTGCATACACGGGTCGCGCAT
GCTGCGGGTCCCCCCGACCGTGGCCGTCGGGGGTTTCTACTTCATCCTCG
GGGGGGCGTTGCTGGTGCCGCTTCAGGCTCCGTCCGTGAGGCCCCCGCCT
TGCGACGGAAGACGAAGGAGACACGTCCGGAAAGGGAAAGCCGACGCGCG
TGCCCACGCCCCCCAGCTGGCGGCAGGTCGTGTCCACGGCCGCGGGGTTT
CTTGGAGTGCTGCTGGCGTGCATACACGGGTCGCGCATGCTGCGGGTCCC
CCCGACCGTGGCCGTCGGGGGTTTCTACTTCATCCTCGGGGGGGCGTTGC
TGGTGCCGCTTCAGGCTCCGTCCGTGAGGCAACACACGGCGCTGTTCTTC
ACGTCGCTGGCGGGGGTCTTCTTCCCGGCGACGGACGTGCACTTCGCCGA
GGTCTTGGTGGCGGACGCGCTGACGAGCCTCTCGAGGGTGTTCGCCGACG
TCGCGGTCACCTTCCTGCTCGTGGCCAAGGGCTGGGGGATGAGGTACCCC
GGGTGGGCGTTCTTGTACACCCCGTGCGTGTTCGCCAGCTTTCCGTACTG
GTGAGCAACACACGGCGCTGTTCTTCACGTCGCTGGCGGGGGTCTTCTTC
CCGGCGACGGACGTGCACTTCGCCGAGGTCTTGGTGGCGGACGCGCTGAC
GAGCCTCTCGAGGGTGTTCGCCGACGTCGCGGTCACCTTCCTGCTCGTGG
CCAAGGGCTGGGGGATGAGGTACCCCGGGTGGGCGTTCTTGTACACCCCG
TGCGTGTTCGCCAGCTTTCCGTACTGGTGA
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