mRNA_E-fasciculatus_F_contig12017.1574.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12017.1574.1
Unique NamemRNA_E-fasciculatus_F_contig12017.1574.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12017.1574.1 vs. uniprot
Match: D7FL06_ECTSI (TLDc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL06_ECTSI)

HSP 1 Score: 753 bits (1944), Expect = 6.780e-268
Identity = 395/417 (94.72%), Postives = 403/417 (96.64%), Query Frame = 1 
Query:    1 QVVVLMINFTFSALTLGFASAGTYVPRTRAVLASIWHEALPMLIYSQVLIWGQSCVALLTVGLIRLGNPDVSVFLGALITMGLETGRDVMSFSTREIAGEWADEVVRLADSLGLLLSVFGGICLMTMHMGSWGPTGARAAPDRGRQGLGGAAAAGGLAGGGRGHGLGDGLPGFDDSNLVGSSDTGGNNHRSRSLSPRSRPALRGAGIAGSALEAGTPEASVAGRDRGPTLGIHRAGLGAHLLLPAVSVGAAWLVDLFIRFLENRVEYTAKHHIISGFRLFQLSMCAALLFMCFIRRTSPFRYHSEWFFRLSGLCLDLMTTAAISSIGFASIPDKFNAAFLLVLFSCIMWNVGVFIVLAPRMFPNFWLLRATALIGDALGHSWVGLLLLRAMDFRLQTPVPLAYAYKTMMFFVPASGS 1251
            +VVVLMINFTFSALTLGFASAGTYVPRTRAVLASIWHEALPML+YSQVLIWGQSCVALLTVGLIRLGNPDVSVFLGAL+TMGLETGRDVMSFSTREIAGEWADEVVRLADSLGLLLSVFGGICLMTMHMGSWGPTGARA+PDRGRQGLGG AAAG       G GLG GLPGFDD+NL GSSD G NNHRSRSLSPRSRPALRGAGIAGS LEAGTPEASVAGRDRGPTLGIHRAGLGAHLLLPAVSVGAAWLVDLFIRFLENRVEYTAKHHIISGFRLFQLSMCAALLFMCFIRRTSPFRYHSEWFFRLSGLCLDLMTTAAISSIGFASIP+KFNAAFLLVLFSC++WNVGVFIVLAPRMFPNFWLLRATALIGDALGHSWVGLLLLRAMDFRLQTPVPLAYAYKTMMFFVPASGS
Sbjct:   88 EVVVLMINFTFSALTLGFASAGTYVPRTRAVLASIWHEALPMLVYSQVLIWGQSCVALLTVGLIRLGNPDVSVFLGALVTMGLETGRDVMSFSTREIAGEWADEVVRLADSLGLLLSVFGGICLMTMHMGSWGPTGARASPDRGRQGLGGTAAAGTA-----GRGLGGGLPGFDDANL-GSSDAGSNNHRSRSLSPRSRPALRGAGIAGSLLEAGTPEASVAGRDRGPTLGIHRAGLGAHLLLPAVSVGAAWLVDLFIRFLENRVEYTAKHHIISGFRLFQLSMCAALLFMCFIRRTSPFRYHSEWFFRLSGLCLDLMTTAAISSIGFASIPNKFNAAFLLVLFSCVLWNVGVFIVLAPRMFPNFWLLRATALIGDALGHSWVGLLLLRAMDFRLQTPVPLAYAYKTMMFFVPASGS 498
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12017.1574.1 vs. uniprot
Match: A0A835ZE27_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE27_9STRA)

HSP 1 Score: 208 bits (529), Expect = 1.710e-55
Identity = 110/209 (52.63%), Postives = 132/209 (63.16%), Query Frame = 1 
Query:  700 RAGLGAHLLLPAVSVGAAWLVDL--------------------------FIRFLENRVEYTAKHHIISGFRLFQLSMCAALLFMCFIRRTSPFRYHSEWFFRLSGLCLDLMTTAAISSIGFASIPDKFNAAFLLVLFSCIMWNVGVFIVLAPRMFPNFWLLRATALIGDALGHSWVGLLLLRAMDFRLQTPVPLAYAYKTMMFFVPASG 1248
            RAGLGAH+ L A +V AAW +DL                           +R  E RV + A+H IISGFRLF+LSMC AL  MC +RR +P  + SEWFFRLSGLCLDLM  AAI +I   ++P      F  V+ +C  WNV  F+ LAPRMFPN W+ R  AL  D LGH+WVGLL +RA+D  L+TPVPLAYAYKTM+FFVP SG
Sbjct:   92 RAGLGAHICLMAAAVLAAWAIDLAAIDLAVRSAEGLXXXXXXXXXXXXXXVRSAEGRVAWLARHRIISGFRLFKLSMCTALALMCALRRATPLVFRSEWFFRLSGLCLDLMAVAAIGTIAPRALPPGTAGPFAAVVAACCAWNVAAFLALAPRMFPNHWVSRGGALTADTLGHAWVGLLTVRAIDPGLRTPVPLAYAYKTMLFFVPDSG 300
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12017.1574.1 vs. uniprot
Match: A0A7S3GR50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GR50_9STRA)

HSP 1 Score: 134 bits (336), Expect = 2.050e-31
Identity = 119/412 (28.88%), Postives = 194/412 (47.09%), Query Frame = 1 
Query:   85 RAVLASIWHEALPMLIYSQVLIWGQS--CVALLTVGLIRLGNPDVSVFLGALITMGLETGRDVMSFSTREIAGEWADEVVRLADSLGLLLSVFGGICLMT------------------------MHMGSWGPTGARAAPDRGRQGLGGAAAAGGL-----AGGGRGHGLGDGLPGFDDSNLVGSSDTGGNNHRSRSLSPRSRPALRGAGIAGSALEAGTPEASVAGRDRG-PTLGIHRAG------LGAHLLLPAVSVGAAWLVDLFIRFLENRVEYTAKHHIISGFRLFQLSMCAALLFMCFIRRTSPFRYHSEWFFRLSGLCLDLMTTAAISSIG--FASIPDKFNAAFLLVLFSCIMWNVGVFIVLAPRMFPNFWLLRATALIGDALGHSWVGLLLLRAMDFRLQTPVP 1200
            R ++ S++HE +PM+IYSQ+L WGQ+  C+  + +     G    S F  A++ +G+E G D++  S      +W   +V  A+SLGLL     G+ L +                        +HM     TG   A  R RQ     A+ G +     A      G   G+      +  G+ ++   + R  S +   R  +  A  A +   +     S++  D     L +H AG      LGAHL L A++   ++ + L +  +E  +E    HH +SG R+F+L+MC A+  M FI + S  +++ +WF  + GL LDL+  AA+S     F  +         + +  C+ WN   F+ +A  +FPN+W  RA  L GD++GHS+ GLL +R +D  +++PVP
Sbjct:   20 RGIVTSLFHEGMPMVIYSQLLNWGQTTCCLLFVCISNFIFGMGIPSAF-AAMVPLGIEAGADIVLSSNYNT--DWTSSIVEEAESLGLLAITVSGVLLFSYKSYFISQGWLGKVYLRDTHNLSSLHMQH--STGQAEAFSRHRQNN---ASTGDIHTLQTAHASTTSGQKSGMAASRSFSNFGAFNSDQPSPRLESPTNSQRKQMNDANTASATTTSPYTARSLSFDDESNDLLLVHEAGKTNNASLGAHLALIALTAFMSFGLSLSLHLIE--IELRIDHHWLSGVRMFKLTMCCAMACMLFILQHSTIKFNRDWFMHMCGLLLDLLVIAALSKARPQFDELHQTHYFLCGVFVMICVAWNAFCFLFVARSLFPNYWFERALTLAGDSMGHSYTGLLFVRTLDPSMESPVP 421
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12017.1574.1 vs. uniprot
Match: A0A835ZFP8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFP8_9STRA)

HSP 1 Score: 108 bits (271), Expect = 9.250e-23
Identity = 62/128 (48.44%), Postives = 82/128 (64.06%), Query Frame = 1 
Query:    1 QVVVLMINFTFSALTLGFASAGTYVPRTRAVLASIWHEALPMLIYSQVLIWGQSCVALLTVGLIRLGNPDVSVFLGALITMGLETGRDVMSFSTREIAGEWADEVVRLADSLGLLLSVFGGICLMTMH 384
             VVV +IN  F+ L LGF +A TYVP TRA+L  IWHEALPML+YSQVL+WGQSCVAL+   L    NP V+ +LGAL   G   G           A + A ++VR AD++GL++S+   + +MT +
Sbjct:   76 DVVVNLINLCFAGLALGFGAAKTYVPHTRAILMGIWHEALPMLLYSQVLLWGQSCVALMVGALFSAHNPAVTPYLGALRKGGGAGG-----------AAD-AHDIVRQADAVGLMVSLAASVAVMTWN 191
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12017.1574.1 vs. uniprot
Match: A0A4D9DA04_9STRA (TLDc domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA04_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 7.630e-19
Identity = 56/121 (46.28%), Postives = 77/121 (63.64%), Query Frame = 1 
Query:   16 MINFTFSALTLGFASAGTYVPRT-RAVLASIWHEALPMLIYSQVLIWGQSCVALLTVGLIRLGNPDVSVFLGALITMGLETGRDVMSFSTREIAGEWADEVVRLADSLGLLLSVFGGICLM 375
            ++NF F+AL LGF S       T + +   I+HE +PML+Y+Q LIWG S VALL  G+ RL N ++S F G L+T+GLE GRD++   +R    E A  VV LADS GL +S+  G+ L+
Sbjct:  105 IVNFVFTALVLGFTSGTKKNKMTYKRIFGLIFHEGMPMLLYAQALIWGNSVVALLVTGIYRLWNTEISAFEGGLVTLGLEAGRDLLP--SRVKFKEEALAVVHLADSAGLTISIIVGVVLV 223
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12017.1574.1 vs. uniprot
Match: W7TMX7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMX7_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.310e-15
Identity = 42/86 (48.84%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:   16 MINFTFSALTLGFASAGTYVPRT-RAVLASIWHEALPMLIYSQVLIWGQSCVALLTVGLIRLGNPDVSVFLGALITMGLETGRDVM 270
            ++NF F+AL LGF S       T + +   I+HE +PML+Y+Q LIWG S VALL  G+ RL N ++S F G L+T+GLE GRD++
Sbjct:  105 IVNFVFTALVLGFTSGTKKNKMTYKRIFGLIFHEGMPMLLYAQALIWGNSVVALLVTGIYRLWNKEISAFEGGLVTLGLEAGRDLL 190
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12017.1574.1 vs. uniprot
Match: A0A831KUS8_9BACT (Sodium:glutamate symporter n=1 Tax=Candidatus Aminicenantes bacterium TaxID=2052149 RepID=A0A831KUS8_9BACT)

HSP 1 Score: 86.3 bits (212), Expect = 1.170e-14
Identity = 106/401 (26.43%), Postives = 162/401 (40.40%), Query Frame = 1 
Query:   61 AGTYVPRTRAVLASIWHEALPMLIYSQVLIWGQSCVALLTVGLIRL------GNPDVSVFLGALITMGLETGRDVMSFSTREIAG-EWAD--EVVRLADSLGLLLSVFGGICLMTMHMGSWGPTGARAAPDRGRQGLGGAAAAGGLAGGGRGHGLGDGLPGFDDSNLVGSSDTGGNNHRSRSLSPRSRPALRGAGIAGSALEAGTPEASVAGRDRGPTLGIHRAGLGAHLLLPAVSVGAAWLVDLFIRFLENRVEYTAKHHIISGFRLFQLSMCAALLFMCFIRRTSPFRY---HSEWFFRLSGLCLDLMTTAAISSIGFASIPDKFNAAFLLVLFSCIMWNVGVFIVLAPRMFPNFWLLRATALIGDALGHSWVGLLLLRAMDFRLQTPVPLAYAYKTMM 1227
            A  ++  T   L  IW  + P L Y QV+ WGQ  V +   GL+        G PDV    G ++ +G E G    +      A   W +  +    A ++G++ ++ GGI L+     +W                             RGH            + +G+ + GG        SP  RP                    VAGR   P   I    L  HL +  ++V   + +   +  +E+      + H +SGF LF L M   L+   F+ R     +         RLSG  LD +  +AIS+I    I  ++   FLL++   I WNV   + LA R+ P+ W  RA A +G ++G +  GLLLLRA+D   +T  P A+ YK ++
Sbjct:   74 AALFLGVTIPPLKEIWRRSAPQLAYGQVVAWGQYFVGM---GLVLFFLGPLFGLPDV---FGVIVEVGFEGGHGTAAGLRDTFATFRWPEGSDYALAAATVGVVSAIVGGIILI-----NWAAR--------------------------RGH-----THRLRPLDQLGTGEWGG------FYSPDRRP--------------------VAGRQTVPADSIDS--LAFHLAVIGIAVLIGFGIKQALVQIEHLWPSLQRSHALSGFPLFPLCMLGGLIIQVFLDRFRKIPFVPLDHALMQRLSGTALDFLVVSAISTIRLEIITARW-LPFLLIVMGGITWNVLCVMFLARRVLPDAWFERAIAEMGQSMGVTATGLLLLRAVDPENETAAPSAFGYKQLL 403
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12017.1574.1 vs. uniprot
Match: UPI000BB7E694 (sodium:glutamate symporter n=1 Tax=Bacillus TaxID=1386 RepID=UPI000BB7E694)

HSP 1 Score: 86.3 bits (212), Expect = 1.300e-14
Identity = 110/409 (26.89%), Postives = 175/409 (42.79%), Query Frame = 1 
Query:   28 TFSALTLGFASAGTYVPRTRAVLASIWHEALPMLIYSQVLIWGQSCVALLTVGLIRLGNPDVSVFLGALITMGLETGRDV---MSFSTREIA-GEWADEVVRLADSLGLLLSVFGGICLMTMHMGSWGPTGARAAPDRGRQGLGGAAAAGGLAGGGRGHGLGDGLPGFDDSNLVGSSDTGGNNHRSRSLSPRSRPALRGAGIAGSALEAGTPEASVAGRDRGPTLGIHRAGLGAHLLLPAVSVGAAW-LVDLFIRFLENRVEYTA--KHHIISGFRLFQLSMCAALLFMCFIRRTSPFRY-HSEWFFRLSGLCLDLMTTAAISSIGFASIPDKFNAAFLLVLFSCIMWNVGVFIVLAPRMFPNFWLLRATALIGDALGHSWVGLLLLRAMDFRLQTPVPLAYAYKTMMF 1230
            T   L +    A  ++ +    L  IW  A P +I  Q + WGQ  V LL V L+      V+   GALI +    G      +S + +++   E AD  V LA ++G++  V  GI L+     +WG    RA                                       V ++D         SLS   + A+         LE    E  +A ++   T  I    L  HL +  V++   + L++L I  L  RV + A    ++     LF L+M   +L   ++ +T    Y + E   R+SG  LD++  +A++S+  A I D   A FL++  + I+WNV  F+VLAPRM P +W  R    +G A+G +  GLLL++  D   ++P    + YK ++F
Sbjct:   82 TLPGLFINIVFAALFLGKVVPNLKKIWLIAGPQVIMGQTVSWGQYVVGLLLVILVLTPFFGVNPLAGALIEISFVGGHGTAAGLSGTFQDLGYAEGADLAVGLA-TIGIISGVIIGIILI-----NWGARTGRA-------------------------------------KFVKNAD---------SLSEEKQEAIV-------ELE----EREMAAKETKRTESIEP--LAFHLGIVGVAIALGYVLLELLI--LLERVTWGAWTGTYLFPYVPLFPLAMFGGMLIQIYLDKTGKASYINREIVNRISGFSLDVLIVSALASLSLAVIGDNL-APFLILATAAIIWNVFAFVVLAPRMIPQYWFERGIGDLGQAMGMTATGLLLMKIADPENKSPALEGFGYKQLLF 422
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12017.1574.1 vs. uniprot
Match: A0A7S2XYD2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYD2_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 6.160e-14
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:  703 AGLGAHLLLPAVSVGAAWLVDLFIRFLENRVEYTAKHHIISGFRLFQLSMCAALLFMCFIRRTSPFRYHSEWFFRLSG 936
            AGLG H+   A+SV  A++++L +R++E+ +E+   HHIISG RLF+LSM  +LL M  +RR    R+  EWF RLSG
Sbjct:   33 AGLGGHICFMALSVFLAYVINLGVRYVESHLEFFKVHHIISGIRLFKLSMLTSLLCMFCVRRWGRVRFRPEWFHRLSG 110
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12017.1574.1 vs. uniprot
Match: A0A0Q1AT16_9BACT (Uncharacterized protein n=1 Tax=Candidatus Cloacimonas sp. SDB TaxID=1732214 RepID=A0A0Q1AT16_9BACT)

HSP 1 Score: 84.0 bits (206), Expect = 6.920e-14
Identity = 56/176 (31.82%), Postives = 89/176 (50.57%), Query Frame = 1 
Query:  712 GAHLLLPAVSVGAAWLVDLFIRFLENRVEYTAKHHIISGFRLFQLSMCAALLFMCFIRRTSPFRYHSEWFFRL-SGLCLDLMTTAAISSIGFASIPDKFNAAFLLVLFSCIM---WNVGVFIVLAPRMFPNFWLLRATALIGDALGHSWVGLLLLRAMDFRLQTPVPLAYAYKTMM 1227
            G HL L  V++   + +   +  +++ + +  K+ I  GF LF L M   L+    + R            +  SG  LD +  AAIS+I      D  +A+ +     C+M   WN+   +VLAPR+ P+ W  RA A +G ++G +  GLLLLRA+D   +T  P A+AYK ++
Sbjct:  233 GIHLALLGVAIALGFGLKQVLLQIQHLIPFLEKNEIFQGFPLFPLCMIGGLILQAALSRWKKMDIIDTGLMQSWSGTALDFLIVAAISTIRI----DMISASIIPFGIICVMGILWNLFCILVLAPRLLPDSWFERAIAELGQSMGVTATGLLLLRAVDPNNETTAPSAFAYKQLL 404
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12017.1574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL06_ECTSI6.780e-26894.72TLDc domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835ZE27_9STRA1.710e-5552.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3GR50_9STRA2.050e-3128.88Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A835ZFP8_9STRA9.250e-2348.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9DA04_9STRA7.630e-1946.28TLDc domain-containing protein n=1 Tax=Nannochloro... [more]
W7TMX7_9STRA1.310e-1548.84Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A831KUS8_9BACT1.170e-1426.43Sodium:glutamate symporter n=1 Tax=Candidatus Amin... [more]
UPI000BB7E6941.300e-1426.89sodium:glutamate symporter n=1 Tax=Bacillus TaxID=... [more]
A0A7S2XYD2_9STRA6.160e-1448.72Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A0Q1AT16_9BACT6.920e-1431.82Uncharacterized protein n=1 Tax=Candidatus Cloacim... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12017contigE-fasciculatus_F_contig12017:1..4121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score752.3
Seed ortholog evalue1.2e-214
Seed eggNOG ortholog2880.D7FL06
EggNOG free text desc.negative regulation of peptidyl-cysteine S-nitrosylation
EggNOG OGsCOG5142@1,KOG2372@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionTLDc domain
Ec32 orthologEc-21_002090.1
Exons6
Model size1251
Cds size1236
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927710.908192-CDS-E-fasciculatus_F_contig12017:0..1541622927710.908192-CDS-E-fasciculatus_F_contig12017:0..154Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12017 1..154 -
1695995661.2941973-CDS-E-fasciculatus_F_contig12017:0..1541695995661.2941973-CDS-E-fasciculatus_F_contig12017:0..154Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12017 1..154 -
1622927710.9265695-CDS-E-fasciculatus_F_contig12017:547..6701622927710.9265695-CDS-E-fasciculatus_F_contig12017:547..670Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12017 548..670 -
1695995661.3061798-CDS-E-fasciculatus_F_contig12017:547..6701695995661.3061798-CDS-E-fasciculatus_F_contig12017:547..670Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12017 548..670 -
1622927710.9448147-CDS-E-fasciculatus_F_contig12017:928..10761622927710.9448147-CDS-E-fasciculatus_F_contig12017:928..1076Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12017 929..1076 -
1695995661.3220377-CDS-E-fasciculatus_F_contig12017:928..10761695995661.3220377-CDS-E-fasciculatus_F_contig12017:928..1076Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12017 929..1076 -
1622927710.9633687-CDS-E-fasciculatus_F_contig12017:1568..19811622927710.9633687-CDS-E-fasciculatus_F_contig12017:1568..1981Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12017 1569..1981 -
1695995661.3447652-CDS-E-fasciculatus_F_contig12017:1568..19811695995661.3447652-CDS-E-fasciculatus_F_contig12017:1568..1981Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12017 1569..1981 -
1622927710.9802122-CDS-E-fasciculatus_F_contig12017:3102..32031622927710.9802122-CDS-E-fasciculatus_F_contig12017:3102..3203Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12017 3103..3203 -
1695995661.3585672-CDS-E-fasciculatus_F_contig12017:3102..32031695995661.3585672-CDS-E-fasciculatus_F_contig12017:3102..3203Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12017 3103..3203 -
1622927711.0012145-CDS-E-fasciculatus_F_contig12017:3809..41061622927711.0012145-CDS-E-fasciculatus_F_contig12017:3809..4106Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12017 3810..4106 -
1695995661.3682187-CDS-E-fasciculatus_F_contig12017:3809..41061695995661.3682187-CDS-E-fasciculatus_F_contig12017:3809..4106Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12017 3810..4106 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927711.015309-UTR-E-fasciculatus_F_contig12017:4106..41211622927711.015309-UTR-E-fasciculatus_F_contig12017:4106..4121Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12017 4107..4121 -
1695995661.3764768-UTR-E-fasciculatus_F_contig12017:4106..41211695995661.3764768-UTR-E-fasciculatus_F_contig12017:4106..4121Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12017 4107..4121 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12017.1574.1prot_E-fasciculatus_F_contig12017.1574.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12017 1..4106 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12017.1574.1

>prot_E-fasciculatus_F_contig12017.1574.1 ID=prot_E-fasciculatus_F_contig12017.1574.1|Name=mRNA_E-fasciculatus_F_contig12017.1574.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=412bp
MINFTFSALTLGFASAGTYVPRTRAVLASIWHEALPMLIYSQVLIWGQSC
VALLTVGLIRLGNPDVSVFLGALITMGLETGRDVMSFSTREIAGEWADEV
VRLADSLGLLLSVFGGICLMTMHMGSWGPTGARAAPDRGRQGLGGAAAAG
GLAGGGRGHGLGDGLPGFDDSNLVGSSDTGGNNHRSRSLSPRSRPALRGA
GIAGSALEAGTPEASVAGRDRGPTLGIHRAGLGAHLLLPAVSVGAAWLVD
LFIRFLENRVEYTAKHHIISGFRLFQLSMCAALLFMCFIRRTSPFRYHSE
WFFRLSGLCLDLMTTAAISSIGFASIPDKFNAAFLLVLFSCIMWNVGVFI
VLAPRMFPNFWLLRATALIGDALGHSWVGLLLLRAMDFRLQTPVPLAYAY
KTMMFFVPASGS
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mRNA from alignment at E-fasciculatus_F_contig12017:1..4121-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12017.1574.1 ID=mRNA_E-fasciculatus_F_contig12017.1574.1|Name=mRNA_E-fasciculatus_F_contig12017.1574.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4121bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12017:1..4121- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGTCGTGGTGTTGATGATCAACTTCACCTTCTCCGCGCTAACCCTGGG
CTTCGCAAGCGCGGGGACCTACGTCCCCAGGACCCGGGCGGTGCTGGCCT
CCATCTGGCACGAGGCCCTGCCCATGCTGATCTACAGCCAGGTCCTCATC
TGGGGACAGTCGTGCGTGGCCCTGCTGACGGTCGGCCTCATCCGCCTGGG
AAACCCGGACGTCTCGGTCTTCCTCGGCGCTCTGATTACCATGGGCCTGG
AGACGGGGCGCGACGTGATGTCGTTCTCGACGAGAGAGATTGCGGGGGAA
TGGGCTGACGAGGTGAGCCTGGTGTGGTTGTCGGGATGTAGAGGTATATG
TGGGCGACTCTACTGGATTGGTCGGGAAACAGAAGGGGCAGGGGAGGGCA
GGTGTGTTGCCTTTGGAATTTGACCTTGTTCCCCTTTGTAGGCAGCAGTG
TGTTCCACCGATTCGTATTGTACAGAATACCCTGTTCGTCTGATCCAAAT
TGTGCACGAGGATAGATTTAGATTTAGATTACGCGTCCGATCCCATTTTC
TCCTTCGTTCTTGGGTACCACCATATGGGCCGGGGTTGTACCGATCGGTA
ATTAAGGCTGACGGGAGAAGGACCCTTGTAAGGGTAGCTTTGTGTCTCCT
GTTTGCTGGCCGTCTCCGAGCGGTCGTACGAAGCGTGTAGGCTTCAGCAC
TCGTGTTGGGTATCGAGAGCCTCCCCGACCTGCTTCCAGCGGCGCAAACT
TGTGAAGAAAGGTACTAATACCAACTTCGTCTCCGGTCCCCGGCCTTCTC
TCCGAAGCGTTTGGAAGACTCCATATCCCCCCCTGATGGAACCGCTGTGC
TTTTGTAATTTATCCATCTGGCCTACAGTACCTCCGCCCCCTCCTTCTCC
GTGCTTTGTACCGTGAAGGTGGTCCGTCTTGCCGACTCTTTGGGCTTACT
GCTATCCGTGTTTGGAGGCATTTGCCTCATGACGATGCACATGGGAAGCT
GGGGTCCGACCGGGGCCAGGTGAGGAGGGGAGATTTGGCTCAAAATCAGG
GGTGTCGCGGAGGTGGAAGCAAAGGAGGGGGGGGGGTAGTCGGTTATTGG
GTTAATTTTCTGCCCTCCAGGTTGACGCTGCTAACATGCGTGGCGAGTGA
CGGCTCTTGGCTCATGCAGAGACCCAAATTATCTTGCAAGCTTCCGTATG
GGAGCACAGAATAGATACCCTTATCCCACCACATCACCGGATGCTCCTTT
CCCCCACTTGGCTCTTTTCTGGTACATGTATCGAACCGCGACCGCACCTC
TTTTGTTGGTGCGTAAGCAGGGGATACTCCTTGGTGGGTAACGACGAGGC
CGCCGCCGGCGCTGGAGACGGCCTTCTCACCGGAGGGGACGGACAAAGGG
ATGCCGGCCGACACCGGGAGCACTTCCACCGCGGGAGGGGAAGGTGCGGC
TGGCTGGTGGGCAGGTGAGAAGTTGGGGGCGAGGGCGGGAGGGGGGGGGG
AGGTGTGCTTCAAGGTTTTTCCTTAAGGGAAAAAGCACATGTGCATGGAT
GTATGTACATCTGAGCCACCATCCACTGGTACCTTGACGGCTGTCAGGCT
TGAACAATTGGCCTCTTGTTCTTGAGACATTGTCTCGCATGTGTTTCACA
GGCGGCGTGCTCGCACTTGTTTTTAGTGGGTTACGCCCGCCGAGCCCCCG
CCGCAAGTGTAGGTCTCGTCAGTCGAATGTGGACTTTGATAGGCATGTTC
CTGGAAGAGGATGGGTTGGGTTGGTGTTTGGTCCAGCACTAGACTATGTG
TGATTGTCTCGTTCTTGGTTCTCGCACGCCGCCGGCCTCGGCCAGGCTTG
ACGCTGTCTTTCAGCGGGGGTGTCGGATGTTCACGGCCGAGGTGACGTTC
GGGATACAGCGGGCGCGTGCGATACTTCCTCCCTCGAAGAAGTCTCTCTG
TTTTCTCGTTCCCTCCACAACCCGGCGGAGTTGCAGATATCTTCACGACT
GGCTTTGATGACCTGGCCGGCCCTTGTAGCATCCCCAACCCATAATCCTG
CCGTTTGCTCTCTCCCGCCGCTCTCGCTGTCTCAACACTCCGCTGACTCT
CTGCACTAATTCAACCTACACCGGAAAACACCACGGCCAGGGCAGCGCCT
GATCGGGGCCGGCAGGGGCTCGGCGGCGCAGCCGCCGCCGGCGGCCTCGC
GGGGGGGGGGCGCGGGCACGGCCTAGGCGACGGCTTGCCCGGCTTCGACG
ACTCCAACCTCGTCGGCAGCAGCGACACCGGGGGAAACAACCACCGCTCG
CGCTCCCTGTCCCCTCGCTCCCGCCCGGCTCTCCGCGGCGCCGGCATTGC
CGGGAGCGCGCTGGAGGCGGGCACGCCGGAGGCGTCCGTGGCGGGCCGGG
ACAGGGGCCCCACGCTTGGGATTCACCGGGCGGGGCTGGGGGCGCACCTG
CTGCTGCCGGCGGTGTCGGTGGGCGCGGCCTGGCTGGTGGACCTGTTCAT
CCGCTTCCTGGAGAACCGCGTCGAGTACACGGCCAAGCACCACATTATTT
CGGGTGAGCGGGGTCGGTTTTTGTCGTTTGAGAGACGGGGTCGTTGTTGG
TGGTGGTGTTGGTGGTGGTGGTGATGGAATTGTTTGTGGTCGTTGTTGTT
GTTGTGTGCAAGGGATGGATGGCTGTGGCGAGGTGGAATCGAGCTGTTTT
GGGTCGTTTCGCAGTGTTGTACAGGTCCTTGTTGCGGTGCTCAACTTGGG
ACATGTGCTTTCCTCCTCGCTTCTTCCGCTTGGACTAGACTGATTTGGTC
ACTCTTGTGTCCTTGTATGCGTAGTGCCATCTATGCTGGACGTCGGTGCC
TACCCTTTAGTATCGGTGTGTGTGGACACATGATCTTTTGGCATTCGATA
TAGAACACCACCGTGGTTGGTCATGTCCTTGGGGTTTTTGGCGTGTTTTC
GTGTTTTCCTTTCCTTAGGCCCAACCTCTCGAATAAAATCCATCGATGCA
CGCTCTCCCCTCCCGCTGCTTCGCTTTGGTGCTTGTTTTGTCCAGGCTTC
CGCCTGTTTCAGCTGAGCATGTGCGCCGCTCTGCTGTTCATGTGCTTCAT
CCGCCGGACTAGCCCGTTCCGGTACCACAGCGAGTGGTTCTTCAGGCTCA
GCGGCCTGTGCCTCGACCTCATGACCACTGCCGCAATCAGCAGGTGTGGT
GTGCGTGTCTGACGACATGGACATGGTTAGGATCGTCTTGCTTGACGTAC
CGGTCCATGTGTTGAGGGGCCCAACACCAGTTGTTTTCCTAGAAATTGAT
TTGACAGCCATGCCACTCACCCACGTGTCTCTGTCTCAATGCCGTGTTGG
TGGAGGCCATCGGAATTGAATCTTGTGCGTCGACTGTTCGCCCCCGAATC
GATTGATTTTGATTGGCCTGCGTCGTCGTTGTTTTCTCGTGTGACTCACA
GCATCGGGTTTGCGAGCATCCCCGACAAGTTCAACGCCGCCTTCCTGCTG
GTGCTCTTCTCTTGCATCATGTGGAACGTGGGGGTCTTCATTGTGCTGGC
CCCTCGGATGTTCCCCAACTTCTGGTGAGCTATGAATATGAACTAACCCA
ATCAAAACCCCCTGAGTTGTTGTTTGTCTGGAACCCAAGCCTTTGCTATT
GCGAGACGTCTGTAGACTGTGCTGGGTCCTCGTTATCTGCACGTCTTGAG
AAAAAATTGGGAGTCATCGGAATCCCCATGCGCAGGCAGTTGCTCTTGTT
GTAGTTGTGGCCCTTTGTTTGTCGATGCGTGACTTGGAGAATCTCCACAA
GCCCCGCAACAACACCAGCGTGGTTGGAGGTTGTGGACACTTACTGTGTG
GGCATTGGCCGTTTGGTGCTGTTGCTAGCCACGACGCGGTCGCAATACCC
GGTGTTCTTTCGGCGCACCATGTATCGATCTCTCTCCGTTATTTTTCATC
CGGCGCGGCGTGTGCAGGCTGCTGAGGGCGACCGCGCTCATCGGCGACGC
GCTGGGCCACAGCTGGGTGGGCCTCCTGCTGCTGAGGGCCATGGACTTCC
GTCTGCAGACGCCCGTGCCCCTGGCTTACGCGTACAAGACCATGATGTTC
TTCGTGCCCGCTTCGGGGAGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12017:1..4121-

>mRNA_E-fasciculatus_F_contig12017.1574.1 ID=mRNA_E-fasciculatus_F_contig12017.1574.1|Name=mRNA_E-fasciculatus_F_contig12017.1574.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2472bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12017:1..4121- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATCAACTTCACCTTCTCCGCGCTAACCCTGGGCTTCGCAAGCGCGGG
GACCTACGTCCCCAGGACCCGGGCGGTGCTGGCCTCCATCTGGCACGAGG
CCCTGCCCATGCTGATCTACAGCCAGGTCCTCATCTGGGGACAGTCGTGC
GTGGCCCTGCTGACGGTCGGCCTCATCCGCCTGGGAAACCCGGACGTCTC
GGTCTTCCTCGGCGCTCTGATTACCATGGGCCTGGAGACGGGGCGCGACG
TGATGTCGTTCTCGACGAGAGAGATTGCGGGGGAATGGGCTGACGAGATG
ATCAACTTCACCTTCTCCGCGCTAACCCTGGGCTTCGCAAGCGCGGGGAC
CTACGTCCCCAGGACCCGGGCGGTGCTGGCCTCCATCTGGCACGAGGCCC
TGCCCATGCTGATCTACAGCCAGGTCCTCATCTGGGGACAGTCGTGCGTG
GCCCTGCTGACGGTCGGCCTCATCCGCCTGGGAAACCCGGACGTCTCGGT
CTTCCTCGGCGCTCTGATTACCATGGGCCTGGAGACGGGGCGCGACGTGA
TGTCGTTCTCGACGAGAGAGATTGCGGGGGAATGGGCTGACGAGGTGGTC
CGTCTTGCCGACTCTTTGGGCTTACTGCTATCCGTGTTTGGAGGCATTTG
CCTCATGACGATGCACATGGGAAGCTGGGGTCCGACCGGGGCCAGGTGGT
CCGTCTTGCCGACTCTTTGGGCTTACTGCTATCCGTGTTTGGAGGCATTT
GCCTCATGACGATGCACATGGGAAGCTGGGGTCCGACCGGGGCCAGGGCA
GCGCCTGATCGGGGCCGGCAGGGGCTCGGCGGCGCAGCCGCCGCCGGCGG
CCTCGCGGGGGGGGGGCGCGGGCACGGCCTAGGCGACGGCTTGCCCGGCT
TCGACGACTCCAACCTCGTCGGCAGCAGCGACACCGGGGGAAACAACCAC
CGCTCGCGCTCCCTGTCCCCTCGCTCCCGCCCGGCTCTCCGCGGCGCCGG
CATTGCCGGGAGCGCGCTGGAGGCGGGCACGCCGGAGGCGTCCGTGGCGG
GCCGGGACAGGGGCCCCACGCTTGGGATTCACCGGGCGGGGCTGGGGGCG
CACCTGCTGCTGCCGGCGGTGTCGGTGGGCGCGGCCTGGCTGGTGGACCT
GTTCATCCGCTTCCTGGAGAACCGCGTCGAGTACACGGCCAAGCACCACA
TTATTTCGGGGCAGCGCCTGATCGGGGCCGGCAGGGGCTCGGCGGCGCAG
CCGCCGCCGGCGGCCTCGCGGGGGGGGGGCGCGGGCACGGCCTAGGCGAC
GGCTTGCCCGGCTTCGACGACTCCAACCTCGTCGGCAGCAGCGACACCGG
GGGAAACAACCACCGCTCGCGCTCCCTGTCCCCTCGCTCCCGCCCGGCTC
TCCGCGGCGCCGGCATTGCCGGGAGCGCGCTGGAGGCGGGCACGCCGGAG
GCGTCCGTGGCGGGCCGGGACAGGGGCCCCACGCTTGGGATTCACCGGGC
GGGGCTGGGGGCGCACCTGCTGCTGCCGGCGGTGTCGGTGGGCGCGGCCT
GGCTGGTGGACCTGTTCATCCGCTTCCTGGAGAACCGCGTCGAGTACACG
GCCAAGCACCACATTATTTCGGGCTTCCGCCTGTTTCAGCTGAGCATGTG
CGCCGCTCTGCTGTTCATGTGCTTCATCCGCCGGACTAGCCCGTTCCGGT
ACCACAGCGAGTGGTTCTTCAGGCTCAGCGGCCTGTGCCTCGACCTCATG
ACCACTGCCGCAATCAGCAGGCTTCCGCCTGTTTCAGCTGAGCATGTGCG
CCGCTCTGCTGTTCATGTGCTTCATCCGCCGGACTAGCCCGTTCCGGTAC
CACAGCGAGTGGTTCTTCAGGCTCAGCGGCCTGTGCCTCGACCTCATGAC
CACTGCCGCAATCAGCAGCATCGGGTTTGCGAGCATCCCCGACAAGTTCA
ACGCCGCCTTCCTGCTGGTGCTCTTCTCTTGCATCATGTGGAACGTGGGG
GTCTTCATTGTGCTGGCCCCTCGGATGTTCCCCAACTTCTGCATCGGGTT
TGCGAGCATCCCCGACAAGTTCAACGCCGCCTTCCTGCTGGTGCTCTTCT
CTTGCATCATGTGGAACGTGGGGGTCTTCATTGTGCTGGCCCCTCGGATG
TTCCCCAACTTCTGGCTGCTGAGGGCGACCGCGCTCATCGGCGACGCGCT
GGGCCACAGCTGGGTGGGCCTCCTGCTGCTGAGGGCCATGGACTTCCGTC
TGCAGACGCCCGTGCCCCTGGCTTACGCGTACAAGACCATGATGTTCTTC
GTGCCCGCTTCGGGGAGCGCTGCTGAGGGCGACCGCGCTCATCGGCGACG
CGCTGGGCCACAGCTGGGTGGGCCTCCTGCTGCTGAGGGCCATGGACTTC
CGTCTGCAGACGCCCGTGCCCCTGGCTTACGCGTACAAGACCATGATGTT
CTTCGTGCCCGCTTCGGGGAGC
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